Ecosyste.ms: Issues

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GitHub / linkml/linkml-runtime issues and pull requests

#235 - Add methods to replace functionality in biolink model toolkit with schemaview

Pull Request - State: closed - Opened by sierra-moxon almost 2 years ago - 1 comment

#234 - Fix for https://github.com/linkml/linkml/issues/626.

Pull Request - State: closed - Opened by hsolbrig almost 2 years ago

#233 - bake mergeimports functionality into SchemaView

Pull Request - State: closed - Opened by sujaypatil96 almost 2 years ago - 1 comment

#232 - Update to latest metamodel

Pull Request - State: closed - Opened by cmungall almost 2 years ago - 2 comments

#230 - include subsets in merge_schemas method.

Pull Request - State: closed - Opened by cmungall almost 2 years ago - 1 comment

#229 - Fix for undeclared xsd when emitting literals

Pull Request - State: closed - Opened by cmungall almost 2 years ago - 1 comment

#228 - Issue 1040

Pull Request - State: closed - Opened by hsolbrig almost 2 years ago - 1 comment

#227 - Support Pydantic BaseModel in loaders and dumpers

Pull Request - State: closed - Opened by kevinschaper almost 2 years ago - 8 comments
Labels: enhancement

#226 - Issue 65

Pull Request - State: closed - Opened by hsolbrig almost 2 years ago

#225 - Simplifying schemaview implementation of induced attributes.

Pull Request - State: closed - Opened by cmungall almost 2 years ago - 1 comment

#224 - Allow percent_encoded annotations on slot

Pull Request - State: closed - Opened by cmungall almost 2 years ago

#223 - Allow for non-CURIE identifiers to be encoded.

Pull Request - State: closed - Opened by cmungall almost 2 years ago - 2 comments

#222 - Add enum slot link for slots defined in slot_usage.

Pull Request - State: closed - Opened by amc-corey-cox almost 2 years ago - 3 comments

#221 - Add function to get all slots using named enum as range

Pull Request - State: closed - Opened by amc-corey-cox almost 2 years ago - 1 comment

#218 - Please create issues in main linkml/linkml repo, not here

Issue - State: open - Opened by nlharris almost 2 years ago
Labels: help wanted

#217 - changed instruction about where to file issues

Pull Request - State: closed - Opened by nlharris almost 2 years ago

#216 - Handle any_of of ranges in rdflib_loader

Pull Request - State: closed - Opened by cmungall almost 2 years ago

#215 - Refactoring ObjectIndex.

Pull Request - State: closed - Opened by cmungall almost 2 years ago

#214 - Change poetry installation method in CI to pipx

Pull Request - State: closed - Opened by dalito almost 2 years ago - 4 comments

#213 - enum permissible value ancestors and parents methods

Pull Request - State: closed - Opened by sierra-moxon almost 2 years ago - 1 comment

#212 - windows tests are failing

Issue - State: closed - Opened by cmungall almost 2 years ago - 3 comments

#211 - Creating an ObjectIndex, fixes https://github.com/linkml/linkml/issues/1009

Pull Request - State: closed - Opened by cmungall almost 2 years ago - 1 comment

#207 - Adding test for ambiguous attributes

Pull Request - State: closed - Opened by cmungall almost 2 years ago - 1 comment

#206 - relax prefixcommons pinning

Pull Request - State: closed - Opened by cmungall almost 2 years ago

#205 - csv testing and bug fixes

Pull Request - State: open - Opened by joshmoore almost 2 years ago - 4 comments

#204 - Materialize structured patterns on class slot usages and attributes

Pull Request - State: closed - Opened by pkalita-lbl almost 2 years ago - 2 comments

#203 - `SchemaView.materialize_patterns()` does not account for `slot_usage`

Issue - State: closed - Opened by pkalita-lbl almost 2 years ago - 1 comment

#201 - bug: add missing logging import to csvutils.py

Pull Request - State: closed - Opened by joshmoore about 2 years ago

#200 - dd linkml to introspection path

Pull Request - State: closed - Opened by cmungall about 2 years ago - 1 comment

#199 - add schemaview method to compute class siblings

Pull Request - State: closed - Opened by sujaypatil96 about 2 years ago - 2 comments

#197 - implement method to get classes associated with slot

Pull Request - State: closed - Opened by sujaypatil96 about 2 years ago - 4 comments

#196 - Remove note on requirements.txt

Pull Request - State: closed - Opened by dalito about 2 years ago

#195 - uncamelcase method

Pull Request - State: closed - Opened by sierra-moxon about 2 years ago - 1 comment

#194 - Adding domain_of to induced slot.

Pull Request - State: closed - Opened by cmungall about 2 years ago - 1 comment

#193 - Adding units

Pull Request - State: closed - Opened by cmungall about 2 years ago - 1 comment

#192 - Prepare model files for release 1.3

Pull Request - State: closed - Opened by cmungall about 2 years ago - 1 comment

#191 - bump prefixcommons. Fixes https://github.com/linkml/linkml/issues/502

Pull Request - State: closed - Opened by cmungall about 2 years ago

#190 - Ensure inference_utils works for slots with spaces

Pull Request - State: closed - Opened by cmungall about 2 years ago - 1 comment

#187 - unit test for linkml issue 840

Pull Request - State: closed - Opened by sujaypatil96 over 2 years ago - 1 comment

#186 - Add `generate_patterns()` and `materialize_patterns()`

Pull Request - State: closed - Opened by sujaypatil96 over 2 years ago

#185 - add a simple method to return multivalued slots

Pull Request - State: closed - Opened by sierra-moxon over 2 years ago - 1 comment

#184 - WIP: RDF prefix issue fix in rdflib dumper

Pull Request - State: closed - Opened by victoriasoesanto over 2 years ago - 1 comment

#183 - Do not eliminate name slot in schema_as_dict. Fixes #182

Pull Request - State: closed - Opened by cmungall over 2 years ago

#182 - schema_as_dict is over eager and eliminates "name" slots

Issue - State: closed - Opened by cmungall over 2 years ago

#181 - WIP: Fixed RDF prefix issue in rdflib dumper

Pull Request - State: closed - Opened by victoriasoesanto over 2 years ago - 1 comment

#177 - try catch needed

Pull Request - State: closed - Opened by hrshdhgd over 2 years ago - 1 comment

#176 - Fixes An `if` statement missing #175

Pull Request - State: closed - Opened by hrshdhgd over 2 years ago

#175 - An `if` statement missing

Issue - State: closed - Opened by hrshdhgd over 2 years ago
Labels: bug

#173 - Adding from_schema to types. Fixes https://github.com/linkml/linkml/issues/784

Pull Request - State: closed - Opened by cmungall over 2 years ago - 1 comment

#172 - Move tests/test_utils/test_context_utils.py from linkml to linkml-runtime

Issue - State: closed - Opened by dalito over 2 years ago - 1 comment

#171 - turn off info logging for illegal prefix while we clean up these

Pull Request - State: closed - Opened by sierra-moxon over 2 years ago - 1 comment

#170 - Updated linkml-model to 1.2.2

Pull Request - State: closed - Opened by cmungall over 2 years ago - 2 comments

#169 - Include a version of the python 3.10 dataclass patch

Pull Request - State: closed - Opened by hsolbrig over 2 years ago - 2 comments

#163 - ImportMap strips trailing separators on local files

Issue - State: closed - Opened by hsolbrig over 2 years ago - 1 comment

#155 - Modify codebase so it's compatible with pyyaml>5.4

Pull Request - State: closed - Opened by sujaypatil96 over 2 years ago
Labels: bug

#153 - pinning `pyyaml<5.4`

Pull Request - State: closed - Opened by sujaypatil96 over 2 years ago

#150 - Unpinning pyyaml

Pull Request - State: closed - Opened by cmungall over 2 years ago

#132 - removing shexjsg

Pull Request - State: closed - Opened by cmungall over 2 years ago

#116 - EXPERIMENT DNM: linkml issue 576

Pull Request - State: closed - Opened by cmungall over 2 years ago - 1 comment

#114 - experimental dynamic metamodel extension

Pull Request - State: closed - Opened by cmungall over 2 years ago - 1 comment

#92 - Added rdflib-shim.

Pull Request - State: closed - Opened by hsolbrig almost 3 years ago - 1 comment

#89 - Fix signature issue in previous issue_76 fix.

Pull Request - State: closed - Opened by hsolbrig almost 3 years ago - 5 comments

#29 - The publish workflow fails with a "Detached HEAD" message

Issue - State: closed - Opened by hsolbrig about 3 years ago - 1 comment
Labels: bug

#2 - compile_python uses the wrong root directory

Issue - State: closed - Opened by hsolbrig over 3 years ago - 1 comment