Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / lieberinstitute/spatial_hpc issues and pull requests

#35 - Tissue Spot Counts

Issue - State: closed - Opened by bashalo about 1 month ago - 2 comments

#34 - Fix raw-data/FASTQ README.md formatting

Issue - State: open - Opened by lcolladotor 11 months ago

#34 - Fix raw-data/FASTQ README.md formatting

Issue - State: open - Opened by lcolladotor 11 months ago

#33 - Fixing the deployment of your iSEE apps

Issue - State: closed - Opened by lcolladotor 11 months ago - 3 comments

#33 - Fixing the deployment of your iSEE apps

Issue - State: closed - Opened by lcolladotor 11 months ago - 3 comments

#32 - Loupe alignments

Issue - State: closed - Opened by madhavitippani almost 3 years ago - 1 comment

#32 - Loupe alignments

Issue - State: closed - Opened by madhavitippani almost 3 years ago - 1 comment

#31 - Exploratory data analysis

Issue - State: closed - Opened by madhavitippani almost 3 years ago

#31 - Exploratory data analysis

Issue - State: closed - Opened by madhavitippani almost 3 years ago

#30 - QC checks

Issue - State: closed - Opened by madhavitippani almost 3 years ago - 1 comment

#30 - QC checks

Issue - State: closed - Opened by madhavitippani almost 3 years ago - 1 comment

#29 - Build shiny app on combined spe

Issue - State: closed - Opened by madhavitippani almost 3 years ago - 1 comment

#29 - Build shiny app on combined spe

Issue - State: closed - Opened by madhavitippani almost 3 years ago - 1 comment

#28 - Combine spe for new data and pilot data

Issue - State: closed - Opened by madhavitippani almost 3 years ago

#28 - Combine spe for new data and pilot data

Issue - State: closed - Opened by madhavitippani almost 3 years ago

#27 - Build basic spe

Issue - State: closed - Opened by madhavitippani almost 3 years ago - 1 comment

#27 - Build basic spe

Issue - State: closed - Opened by madhavitippani almost 3 years ago - 1 comment

#26 - Run spaceranger for new data

Issue - State: closed - Opened by madhavitippani almost 3 years ago - 2 comments

#26 - Run spaceranger for new data

Issue - State: closed - Opened by madhavitippani almost 3 years ago - 2 comments

#25 - Try running BayesSpace with many different k's

Issue - State: closed - Opened by lcolladotor about 3 years ago - 2 comments

#25 - Try running BayesSpace with many different k's

Issue - State: closed - Opened by lcolladotor about 3 years ago - 2 comments

#24 - Reduce colors in cluster plots

Issue - State: closed - Opened by lcolladotor about 3 years ago

#24 - Reduce colors in cluster plots

Issue - State: closed - Opened by lcolladotor about 3 years ago

#23 - Checking BayesSpace code

Issue - State: closed - Opened by lcolladotor about 3 years ago

#23 - Checking BayesSpace code

Issue - State: closed - Opened by lcolladotor about 3 years ago

#22 - Flipping images

Issue - State: closed - Opened by lcolladotor about 3 years ago - 3 comments

#22 - Flipping images

Issue - State: closed - Opened by lcolladotor about 3 years ago - 3 comments

#21 - cells counts from spotspotcheck donot match the segmentation

Issue - State: closed - Opened by madhavitippani about 3 years ago - 1 comment

#21 - cells counts from spotspotcheck donot match the segmentation

Issue - State: closed - Opened by madhavitippani about 3 years ago - 1 comment

#20 - Evaluate the pilot data

Issue - State: closed - Opened by lcolladotor about 3 years ago

#20 - Evaluate the pilot data

Issue - State: closed - Opened by lcolladotor about 3 years ago

#18 - Out of tissue and scran QC checks on the pilot data

Issue - State: closed - Opened by lcolladotor about 3 years ago - 1 comment
Labels: optional

#18 - Out of tissue and scran QC checks on the pilot data

Issue - State: closed - Opened by lcolladotor about 3 years ago - 1 comment
Labels: optional

#17 - Run BayesSpace on the pilot samples

Issue - State: closed - Opened by lcolladotor about 3 years ago - 2 comments

#17 - Run BayesSpace on the pilot samples

Issue - State: closed - Opened by lcolladotor about 3 years ago - 2 comments

#16 - Build SPE for the pilot data

Issue - State: closed - Opened by lcolladotor about 3 years ago - 4 comments

#16 - Build SPE for the pilot data

Issue - State: closed - Opened by lcolladotor about 3 years ago - 4 comments

#15 - Re-run spaceranger with all FASTQ data

Issue - State: closed - Opened by lcolladotor about 3 years ago - 1 comment

#15 - Re-run spaceranger with all FASTQ data

Issue - State: closed - Opened by lcolladotor about 3 years ago - 1 comment

#14 - Test feasibility of SpaGCN for multiple capture areas

Issue - State: closed - Opened by stephaniecpage about 3 years ago

#14 - Test feasibility of SpaGCN for multiple capture areas

Issue - State: closed - Opened by stephaniecpage about 3 years ago

#13 - Make spot-level QC plots

Issue - State: closed - Opened by lcolladotor about 3 years ago

#13 - Make spot-level QC plots

Issue - State: closed - Opened by lcolladotor about 3 years ago

#12 - Run BayesSpace on HARMONY dimensions

Issue - State: closed - Opened by lcolladotor about 3 years ago

#12 - Run BayesSpace on HARMONY dimensions

Issue - State: closed - Opened by lcolladotor about 3 years ago

#11 - Segment number of cells per spot

Issue - State: closed - Opened by lcolladotor about 3 years ago - 2 comments

#11 - Segment number of cells per spot

Issue - State: closed - Opened by lcolladotor about 3 years ago - 2 comments

#10 - Build initial shiny app

Issue - State: closed - Opened by lcolladotor about 3 years ago - 1 comment

#10 - Build initial shiny app

Issue - State: closed - Opened by lcolladotor about 3 years ago - 1 comment

#9 - Build initial SPE object

Issue - State: closed - Opened by lcolladotor about 3 years ago

#9 - Build initial SPE object

Issue - State: closed - Opened by lcolladotor about 3 years ago

#8 - Compare SpaceRanger metrics against other samples

Issue - State: closed - Opened by lcolladotor about 3 years ago

#8 - Compare SpaceRanger metrics against other samples

Issue - State: closed - Opened by lcolladotor about 3 years ago

#7 - Obtain sample information sheet

Issue - State: closed - Opened by lcolladotor about 3 years ago - 3 comments

#7 - Obtain sample information sheet

Issue - State: closed - Opened by lcolladotor about 3 years ago - 3 comments

#6 - Run spaceranger

Issue - State: closed - Opened by lcolladotor about 3 years ago - 6 comments

#6 - Run spaceranger

Issue - State: closed - Opened by lcolladotor about 3 years ago - 6 comments

#5 - Arrange FASTQ file transfer to JHPCE

Issue - State: closed - Opened by lcolladotor about 3 years ago - 1 comment

#5 - Arrange FASTQ file transfer to JHPCE

Issue - State: closed - Opened by lcolladotor about 3 years ago - 1 comment

#4 - Add loupe alignment files

Issue - State: closed - Opened by lcolladotor about 3 years ago - 2 comments

#4 - Add loupe alignment files

Issue - State: closed - Opened by lcolladotor about 3 years ago - 2 comments

#3 - Transfer raw images

Issue - State: closed - Opened by lcolladotor about 3 years ago - 1 comment

#2 - Timeline updates for dissections

Issue - State: closed - Opened by stephaniecpage over 3 years ago - 2 comments

#1 - settle on a name

Issue - State: closed - Opened by stephaniehicks over 3 years ago - 2 comments