labsyspharm/cylinter issues and pull requests

#193 - Update installation docs with 64-bit chip details

Pull Request - State: closed - Opened by gjbaker 2 months ago

#192 - Add meta.yaml file

Pull Request - State: closed - Opened by gjbaker 3 months ago

#191 - Remove meta.yaml file

Pull Request - State: closed - Opened by gjbaker 3 months ago

#190 - Move meta.yml file

Pull Request - State: closed - Opened by gjbaker 3 months ago

#189 - Remove pyproject.toml file

Pull Request - State: closed - Opened by gjbaker 3 months ago

#188 - Update installation docs

Pull Request - State: closed - Opened by gjbaker 3 months ago

#187 - Update cylinter_report handling in ROI module

Pull Request - State: closed - Opened by gjbaker 3 months ago

#186 - ImportError: Qt binding modules

Issue - State: closed - Opened by josenimo 3 months ago - 5 comments

#185 - Update docs for compatibility with v0.0.48

Pull Request - State: closed - Opened by gjbaker 3 months ago

#184 - Update docs with GMM and QC report info.

Pull Request - State: closed - Opened by gjbaker 4 months ago

#183 - Improve installation documentation

Pull Request - State: closed - Opened by jmuhlich 4 months ago

#182 - Remove old config file.

Pull Request - State: closed - Opened by gjbaker 4 months ago

#181 - Add chuck-size parameter to cylinter config.

Pull Request - State: closed - Opened by gjbaker 4 months ago

#180 - Fix gating module print statement spacing.

Pull Request - State: closed - Opened by gjbaker 4 months ago

#179 - Generate cylinter_report.yml file.

Pull Request - State: closed - Opened by gjbaker 4 months ago

#178 - Running an "IndexError: list index out of range" error

Issue - State: closed - Opened by XNN19 5 months ago - 5 comments

#177 - Running a single sample

Issue - State: closed - Opened by josenimo 5 months ago - 5 comments

#176 - IndexError, trying MCMICRO TMA Cylinter run

Issue - State: closed - Opened by josenimo 7 months ago - 4 comments

#175 - Update installation code to include current version number

Pull Request - State: closed - Opened by gjbaker 7 months ago

#174 - Deprecation? KeyError 'viewSample'

Issue - State: closed - Opened by josenimo 7 months ago - 3 comments

#173 - Update installation docs with Miniconda details.

Pull Request - State: closed - Opened by gjbaker 7 months ago

#172 - Update docs for demo dataset download.

Pull Request - State: closed - Opened by gjbaker 8 months ago

#171 - Deprecated version 0.0.44 installed

Issue - State: closed - Opened by MDHowe4 8 months ago - 2 comments

#170 - Remove add module text from docs.

Pull Request - State: closed - Opened by gjbaker 8 months ago

#169 - Update doc links.

Pull Request - State: closed - Opened by gjbaker 8 months ago

#168 - Update docs file name.

Pull Request - State: closed - Opened by gjbaker 8 months ago

#167 - Update input file structure docs.

Pull Request - State: closed - Opened by gjbaker 8 months ago

#166 - Update module descriptions in docs.

Pull Request - State: closed - Opened by gjbaker 8 months ago

#165 - Update installation instructions.

Pull Request - State: closed - Opened by gjbaker 8 months ago

#164 - Update image of example cores.

Pull Request - State: closed - Opened by gjbaker 8 months ago

#163 - Update docs with gating.

Pull Request - State: closed - Opened by gjbaker 8 months ago

#162 - Update funding in README.

Pull Request - State: closed - Opened by gjbaker 8 months ago

#161 - Update docs.

Pull Request - State: closed - Opened by gjbaker 8 months ago

#160 - Update docs with automated artifact detection.

Pull Request - State: closed - Opened by gjbaker 8 months ago

#159 - Update docs with v0.0.47 anaconda install command.

Pull Request - State: closed - Opened by gjbaker 8 months ago

#158 - Include automated artifact detection.

Pull Request - State: closed - Opened by gjbaker 8 months ago

#157 - Classical artifact detection

Pull Request - State: closed - Opened by ziyuanzhao2000 8 months ago

#156 - Fix line break issues

Pull Request - State: closed - Opened by ziyuanzhao2000 9 months ago

#155 - Fix minor bugs in selectROIs.

Pull Request - State: closed - Opened by gjbaker 9 months ago

#154 - Remove call to glob in selectROIs and lint.

Pull Request - State: closed - Opened by gjbaker 9 months ago

#153 - Roi_dev3

Pull Request - State: closed - Opened by ziyuanzhao2000 9 months ago

#152 - Roi dev2

Pull Request - State: closed - Opened by ziyuanzhao2000 9 months ago

#151 - Cleanup a few config files and log messages

Pull Request - State: closed - Opened by gjbaker 9 months ago

#150 - Roi dev

Pull Request - State: closed - Opened by gjbaker 9 months ago

#149 - Roi dev

Pull Request - State: closed - Opened by ziyuanzhao2000 9 months ago - 1 comment

#148 - Avoid errors caused by empty dataframes.

Pull Request - State: closed - Opened by gjbaker 9 months ago

#147 - Allow for arbitrary sample selection in data filtration modules.

Pull Request - State: closed - Opened by gjbaker 10 months ago

#146 - Add explicit pyqt dependency

Pull Request - State: closed - Opened by jmuhlich 10 months ago - 1 comment

#145 - getting a numpy bool deprecation exception

Issue - State: closed - Opened by psenin-sanofi 12 months ago - 3 comments

#144 - TypeError: unsupported operand type(s) for +

Issue - State: closed - Opened by FloWuenne 12 months ago - 2 comments

#143 - Bring back docs folder.

Pull Request - State: closed - Opened by gjbaker 12 months ago

#142 - Temporarily remove docs folder for conda release.

Pull Request - State: closed - Opened by gjbaker 12 months ago

#141 - Gitignore docs folder before creating conda release.

Pull Request - State: closed - Opened by gjbaker 12 months ago

#140 - Adjust embedding and ridge plot layouts.

Pull Request - State: closed - Opened by gjbaker 12 months ago

#139 - Ensure correct number of iterations when looping over channels to col…

Pull Request - State: closed - Opened by gjbaker 12 months ago

#138 - Add ridgeplot code to PCA/clustermap modules and embedding facetgrid …

Pull Request - State: closed - Opened by gjbaker 12 months ago

#137 - Make conda recipe compatible with v0.0.46

Pull Request - State: closed - Opened by gjbaker 12 months ago

#136 - Fix outliers plot widget window formatting.

Pull Request - State: closed - Opened by gjbaker 12 months ago

#135 - Add synapseclient installation to docs.

Pull Request - State: closed - Opened by gjbaker about 1 year ago

#134 - Update docs for Mamba install.

Pull Request - State: closed - Opened by gjbaker about 1 year ago

#133 - Update docs with mamba installation instructions.

Pull Request - State: closed - Opened by gjbaker about 1 year ago

#132 - Segfault

Pull Request - State: closed - Opened by gjbaker about 1 year ago

#131 - conda dependency resolution is slow

Issue - State: closed - Opened by jmuhlich over 1 year ago - 3 comments

#130 - View DNA/area hists in log scale.

Pull Request - State: closed - Opened by gjbaker over 1 year ago

#129 - Compatibility with ubuntu?

Issue - State: closed - Opened by aandytu over 1 year ago - 4 comments

#128 - Bump joblib from 0.17.0 to 1.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#127 - Add silhouette analysis, elliptical ROI selection, thumbnail performa…

Pull Request - State: closed - Opened by gjbaker almost 2 years ago

#126 - Increment setup.py version.

Pull Request - State: closed - Opened by gjbaker about 2 years ago

#125 - Create option to use standard tif image format.

Pull Request - State: closed - Opened by gjbaker about 2 years ago

#124 - running into ValueError

Issue - State: closed - Opened by josenimo about 2 years ago - 10 comments

#123 - Indent df column reorganization function.

Pull Request - State: closed - Opened by gjbaker about 2 years ago

#122 - Tool dockerization

Pull Request - State: open - Opened by ArtemSokolov about 2 years ago

#121 - Installation error (cellcutter version)

Issue - State: closed - Opened by adajnq about 2 years ago - 3 comments

#120 - Not getting .yml file upon downloading Example files

Issue - State: closed - Opened by josenimo about 2 years ago - 6 comments

#119 - Add cellcutter package to setup.py

Pull Request - State: closed - Opened by gjbaker about 2 years ago

#118 - Specify cellcutter version in setup.py.

Pull Request - State: closed - Opened by gjbaker about 2 years ago