Ecosyste.ms: Issues

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GitHub / kblin/ncbi-genome-download issues and pull requests

#86 - ncbi-genome-download as a python method

Issue - State: open - Opened by JFsanchezherrero over 5 years ago - 1 comment
Labels: documentation

#85 - The script is not at all a necessary tool

Issue - State: closed - Opened by STRHunter over 5 years ago - 2 comments
Labels: not a bug, wontfix

#79 - 'Too few arguments' Error while trying to download genomes with specific taxIDs

Issue - State: closed - Opened by jananiravi almost 6 years ago - 7 comments
Labels: question, documentation

#77 - Download LKAM01

Issue - State: closed - Opened by sjackman about 6 years ago - 7 comments
Labels: question

#75 - Download one assembly per species:

Issue - State: closed - Opened by EisenRa about 6 years ago - 4 comments
Labels: question

#72 - How to combine multiple folder fasta output into one folder

Issue - State: closed - Opened by mirzaabidpp over 6 years ago - 2 comments
Labels: question

#71 - Problem with downloading using an accession list

Issue - State: closed - Opened by Anto007 over 6 years ago - 14 comments
Labels: documentation

#70 - Is there a way to download MAG/UBA sequences from the Genbank?

Issue - State: closed - Opened by songb1230 over 6 years ago - 4 comments
Labels: question

#69 - Is it possible to download NCBI protein database instead of genome?

Issue - State: closed - Opened by enriiquee over 6 years ago - 2 comments
Labels: question

#68 - Should we install `gimme_taxa.py` via setup.py?

Issue - State: closed - Opened by kblin over 6 years ago - 1 comment
Labels: help wanted, proposal

#65 - taxid usage

Issue - State: closed - Opened by phiweger over 6 years ago - 1 comment
Labels: not a bug, question

#63 - Human readable producing non-unique folders

Issue - State: open - Opened by tseemann over 6 years ago - 3 comments
Labels: bug

#62 - Make symlinks relative rather than absolute

Issue - State: closed - Opened by tseemann over 6 years ago
Labels: enhancement, help wanted

#58 - Small optimization: download all assemblies in the same step.

Pull Request - State: closed - Opened by rhpvorderman almost 7 years ago - 3 comments
Labels: proposal

#50 - Downloads stall in mid-process

Issue - State: closed - Opened by kblin about 7 years ago - 6 comments

#47 - Parallel downloads of MD5SUM files?

Issue - State: closed - Opened by kblin about 7 years ago - 2 comments
Labels: enhancement, help wanted

#38 - Create output of descriptors of downloaded genomes

Issue - State: open - Opened by dutchscientist over 7 years ago - 5 comments
Labels: enhancement, help wanted

#37 - Problem installing version 0.2.3 on Biolinux8 (Virtualbox) [solved]

Issue - State: closed - Opened by dutchscientist over 7 years ago - 1 comment
Labels: question

#29 - starts, then fail

Issue - State: closed - Opened by phiweger almost 8 years ago - 26 comments
Labels: bug

#25 - core: Check symlink existence, fix #20

Pull Request - State: closed - Opened by anphung almost 8 years ago

#15 - Enhancement to --human-readable output

Issue - State: open - Opened by tseemann about 8 years ago - 17 comments
Labels: enhancement