jeffdaily/parasail issues and pull requests

#49 - EMBOSS and SSW style tracebacks can put sequence and match lines out-of-register

Issue - State: closed - Opened by Elmohound almost 7 years ago - 14 comments

#48 - Read results in non-parseable SAM alignment

Issue - State: closed - Opened by dburkhardt almost 7 years ago - 11 comments

#48 - Read results in non-parseable SAM alignment

Issue - State: closed - Opened by dburkhardt almost 7 years ago - 11 comments

#47 - Reliable segmentation fault with all traceback alignments

Issue - State: closed - Opened by dburkhardt almost 7 years ago - 9 comments

#47 - Reliable segmentation fault with all traceback alignments

Issue - State: closed - Opened by dburkhardt almost 7 years ago - 9 comments

#46 - Segfault in sw_trace_striped_avx2_256_8

Issue - State: closed - Opened by jvkersch almost 7 years ago - 2 comments

#46 - Segfault in sw_trace_striped_avx2_256_8

Issue - State: closed - Opened by jvkersch almost 7 years ago - 2 comments

#45 - Add meson

Pull Request - State: closed - Opened by SoapZA almost 7 years ago - 10 comments

#45 - Add meson

Pull Request - State: closed - Opened by SoapZA almost 7 years ago - 10 comments

#44 - Large Memory Consumption with Traceback

Issue - State: closed - Opened by nlubock almost 7 years ago - 11 comments

#44 - Large Memory Consumption with Traceback

Issue - State: closed - Opened by nlubock almost 7 years ago - 11 comments

#43 - Speedup and memory reduction of backtracing alignment

Issue - State: closed - Opened by martin-steinegger almost 7 years ago - 2 comments

#43 - Speedup and memory reduction of backtracing alignment

Issue - State: closed - Opened by martin-steinegger almost 7 years ago - 2 comments

#42 - semi-global question

Issue - State: closed - Opened by armintoepfer almost 7 years ago - 4 comments

#42 - semi-global question

Issue - State: closed - Opened by armintoepfer almost 7 years ago - 4 comments

#41 - HAVE_KNC 0 for a Intel(R) Xeon Phi(TM) CPU 7250

Issue - State: closed - Opened by ftegenfe almost 7 years ago - 2 comments
Labels: wontfix

#41 - HAVE_KNC 0 for a Intel(R) Xeon Phi(TM) CPU 7250

Issue - State: closed - Opened by ftegenfe almost 7 years ago - 2 comments
Labels: wontfix

#40 - Ambiguous define with htslib

Issue - State: closed - Opened by armintoepfer about 7 years ago - 4 comments

#40 - Ambiguous define with htslib

Issue - State: closed - Opened by armintoepfer about 7 years ago - 4 comments

#39 - Add meson build system

Issue - State: closed - Opened by armintoepfer about 7 years ago - 4 comments
Labels: enhancement, help wanted

#39 - Add meson build system

Issue - State: closed - Opened by armintoepfer about 7 years ago - 4 comments
Labels: enhancement, help wanted

#38 - Fix installed includes

Pull Request - State: closed - Opened by rkern about 7 years ago - 1 comment

#38 - Fix installed includes

Pull Request - State: closed - Opened by rkern about 7 years ago - 1 comment

#37 - strdup implicitly declared in parser.c

Issue - State: closed - Opened by jeffdaily about 7 years ago

#37 - strdup implicitly declared in parser.c

Issue - State: closed - Opened by jeffdaily about 7 years ago

#36 - make check fails without zlib

Issue - State: closed - Opened by jeffdaily about 7 years ago

#36 - make check fails without zlib

Issue - State: closed - Opened by jeffdaily about 7 years ago

#35 - It appears that the `-s` option to specify SAM is not handled by parasail_aligner

Issue - State: closed - Opened by laserson about 7 years ago - 4 comments

#35 - It appears that the `-s` option to specify SAM is not handled by parasail_aligner

Issue - State: closed - Opened by laserson about 7 years ago - 4 comments

#34 - Stop Codon Error

Issue - State: closed - Opened by nlubock over 7 years ago - 3 comments

#34 - Stop Codon Error

Issue - State: closed - Opened by nlubock over 7 years ago - 3 comments

#33 - Building Shared Library

Issue - State: closed - Opened by altaetran over 7 years ago - 2 comments

#33 - Building Shared Library

Issue - State: closed - Opened by altaetran over 7 years ago - 2 comments

#32 - Understanding Result

Issue - State: closed - Opened by saseptim over 7 years ago - 1 comment

#32 - Understanding Result

Issue - State: closed - Opened by saseptim over 7 years ago - 1 comment

#31 - About gap extent penalty

Issue - State: open - Opened by angeload almost 8 years ago - 13 comments

#30 - Question only - pairwise local alignment without gaps

Issue - State: open - Opened by ndaniel almost 8 years ago - 1 comment

#30 - Question only - pairwise local alignment without gaps

Issue - State: open - Opened by ndaniel almost 8 years ago - 1 comment

#29 - fix

Pull Request - State: closed - Opened by xubo245 almost 8 years ago - 2 comments
Labels: wontfix

#29 - fix

Pull Request - State: closed - Opened by xubo245 almost 8 years ago - 2 comments
Labels: wontfix

#28 - Skylake support

Issue - State: closed - Opened by armintoepfer almost 8 years ago - 3 comments

#28 - Skylake support

Issue - State: closed - Opened by armintoepfer almost 8 years ago - 3 comments

#27 - Hotfix/1.1.1 submodule

Pull Request - State: closed - Opened by armintoepfer almost 8 years ago - 1 comment

#27 - Hotfix/1.1.1 submodule

Pull Request - State: closed - Opened by armintoepfer almost 8 years ago - 1 comment

#26 - Needleman-Wunsch with affine gap penalties

Issue - State: closed - Opened by iagorios about 8 years ago - 4 comments

#25 - Enable add_subdirectory()

Pull Request - State: closed - Opened by armintoepfer about 8 years ago - 6 comments

#24 - DNA Substitution Matrices

Issue - State: closed - Opened by rmhubley over 8 years ago - 6 comments

#24 - DNA Substitution Matrices

Issue - State: closed - Opened by rmhubley over 8 years ago - 6 comments

#23 - SImple DNA search

Issue - State: open - Opened by rmhubley over 8 years ago - 2 comments

#23 - SImple DNA search

Issue - State: open - Opened by rmhubley over 8 years ago - 2 comments

#22 - provide Java bindings

Issue - State: closed - Opened by iagorios over 8 years ago - 6 comments

#21 - -O3 optimization causes incorrect results on OSX clang for _mm256_blendv_epi8

Issue - State: closed - Opened by jeffdaily over 8 years ago - 1 comment
Labels: bug