Ecosyste.ms: Issues

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GitHub / incatools/ontology-development-kit issues and pull requests

#1068 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 5 months ago

#1067 - Ugrade base system to Ubuntu 24.04

Pull Request - State: closed - Opened by gouttegd 5 months ago

#1066 - Update ROBOT to version 1.9.6

Pull Request - State: closed - Opened by matentzn 5 months ago

#1065 - NEVER merge: Branch 1.5 maintenance (change tracking)

Pull Request - State: open - Opened by matentzn 5 months ago

#1064 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 5 months ago

#1063 - robot needs java http proxy settings when behind a proxy

Issue - State: open - Opened by schristley 5 months ago - 1 comment
Labels: enhancement

#1062 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 6 months ago

#1061 - Issue updating ODK - cdno-odk.yaml doesn't exist

Issue - State: closed - Opened by LilyAndres 6 months ago - 10 comments

#1060 - Download component from source url workflow can't find file to copy

Issue - State: open - Opened by anitacaron 6 months ago - 7 comments
Labels: bug

#1058 - Could you please add me on Slack?

Issue - State: closed - Opened by LilyAndres 6 months ago - 1 comment

#1057 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 6 months ago

#1056 - Should `$(IMPORTDIR)/%_terms_combined.txt` be `.PRECIOUS`?

Issue - State: open - Opened by joeflack4 6 months ago - 2 comments

#1055 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 6 months ago

#1054 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 6 months ago

#1053 - Update ROBOT plugins and SSSOM-CLI.

Pull Request - State: closed - Opened by gouttegd 6 months ago

#1052 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 6 months ago

#1051 - Facilitate or at least document how to share the OAK cache

Issue - State: open - Opened by gouttegd 6 months ago
Labels: enhancement, documentation

#1050 - Fix use of ODK_BINDS option.

Pull Request - State: closed - Opened by gouttegd 6 months ago

#1049 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago

#1048 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago

#1047 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago

#1046 - Mirroring of a mapping set should honour the `MIR` variable

Issue - State: open - Opened by gouttegd 7 months ago - 1 comment
Labels: bug

#1045 - ROBOT custom plugins issue from within make and outside make

Issue - State: closed - Opened by matentzn 7 months ago - 2 comments

#1044 - Ensure that ROBOT plugin dir exists before download

Pull Request - State: closed - Opened by matentzn 7 months ago - 11 comments
Labels: hotfix

#1043 - Set `--named-classes-only` for reduce by default

Issue - State: open - Opened by matentzn 7 months ago - 9 comments

#1042 - Add mermaid 2 to ODK docs

Pull Request - State: closed - Opened by matentzn 7 months ago - 1 comment

#1041 - Hard time trying to migrate an existing ontology

Issue - State: closed - Opened by luanfg 7 months ago - 6 comments

#1040 - Comment out table reader from mkdocs.yml

Pull Request - State: closed - Opened by matentzn 7 months ago
Labels: hotfix

#1039 - Find a standard way to document python dependencies that are out of scope for ODK

Issue - State: open - Opened by matentzn 7 months ago - 2 comments
Labels: minor

#1038 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago

#1037 - Proposed change of ontology IRIs and version IRIs

Issue - State: closed - Opened by gouttegd 7 months ago - 10 comments
Labels: random musing

#1036 - Publishing SSSOM mapping sets is broken

Issue - State: open - Opened by gouttegd 7 months ago - 2 comments
Labels: bug

#1035 - Publishing SSSOM mapping sets should not be a "all-or-nothing" choice

Issue - State: open - Opened by gouttegd 7 months ago - 6 comments
Labels: enhancement

#1034 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago

#1033 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 7 months ago

#1032 - Add semsimian explicitly to ODK

Pull Request - State: closed - Opened by matentzn 7 months ago

#1031 - Reinstate class-count-by-prefix query

Pull Request - State: closed - Opened by matentzn 7 months ago
Labels: hotfix

#1030 - Could not find `class-count-by-prefix.sparql`

Issue - State: closed - Opened by anitacaron 8 months ago

#1029 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago - 1 comment

#1028 - bug report - "table-reader" plugin is not installed

Issue - State: open - Opened by adeans 8 months ago - 6 comments

#1027 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago - 1 comment

#1026 - Add correct default and casing to release_annotate_inferred_axioms

Pull Request - State: closed - Opened by matentzn 8 months ago - 1 comment

#1025 - Add semsimian as fixed dependency

Pull Request - State: closed - Opened by matentzn 8 months ago

#1023 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago

#1022 - HOTFIX: Fix the qc.yml to not run mirrors

Pull Request - State: closed - Opened by matentzn 8 months ago - 1 comment

#1021 - Update CHANGELOG.md

Pull Request - State: closed - Opened by matentzn 8 months ago - 1 comment

#1020 - Change default of base_merge_drop_equivalent_class_axioms

Pull Request - State: closed - Opened by matentzn 8 months ago

#1019 - Translations: Bugfix, drop columns, new defaults

Pull Request - State: closed - Opened by matentzn 8 months ago - 1 comment

#1018 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago

#1017 - Secret-passing mechanism

Issue - State: open - Opened by gouttegd 8 months ago - 1 comment
Labels: enhancement

#1016 - Add clarification re Basic modules

Issue - State: open - Opened by cmungall 8 months ago

#1015 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago

#1014 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago

#1013 - Add a `run_as_root` project configuration option.

Pull Request - State: closed - Opened by gouttegd 8 months ago

#1012 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago

#1011 - Get version informations from within the ODK image.

Pull Request - State: closed - Opened by gouttegd 8 months ago - 1 comment

#1010 - Ensure temporary directory exists

Pull Request - State: closed - Opened by gouttegd 8 months ago - 1 comment

#1009 - Update the documentation on ROBOT plugins.

Pull Request - State: closed - Opened by gouttegd 8 months ago - 7 comments
Labels: documentation

#1008 - Upgrade the base system to 24.04

Issue - State: open - Opened by gouttegd 8 months ago - 2 comments

#1007 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago

#1006 - Add international edition to ODK

Pull Request - State: closed - Opened by matentzn 8 months ago - 1 comment

#1005 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 8 months ago

#1004 - Fix the cleaning up rule.

Pull Request - State: closed - Opened by gouttegd 8 months ago

#994 - Add .gitkeep to ensure template directory is always present.

Pull Request - State: closed - Opened by joeflack4 9 months ago - 3 comments
Labels: bug

#990 - Make qc.yml ODK managed by default

Pull Request - State: closed - Opened by matentzn 9 months ago - 2 comments

#988 - OAK Validation workflow

Pull Request - State: open - Opened by anitacaron 9 months ago - 1 comment

#987 - Update printout during debug mode

Pull Request - State: open - Opened by matentzn 9 months ago

#986 - Update relationgraph to 2.3.2

Pull Request - State: open - Opened by matentzn 9 months ago - 1 comment

#985 - Add `$(ONT)-edit` as input to templates used in components

Issue - State: open - Opened by anitacaron 10 months ago - 1 comment

#984 - Update constraints.txt

Pull Request - State: open - Opened by github-actions[bot] 10 months ago

#983 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago

#982 - Ensure run.sh properly reports failure.

Pull Request - State: closed - Opened by gouttegd 10 months ago

#981 - `run.sh` should return an error code upon failure

Issue - State: closed - Opened by gouttegd 10 months ago - 1 comment
Labels: bug

#980 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago

#979 - Remove hard coded ODK version in github action container

Pull Request - State: closed - Opened by anitacaron 10 months ago

#978 - Update URL to show CI status badge

Pull Request - State: closed - Opened by anitacaron 10 months ago

#977 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago

#976 - Fix and refresh schema docs

Pull Request - State: closed - Opened by matentzn 10 months ago - 3 comments

#975 - First draft of ODK Documentation Revamp

Pull Request - State: closed - Opened by matentzn 10 months ago - 1 comment

#974 - Add filter only `product.annotation_properties` for each import

Pull Request - State: closed - Opened by anitacaron 10 months ago - 1 comment

#973 - Allow refreshing the mirrors under IMP=false.

Pull Request - State: closed - Opened by gouttegd 11 months ago - 5 comments

#972 - Update SSSOM-Java to latest version.

Pull Request - State: closed - Opened by gouttegd 11 months ago

#971 - Improve documentation of module types

Issue - State: open - Opened by jamesaoverton 11 months ago - 1 comment

#970 - Remove unused mireot test

Issue - State: open - Opened by jamesaoverton 11 months ago

#969 - Distribute OBO context / and extended prefix map in ODK

Issue - State: open - Opened by matentzn 11 months ago - 3 comments

#968 - Deliver ROBOT plugins in ODK

Pull Request - State: closed - Opened by gouttegd 11 months ago - 4 comments

#967 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 11 months ago

#966 - Issue voting: Make sure your issue is on top!

Issue - State: closed - Opened by matentzn 11 months ago

#965 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 11 months ago

#963 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 11 months ago

#963 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 11 months ago

#962 - Update sssom py dependency (pip) and pin

Pull Request - State: closed - Opened by matentzn 11 months ago

#962 - Update sssom py dependency (pip) and pin

Pull Request - State: closed - Opened by matentzn 11 months ago

#961 - Move sssom-py dependency first and pin higher version

Pull Request - State: closed - Opened by matentzn 11 months ago

#960 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 11 months ago

#959 - Update constraints.txt

Pull Request - State: closed - Opened by github-actions[bot] 11 months ago