Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / illumina/nirvana issues and pull requests

#100 - Multiple entries for the same variant in custom databases

Issue - State: open - Opened by algarsi3 almost 2 years ago - 1 comment

#100 - Multiple entries for the same variant in custom databases

Issue - State: open - Opened by algarsi3 almost 2 years ago - 1 comment

#99 - App crash if the chromosome name in -q is not present in the index

Issue - State: closed - Opened by Griffan almost 2 years ago - 1 comment

#98 - How to update dbsnp version?

Issue - State: closed - Opened by Griffan almost 2 years ago - 1 comment

#97 - Annotation of Structural Variants Unclear

Issue - State: open - Opened by DarioS almost 2 years ago

#97 - Annotation of Structural Variants Unclear

Issue - State: open - Opened by DarioS almost 2 years ago

#95 - Error in output format: the variantFrequencies field of the samples

Issue - State: open - Opened by algarsi3 about 2 years ago - 1 comment

#95 - Error in output format: the variantFrequencies field of the samples

Issue - State: open - Opened by algarsi3 about 2 years ago - 1 comment

#94 - Version 3.2.x branch no genes section in JSON

Issue - State: open - Opened by olingerc about 2 years ago

#94 - Version 3.2.x branch no genes section in JSON

Issue - State: open - Opened by olingerc about 2 years ago

#93 - Bump Newtonsoft.Json from 13.0.1 to 13.0.2 in /Cloud

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#93 - Bump Newtonsoft.Json from 13.0.1 to 13.0.2 in /Cloud

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#92 - Bump Newtonsoft.Json from 13.0.1 to 13.0.2 in /Phantom

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#92 - Bump Newtonsoft.Json from 13.0.1 to 13.0.2 in /Phantom

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#91 - Bump Newtonsoft.Json from 13.0.1 to 13.0.2 in /Jasix

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#89 - where is the Nirvana_UGA.tsv file

Issue - State: closed - Opened by vaksmaz over 2 years ago - 1 comment

#89 - where is the Nirvana_UGA.tsv file

Issue - State: closed - Opened by vaksmaz over 2 years ago - 1 comment

#88 - Open reading frame in MNVs

Issue - State: closed - Opened by b-math over 2 years ago - 3 comments

#88 - Open reading frame in MNVs

Issue - State: closed - Opened by b-math over 2 years ago - 3 comments

#87 - Illegal Instruction

Issue - State: open - Opened by alfonso-lam over 2 years ago - 3 comments

#87 - Illegal Instruction

Issue - State: open - Opened by alfonso-lam over 2 years ago - 3 comments

#86 - Looking for the within-callset AC, AN, AF for multi-sample VCF

Issue - State: closed - Opened by bw2 over 2 years ago - 1 comment

#85 - Data for VariantStudio

Issue - State: closed - Opened by alfonso-lam over 2 years ago - 1 comment

#85 - Data for VariantStudio

Issue - State: closed - Opened by alfonso-lam over 2 years ago - 1 comment

#84 - [Feature Request] Docker image for latest NIRVANA version

Issue - State: closed - Opened by LeeTL1220 over 2 years ago - 5 comments

#83 - [Feature Request] Additional info during ClinVar parsing

Issue - State: open - Opened by olingerc over 2 years ago - 4 comments
Labels: enhancement

#83 - [Feature Request] Additional info during ClinVar parsing

Issue - State: open - Opened by olingerc over 2 years ago - 4 comments
Labels: enhancement

#82 - 3.18.1 removes option "disable-recomposition". Not in release notes.

Issue - State: closed - Opened by olingerc over 2 years ago - 2 comments

#82 - 3.18.1 removes option "disable-recomposition". Not in release notes.

Issue - State: closed - Opened by olingerc over 2 years ago - 2 comments

#81 - Latest release (3.18.1) does not include Downloader

Issue - State: closed - Opened by olingerc over 2 years ago - 5 comments

#81 - Latest release (3.18.1) does not include Downloader

Issue - State: closed - Opened by olingerc over 2 years ago - 5 comments

#79 - Object reference not set to an instance of an object.

Issue - State: closed - Opened by biodetective over 2 years ago - 3 comments

#79 - Object reference not set to an instance of an object.

Issue - State: closed - Opened by biodetective over 2 years ago - 3 comments

#78 - ERROR: Object reference not set to an instance of an object.

Issue - State: closed - Opened by MinjiaLU over 2 years ago - 2 comments

#78 - ERROR: Object reference not set to an instance of an object.

Issue - State: closed - Opened by MinjiaLU over 2 years ago - 2 comments

#77 - Gene referenced in transcript not present in genes section

Issue - State: open - Opened by olingerc almost 3 years ago - 2 comments

#76 - hg38 gerpScore database?

Issue - State: closed - Opened by hurrialice almost 3 years ago - 4 comments

#74 - Apple M1 : illegal hardware instruction

Issue - State: open - Opened by jossefaz almost 3 years ago

#74 - Apple M1 : illegal hardware instruction

Issue - State: open - Opened by jossefaz almost 3 years ago

#73 - Jasix Error

Issue - State: closed - Opened by malnirav almost 3 years ago - 7 comments

#73 - Jasix Error

Issue - State: closed - Opened by malnirav almost 3 years ago - 7 comments

#72 - New variants added to my annotated VCF?

Issue - State: closed - Opened by anleopa almost 3 years ago - 1 comment

#72 - New variants added to my annotated VCF?

Issue - State: closed - Opened by anleopa almost 3 years ago - 1 comment

#71 - How can I add my own database into Nirvana databases

Issue - State: closed - Opened by kpalanikannan almost 3 years ago - 1 comment

#71 - How can I add my own database into Nirvana databases

Issue - State: closed - Opened by kpalanikannan almost 3 years ago - 1 comment

#70 - How to update GRCh38 databases

Issue - State: closed - Opened by geocarvalho almost 3 years ago - 2 comments

#70 - How to update GRCh38 databases

Issue - State: closed - Opened by geocarvalho almost 3 years ago - 2 comments

#69 - JSON schema for Nirvana output?

Issue - State: closed - Opened by Redmar-van-den-Berg almost 3 years ago - 1 comment

#69 - JSON schema for Nirvana output?

Issue - State: closed - Opened by Redmar-van-den-Berg almost 3 years ago - 1 comment

#68 - Download GRCh38 databases for version 3.2.6

Issue - State: closed - Opened by geocarvalho almost 3 years ago - 3 comments

#68 - Download GRCh38 databases for version 3.2.6

Issue - State: closed - Opened by geocarvalho almost 3 years ago - 3 comments

#67 - Missing field PS from FORMAT

Issue - State: closed - Opened by olingerc almost 3 years ago - 2 comments

#67 - Missing field PS from FORMAT

Issue - State: closed - Opened by olingerc almost 3 years ago - 2 comments

#66 - Error creating custom gene file format

Issue - State: closed - Opened by anleopa almost 3 years ago - 1 comment

#66 - Error creating custom gene file format

Issue - State: closed - Opened by anleopa almost 3 years ago - 1 comment

#65 - JSONDecodeError: Expecting property name enclosed in double quotes

Issue - State: closed - Opened by matteofloris over 3 years ago - 7 comments

#65 - JSONDecodeError: Expecting property name enclosed in double quotes

Issue - State: closed - Opened by matteofloris over 3 years ago - 7 comments

#64 - I'd like to use the latest version of gnomAD or at least version 3.0.

Issue - State: closed - Opened by RoriCremer over 3 years ago - 1 comment

#64 - I'd like to use the latest version of gnomAD or at least version 3.0.

Issue - State: closed - Opened by RoriCremer over 3 years ago - 1 comment

#63 - Update SAUtils for Cosmic

Pull Request - State: open - Opened by heseber over 3 years ago

#63 - Update SAUtils for Cosmic

Pull Request - State: open - Opened by heseber over 3 years ago

#62 - MergedCosmicReader needs an update for new Cosmic releases

Issue - State: closed - Opened by heseber over 3 years ago - 5 comments

#62 - MergedCosmicReader needs an update for new Cosmic releases

Issue - State: closed - Opened by heseber over 3 years ago - 5 comments

#61 - SAUtils conflicting entries in custom annotation

Issue - State: closed - Opened by heseber over 3 years ago - 2 comments

#59 - Unable to clone git?

Issue - State: closed - Opened by vaipathak over 3 years ago

#58 - Nirvana_UGA.tsv file?

Issue - State: closed - Opened by ceftriaxoneBGD over 3 years ago - 1 comment

#58 - Nirvana_UGA.tsv file?

Issue - State: closed - Opened by ceftriaxoneBGD over 3 years ago - 1 comment

#57 - MNVs variants without variantFrequencies annotation

Issue - State: closed - Opened by geocarvalho over 3 years ago - 1 comment

#57 - MNVs variants without variantFrequencies annotation

Issue - State: closed - Opened by geocarvalho over 3 years ago - 1 comment

#56 - Choice of version?

Issue - State: closed - Opened by JFL9421 over 3 years ago - 1 comment

#56 - Choice of version?

Issue - State: closed - Opened by JFL9421 over 3 years ago - 1 comment

#55 - SAUtils conflicting entries in custom annotation

Issue - State: closed - Opened by IvantheDugtrio over 3 years ago - 3 comments

#55 - SAUtils conflicting entries in custom annotation

Issue - State: closed - Opened by IvantheDugtrio over 3 years ago - 3 comments

#54 - Unable to build on MacOS (or use the binaries)

Issue - State: open - Opened by bw2 over 3 years ago

#54 - Unable to build on MacOS (or use the binaries)

Issue - State: open - Opened by bw2 over 3 years ago

#53 - Build Error

Issue - State: open - Opened by LvLH over 3 years ago

#53 - Build Error

Issue - State: open - Opened by LvLH over 3 years ago

#52 - Comparison between Nirvana 3.2.3 and 3.2.2

Pull Request - State: closed - Opened by MichaelStromberg almost 4 years ago

#52 - Comparison between Nirvana 3.2.3 and 3.2.2

Pull Request - State: closed - Opened by MichaelStromberg almost 4 years ago

#51 - Input string was not in a correct format

Issue - State: closed - Opened by AdamuUu almost 4 years ago - 3 comments

#51 - Input string was not in a correct format

Issue - State: closed - Opened by AdamuUu almost 4 years ago - 3 comments

#50 - Incorrect transcript hgvsc annotations

Issue - State: closed - Opened by michaelsykes almost 4 years ago - 3 comments

#50 - Incorrect transcript hgvsc annotations

Issue - State: closed - Opened by michaelsykes almost 4 years ago - 3 comments

#49 - Cytogenetic bands error when annotating COVID-19 VCF

Issue - State: open - Opened by charbel-gem almost 4 years ago - 5 comments

#48 - NIRVANA output missing genes.hgncid

Issue - State: closed - Opened by LeeTL1220 almost 4 years ago - 4 comments
Labels: documentation

#48 - NIRVANA output missing genes.hgncid

Issue - State: closed - Opened by LeeTL1220 almost 4 years ago - 4 comments
Labels: documentation

#47 - "Illegal instruction" when running on NAS (x86_64) Ubuntu 18.04.5 LTS

Issue - State: closed - Opened by sorgoz almost 4 years ago - 3 comments

#47 - "Illegal instruction" when running on NAS (x86_64) Ubuntu 18.04.5 LTS

Issue - State: closed - Opened by sorgoz almost 4 years ago - 3 comments

#46 - Docker images for Nirvana 3.14+

Issue - State: closed - Opened by LeeTL1220 almost 4 years ago - 6 comments

#46 - Docker images for Nirvana 3.14+

Issue - State: closed - Opened by LeeTL1220 almost 4 years ago - 6 comments

#45 - parse json to csv

Issue - State: open - Opened by fanyucai1 almost 4 years ago - 1 comment

#45 - parse json to csv

Issue - State: open - Opened by fanyucai1 almost 4 years ago - 1 comment