hetio/hetionet issues and pull requests

#58 - Inquiry about metapaths from 2017 Paper "Systematic Integration of Biomedical Knowledge Prioritizes Drugs for Repurposing"

Issue - State: closed - Opened by ferry309 about 1 year ago - 7 comments

#57 - Speeding up data import to Neo4j v5 and CSV format data

Issue - State: open - Opened by nickzren about 1 year ago - 2 comments

#56 - What does it mean if something up regulates a disease in this context?

Issue - State: closed - Opened by ayujain04 over 1 year ago - 3 comments

#55 - Question on metrics

Issue - State: closed - Opened by ayujain04 over 1 year ago - 1 comment

#54 - Docker compatibility question

Issue - State: closed - Opened by ayujain04 over 1 year ago - 4 comments

#53 - Connectivity Search Automated Query Question

Issue - State: closed - Opened by ayujain04 over 1 year ago - 8 comments

#52 - Do any relations imply another relation?

Issue - State: open - Opened by ejin700 over 1 year ago - 1 comment

#51 - Cannot map non-existing file

Issue - State: closed - Opened by franklinhe over 1 year ago - 5 comments

#50 - Mapping to original databases

Issue - State: closed - Opened by yncui-nju over 1 year ago - 2 comments

#49 - Hetionet Browser is down

Issue - State: open - Opened by Travis-Barton about 2 years ago - 7 comments

#49 - Hetionet Browser is down

Issue - State: open - Opened by Travis-Barton about 2 years ago - 4 comments

#48 - neo4j website down

Issue - State: closed - Opened by jromanowska about 2 years ago - 6 comments

#48 - neo4j website down

Issue - State: closed - Opened by jromanowska about 2 years ago - 6 comments

#47 - graph.db database offline in neo4j

Issue - State: open - Opened by tongren3292 over 2 years ago - 3 comments

#47 - graph.db database offline in neo4j

Issue - State: open - Opened by tongren3292 over 2 years ago - 3 comments

#46 - Updated TSV version

Issue - State: closed - Opened by LucaCappelletti94 over 2 years ago - 6 comments

#46 - Updated TSV version

Issue - State: closed - Opened by LucaCappelletti94 over 2 years ago - 6 comments

#45 - Neo4J instance down (?)

Issue - State: closed - Opened by DimitrisAlivas over 2 years ago - 7 comments

#45 - Neo4J instance down (?)

Issue - State: closed - Opened by DimitrisAlivas over 2 years ago - 7 comments

#44 - http://neo4j.het.io/browser/ time out

Issue - State: closed - Opened by yingding almost 3 years ago - 4 comments

#44 - http://neo4j.het.io/browser/ time out

Issue - State: closed - Opened by yingding almost 3 years ago - 4 comments

#43 - Providing a dump version of Hetionet

Issue - State: open - Opened by schatzkara about 3 years ago - 11 comments

#42 - How to add new disease and anatomy nodes

Issue - State: open - Opened by Vittoria9 over 3 years ago - 2 comments

#42 - How to add new disease and anatomy nodes

Issue - State: open - Opened by Vittoria9 over 3 years ago - 2 comments

#41 - Question About Hetionet's Dictionary

Issue - State: closed - Opened by chhyunch over 3 years ago - 3 comments

#41 - Question About Hetionet's Dictionary

Issue - State: closed - Opened by chhyunch over 3 years ago - 3 comments

#40 - Multiple Match Queries Not Working

Issue - State: closed - Opened by thomasleb0n over 3 years ago - 2 comments

#39 - Local files

Issue - State: closed - Opened by victorconan over 3 years ago - 2 comments

#39 - Local files

Issue - State: closed - Opened by victorconan over 3 years ago - 2 comments

#38 - NEO4J Hetionet explorer is not working

Issue - State: closed - Opened by tsarfaty-lab over 3 years ago - 4 comments

#38 - NEO4J Hetionet explorer is not working

Issue - State: closed - Opened by tsarfaty-lab over 3 years ago - 4 comments

#37 - Password required for http://neo4j.het.io/browser/

Issue - State: closed - Opened by mlazo almost 4 years ago - 3 comments

#36 - Tweaks based on Google Cloud Platform deployment

Pull Request - State: closed - Opened by dongbohu almost 4 years ago - 1 comment

#36 - Tweaks based on Google Cloud Platform deployment

Pull Request - State: closed - Opened by dongbohu almost 4 years ago - 1 comment

#35 - Migrate neo4j.het.io hosting from AWS to GCP

Issue - State: closed - Opened by dhimmel almost 4 years ago - 19 comments

#35 - Migrate neo4j.het.io hosting from AWS to GCP

Issue - State: closed - Opened by dhimmel almost 4 years ago - 19 comments

#34 - Reproducing the creation of hetionet

Issue - State: closed - Opened by olszewskip about 4 years ago - 2 comments

#34 - Reproducing the creation of hetionet

Issue - State: closed - Opened by olszewskip about 4 years ago - 2 comments

#33 - upgrade neo4j to 4.0.6

Pull Request - State: open - Opened by dhimmel over 4 years ago - 1 comment

#32 - Unable to import "graph.db" in Neo4j 4.0.4

Issue - State: open - Opened by jshubhangi2697 over 4 years ago - 5 comments

#32 - Unable to import "graph.db" in Neo4j 4.0.4

Issue - State: open - Opened by jshubhangi2697 over 4 years ago - 5 comments

#31 - How to resolve pathway identifiers?

Issue - State: open - Opened by cthoyt over 4 years ago - 1 comment

#31 - How to resolve pathway identifiers?

Issue - State: open - Opened by cthoyt over 4 years ago - 1 comment

#30 - Some 'Diseases' classified as 'Side Effects'

Issue - State: closed - Opened by mzaleski1 over 4 years ago - 3 comments

#29 - Connecting GWAS database

Issue - State: open - Opened by healthbitai over 4 years ago - 3 comments

#29 - Connecting GWAS database

Issue - State: open - Opened by healthbitai over 4 years ago - 3 comments

#28 - Provenance for some CbP relationships is lost during condense() operation

Issue - State: open - Opened by cthoyt over 4 years ago - 3 comments

#28 - Provenance for some CbP relationships is lost during condense() operation

Issue - State: open - Opened by cthoyt over 4 years ago - 3 comments

#27 - Include BEL export of Hetionet

Issue - State: closed - Opened by cthoyt over 4 years ago - 5 comments

#27 - Include BEL export of Hetionet

Issue - State: closed - Opened by cthoyt over 4 years ago - 5 comments

#26 - Upgrade neo4j to 3.5.12 community

Pull Request - State: closed - Opened by dhimmel about 5 years ago - 3 comments

#26 - Upgrade neo4j to 3.5.12 community

Pull Request - State: closed - Opened by dhimmel about 5 years ago - 3 comments

#25 - neo4j.het.io database access not available

Issue - State: closed - Opened by jdauvill about 5 years ago - 10 comments

#25 - neo4j.het.io database access not available

Issue - State: closed - Opened by jdauvill about 5 years ago - 10 comments

#24 - Add pre/post renewal hooks scripts

Pull Request - State: closed - Opened by dongbohu over 5 years ago - 3 comments

#24 - Add pre/post renewal hooks scripts

Pull Request - State: closed - Opened by dongbohu over 5 years ago - 3 comments

#23 - Make implied directed edges explicit

Issue - State: open - Opened by vincerubinetti over 5 years ago - 1 comment

#23 - Make implied directed edges explicit

Issue - State: open - Opened by vincerubinetti over 5 years ago - 1 comment

#22 - Convert permutation hetnet to networkx

Issue - State: open - Opened by lingling93 over 5 years ago - 3 comments

#22 - Convert permutation hetnet to networkx

Issue - State: open - Opened by lingling93 over 5 years ago - 3 comments

#21 - New "docker run" parameters

Pull Request - State: closed - Opened by dongbohu over 5 years ago - 1 comment

#21 - New "docker run" parameters

Pull Request - State: closed - Opened by dongbohu over 5 years ago - 1 comment

#20 - Use "apt-get" in cron script

Pull Request - State: closed - Opened by dongbohu over 5 years ago - 2 comments

#20 - Use "apt-get" in cron script

Pull Request - State: closed - Opened by dongbohu over 5 years ago - 2 comments

#19 - neo4j-hetionet deployment

Pull Request - State: closed - Opened by dongbohu over 5 years ago - 3 comments

#19 - neo4j-hetionet deployment

Pull Request - State: closed - Opened by dongbohu over 5 years ago - 3 comments

#18 - Improve consistency and accessibility of metanode colors

Pull Request - State: closed - Opened by vincerubinetti over 5 years ago - 6 comments

#17 - Json version of graphstyle.grass

Pull Request - State: closed - Opened by vincerubinetti over 5 years ago - 2 comments

#17 - Json version of graphstyle.grass

Pull Request - State: closed - Opened by vincerubinetti over 5 years ago - 2 comments

#16 - Add json definitions file

Pull Request - State: closed - Opened by vincerubinetti over 5 years ago - 7 comments

#16 - Add json definitions file

Pull Request - State: closed - Opened by vincerubinetti over 5 years ago - 7 comments

#15 - Migrating the Hetionet Neo4j Browser to Greene Lab infrastructure

Issue - State: closed - Opened by dhimmel over 5 years ago - 4 comments

#15 - Migrating the Hetionet Neo4j Browser to Greene Lab infrastructure

Issue - State: closed - Opened by dhimmel over 5 years ago - 4 comments

#14 - neo4j.het.io database down on 2018-12-19

Issue - State: closed - Opened by im281 almost 6 years ago - 1 comment

#14 - neo4j.het.io database down on 2018-12-19

Issue - State: closed - Opened by im281 almost 6 years ago - 1 comment

#13 - Add hetmat matrix archives

Pull Request - State: closed - Opened by dhimmel about 6 years ago

#13 - Add hetmat matrix archives

Pull Request - State: closed - Opened by dhimmel about 6 years ago

#12 - Rewriting repo history to use Git LFS

Issue - State: closed - Opened by dhimmel about 6 years ago - 3 comments

#12 - Rewriting repo history to use Git LFS

Issue - State: closed - Opened by dhimmel about 6 years ago - 3 comments

#11 - Add hetmat matrix archives

Pull Request - State: closed - Opened by dhimmel about 6 years ago

#11 - Add hetmat matrix archives

Pull Request - State: closed - Opened by dhimmel about 6 years ago

#10 - Neo4j Browser database access not available since 2018-10-12

Issue - State: closed - Opened by rajarshd about 6 years ago - 4 comments

#10 - Neo4j Browser database access not available since 2018-10-12

Issue - State: closed - Opened by rajarshd about 6 years ago - 4 comments

#9 - neo4j.het.io down as of 2018-06-13

Issue - State: closed - Opened by dhimmel over 6 years ago - 3 comments

#9 - neo4j.het.io down as of 2018-06-13

Issue - State: closed - Opened by dhimmel over 6 years ago - 3 comments

#8 - Questions about Hetionet and computations on Hetionet

Issue - State: closed - Opened by semihsalihoglu-uw over 6 years ago - 6 comments

#8 - Questions about Hetionet and computations on Hetionet

Issue - State: closed - Opened by semihsalihoglu-uw over 6 years ago - 6 comments

#7 - Are there any good aggregated queries on the database?

Issue - State: closed - Opened by wuyinjun-1993 over 6 years ago - 11 comments

#7 - Are there any good aggregated queries on the database?

Issue - State: closed - Opened by wuyinjun-1993 over 6 years ago - 11 comments

#6 - Hetionet to cytoscape problems

Issue - State: closed - Opened by jromanowska over 7 years ago - 8 comments

#6 - Hetionet to cytoscape problems

Issue - State: closed - Opened by jromanowska over 7 years ago - 8 comments

#5 - neo4j.het.io runs out of memory on random relationship query

Issue - State: closed - Opened by dhimmel over 7 years ago - 1 comment

#5 - neo4j.het.io runs out of memory on random relationship query

Issue - State: closed - Opened by dhimmel over 7 years ago - 1 comment

#4 - Neo4j error: "Failed to generate JSON output"

Issue - State: closed - Opened by dhimmel almost 8 years ago

#4 - Neo4j error: "Failed to generate JSON output"

Issue - State: closed - Opened by dhimmel almost 8 years ago

#3 - Can't run-docker.sh [Ubuntu 16.04, Docker 1.12.5]

Issue - State: closed - Opened by zeluspudding almost 8 years ago - 4 comments

#3 - Can't run-docker.sh [Ubuntu 16.04, Docker 1.12.5]

Issue - State: closed - Opened by zeluspudding almost 8 years ago - 4 comments

#2 - Neo4j configuration updates needed for 3.1 Docker

Issue - State: closed - Opened by dhimmel almost 8 years ago

#2 - Neo4j configuration updates needed for 3.1 Docker

Issue - State: closed - Opened by dhimmel almost 8 years ago

#1 - Neo4j download overwrites existing graph.db

Issue - State: closed - Opened by gayanadarajan about 8 years ago - 4 comments

GitHub / hetio/hetionet issues and pull requests