Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / hepcat72/vcfsamplecompare issues and pull requests

#27 - Add errors about missing required input format components

Issue - State: open - Opened by hepcat72 over 3 years ago
Labels: enhancement, high priority

#26 - VcfSampleCompare - empty output with warnings

Issue - State: open - Opened by nevosmic over 3 years ago - 8 comments

#25 - Help with vcf format

Issue - State: closed - Opened by IsabelFE over 3 years ago - 2 comments

#24 - Add pair IDs to the file header

Issue - State: open - Opened by hepcat72 about 5 years ago
Labels: enhancement, medium priority

#23 - Files merged via `bcftools merge` can result in errors

Issue - State: closed - Opened by hepcat72 about 5 years ago - 1 comment
Labels: bug, high priority

#22 - Add an overall weighted score

Issue - State: open - Opened by hepcat72 almost 6 years ago
Labels: enhancement, low priority

#21 - Add a pair summary at the top of the output in a comment section

Issue - State: closed - Opened by hepcat72 almost 6 years ago - 7 comments
Labels: enhancement, low priority

#20 - Implement weighted score/sorting

Issue - State: closed - Opened by hepcat72 almost 6 years ago
Labels: duplicate, enhancement, high priority

#19 - Weighted scores for sorting instead of sub-sorting

Issue - State: closed - Opened by hepcat72 almost 6 years ago - 5 comments
Labels: enhancement, high priority

#18 - Allow sample groups to be supplied using column numbers

Issue - State: open - Opened by hepcat72 almost 6 years ago - 4 comments
Labels: enhancement, low priority

#17 - Add tests

Issue - State: closed - Opened by hepcat72 almost 6 years ago
Labels: enhancement, high priority

#16 - Handle the missing data case better

Issue - State: closed - Opened by hepcat72 almost 6 years ago - 1 comment
Labels: bug, low priority

#15 - Handle the case where all obs rats are the same between the 2 groups

Issue - State: closed - Opened by hepcat72 almost 6 years ago - 3 comments
Labels: bug, low priority

#14 - Order the samples in each sample group based on the original order in the vcf file header

Issue - State: closed - Opened by hepcat72 almost 6 years ago
Labels: enhancement, medium priority

#13 - Account for low depth

Issue - State: closed - Opened by hepcat72 almost 6 years ago - 1 comment
Labels: enhancement, high priority

#12 - Add a "penalize depths below" option

Issue - State: closed - Opened by hepcat72 almost 6 years ago
Labels: enhancement, medium priority

#11 - Make the sub-sort be on allelic frequency instead of average depth

Issue - State: closed - Opened by hepcat72 almost 6 years ago - 8 comments
Labels: enhancement, high priority

#10 - Base the score in genotype mode on the ratio of resolution

Issue - State: closed - Opened by hepcat72 almost 6 years ago - 2 comments
Labels: enhancement, high priority

#9 - Base the separation gap on max/min difference instead of the difference in the averages

Issue - State: closed - Opened by hepcat72 almost 6 years ago - 4 comments
Labels: enhancement, high priority

#8 - Make pair identifier unique for groupings when -s not provided

Issue - State: closed - Opened by hepcat72 almost 6 years ago - 4 comments
Labels: enhancement, low priority

#7 - Add algorithm description for sorting & filtering

Issue - State: closed - Opened by hepcat72 almost 6 years ago
Labels: enhancement, high priority

#6 - Set a filter and score value in VCF instead of filtering & sorting

Issue - State: open - Opened by hepcat72 almost 6 years ago
Labels: enhancement, low priority

#5 - Add ploidy option

Issue - State: open - Opened by hepcat72 almost 6 years ago
Labels: enhancement, low priority

#4 - Version 2.0 Changes

Issue - State: closed - Opened by hepcat72 over 6 years ago - 1 comment
Labels: enhancement

#3 - Issue error if bad sample names supplied to -s

Issue - State: closed - Opened by hepcat72 over 7 years ago - 1 comment
Labels: enhancement

#2 - If there's only 1 sample, requiring hits<1 makes no sense

Issue - State: closed - Opened by hepcat72 over 7 years ago - 1 comment
Labels: enhancement

#1 - Add a ratio min difference parameter

Issue - State: closed - Opened by hepcat72 over 7 years ago - 1 comment
Labels: enhancement