Ecosyste.ms: Issues

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GitHub / gyorilab/mira issues and pull requests

#336 - "Stratify" is not generating unique template names

Issue - State: closed - Opened by liunelson 6 months ago - 1 comment

#336 - "Stratify" is not generating unique template names

Issue - State: closed - Opened by liunelson 6 months ago - 1 comment

#335 - Implement model composition

Pull Request - State: closed - Opened by nanglo123 6 months ago

#335 - Implement model composition

Pull Request - State: closed - Opened by nanglo123 6 months ago

#334 - Fix dkg viz edge naming

Pull Request - State: closed - Opened by nanglo123 6 months ago

#334 - Fix dkg viz edge naming

Pull Request - State: closed - Opened by nanglo123 6 months ago

#333 - Add visualization for DKG relations

Pull Request - State: closed - Opened by nanglo123 6 months ago

#333 - Add visualization for DKG relations

Pull Request - State: closed - Opened by nanglo123 6 months ago

#332 - Reimplement stratification logic for parameter consistency

Pull Request - State: closed - Opened by bgyori 7 months ago

#332 - Reimplement stratification logic for parameter consistency

Pull Request - State: closed - Opened by bgyori 7 months ago

#331 - [BUG] Unexpected Stratify behaviour when applied more than once

Issue - State: closed - Opened by liunelson 7 months ago - 3 comments

#331 - [BUG] Unexpected Stratify behaviour when applied more than once

Issue - State: closed - Opened by liunelson 7 months ago - 3 comments

#330 - Fix multiple stratification of templates with excluded concepts

Pull Request - State: closed - Opened by bgyori 7 months ago

#330 - Fix multiple stratification of templates with excluded concepts

Pull Request - State: closed - Opened by bgyori 7 months ago

#328 - Add support for sbml qual models

Pull Request - State: closed - Opened by nanglo123 7 months ago

#328 - Add support for sbml qual models

Pull Request - State: closed - Opened by nanglo123 7 months ago

#326 - Add evaluation scenario 3 notebook and model

Pull Request - State: closed - Opened by bgyori 8 months ago - 1 comment

#325 - Adding scenario 3 notebook and model

Pull Request - State: closed - Opened by sabinala 8 months ago - 1 comment

#325 - Adding scenario 3 notebook and model

Pull Request - State: closed - Opened by sabinala 8 months ago - 1 comment

#324 - Eval sc1 initials

Pull Request - State: closed - Opened by kkaris 8 months ago

#324 - Eval sc1 initials

Pull Request - State: closed - Opened by kkaris 8 months ago

#323 - Evaluation scenario 2

Pull Request - State: closed - Opened by bgyori 8 months ago

#323 - Evaluation scenario 2

Pull Request - State: closed - Opened by bgyori 8 months ago

#322 - creating scenario 3 notebook

Pull Request - State: closed - Opened by sabinala 8 months ago - 1 comment

#322 - creating scenario 3 notebook

Pull Request - State: closed - Opened by sabinala 8 months ago - 1 comment

#321 - Create Notebook for evaluation2024.03 epi_scenario_1 model b

Pull Request - State: closed - Opened by nanglo123 8 months ago

#319 - Update evaluation 2024.03 epi scenario 4 notebook

Pull Request - State: closed - Opened by nanglo123 8 months ago

#319 - Update evaluation 2024.03 epi scenario 4 notebook

Pull Request - State: closed - Opened by nanglo123 8 months ago

#318 - Move evaluation notebooks into dedicated folders

Pull Request - State: closed - Opened by bgyori 8 months ago

#317 - Handle superscripts in expressions

Pull Request - State: closed - Opened by bgyori 8 months ago

#317 - Handle superscripts in expressions

Pull Request - State: closed - Opened by bgyori 8 months ago

#315 - Evaluation epi scenario 1 example model

Pull Request - State: closed - Opened by kkaris 8 months ago

#315 - Evaluation epi scenario 1 example model

Pull Request - State: closed - Opened by kkaris 8 months ago

#314 - Scenario5

Pull Request - State: closed - Opened by bgyori 8 months ago

#314 - Scenario5

Pull Request - State: closed - Opened by bgyori 8 months ago

#313 - Fix observable handling in stock and flow

Pull Request - State: closed - Opened by bgyori 8 months ago

#313 - Fix observable handling in stock and flow

Pull Request - State: closed - Opened by bgyori 8 months ago

#312 - Observables disappear from stockflow and regnet models

Issue - State: closed - Opened by sabinala 8 months ago - 3 comments

#312 - Observables disappear from stockflow and regnet models

Issue - State: closed - Opened by sabinala 8 months ago - 3 comments

#311 - Comparison colors

Pull Request - State: closed - Opened by kkaris 8 months ago

#311 - Comparison colors

Pull Request - State: closed - Opened by kkaris 8 months ago

#310 - Update code in notebooks for LLM ingestion

Pull Request - State: closed - Opened by nanglo123 8 months ago

#310 - Update code in notebooks for LLM ingestion

Pull Request - State: closed - Opened by nanglo123 8 months ago

#309 - Handle float and int in expression constructor

Pull Request - State: closed - Opened by bgyori 8 months ago

#309 - Handle float and int in expression constructor

Pull Request - State: closed - Opened by bgyori 8 months ago

#308 - Fix sign on intrinsic decay for regnet AMR

Pull Request - State: closed - Opened by bgyori 9 months ago - 1 comment

#307 - Inconsistent colours used when plotting `TemplateModelDelta`

Issue - State: closed - Opened by liunelson 9 months ago - 2 comments

#307 - Inconsistent colours used when plotting `TemplateModelDelta`

Issue - State: closed - Opened by liunelson 9 months ago - 2 comments

#306 - Improve assembly and recognition of replications

Pull Request - State: closed - Opened by bgyori 9 months ago

#306 - Improve assembly and recognition of replications

Pull Request - State: closed - Opened by bgyori 9 months ago

#305 - Process ODE semantics from regnet AMR

Pull Request - State: closed - Opened by bgyori 9 months ago

#305 - Process ODE semantics from regnet AMR

Pull Request - State: closed - Opened by bgyori 9 months ago

#304 - Hackathon scenario 6 models read incorrectly as regnets

Issue - State: closed - Opened by sabinala 9 months ago

#304 - Hackathon scenario 6 models read incorrectly as regnets

Issue - State: closed - Opened by sabinala 9 months ago

#303 - Add Hunt model for Scenario 6

Pull Request - State: closed - Opened by bgyori 9 months ago

#303 - Add Hunt model for Scenario 6

Pull Request - State: closed - Opened by bgyori 9 months ago

#302 - Recursively reason over flow control relationships

Pull Request - State: closed - Opened by cthoyt 9 months ago

#301 - Fix TemplateModel json I/O

Pull Request - State: closed - Opened by kkaris 9 months ago

#301 - Fix TemplateModel json I/O

Pull Request - State: closed - Opened by kkaris 9 months ago

#299 - Add epi scenario1 notebook and artifacts

Pull Request - State: closed - Opened by kkaris 9 months ago - 2 comments

#299 - Add epi scenario1 notebook and artifacts

Pull Request - State: closed - Opened by kkaris 9 months ago - 2 comments

#292 - Epi Hackathon Scenario 5 stockflow.json does not pass validator

Issue - State: open - Opened by akruel01 9 months ago - 3 comments

#292 - Epi Hackathon Scenario 5 stockflow.json does not pass validator

Issue - State: open - Opened by akruel01 9 months ago - 3 comments