Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / gyorilab/indra_cogex issues and pull requests

#189 - Add tests for REST API endpoints

Issue - State: open - Opened by kkaris 25 days ago

#188 - Db evidence selection

Pull Request - State: open - Opened by prasham21 25 days ago - 1 comment

#187 - Meta issue: sources lacking a corresponding query in the queries module

Issue - State: open - Opened by kkaris 26 days ago
Labels: enhancement

#186 - Endpoint Queries

Pull Request - State: open - Opened by haohangyan 26 days ago - 1 comment

#185 - Adding bioentity endpoints

Pull Request - State: closed - Opened by pnavada about 2 months ago - 7 comments

#184 - Update `url_for` paths

Pull Request - State: closed - Opened by kkaris about 2 months ago

#183 - Add gif/spinner while backend is loading g/msea results/ Issue #83

Pull Request - State: closed - Opened by prasham21 about 2 months ago

#182 - Make Vue url configurable

Pull Request - State: closed - Opened by kkaris 2 months ago

#181 - Set field type in examples dict directly

Pull Request - State: closed - Opened by kkaris 2 months ago

#180 - Fix Swagger apidocs validation errors

Issue - State: closed - Opened by kkaris 2 months ago - 1 comment
Labels: documentation

#179 - Add source for DepMap codependencies

Pull Request - State: closed - Opened by bgyori 4 months ago

#178 - Add optional source/target name for Relation

Pull Request - State: closed - Opened by bgyori 4 months ago

#177 - Refactor analysis module

Pull Request - State: closed - Opened by prasham21 4 months ago - 2 comments

#176 - Added analysis folder and protein_analysis.py

Pull Request - State: open - Opened by AriaAgarwal 4 months ago

#175 - Add phosphoproteomics explanation notebook

Pull Request - State: closed - Opened by bgyori 5 months ago

#173 - Add disease association notebook

Pull Request - State: open - Opened by AriaAgarwal 5 months ago

#172 - Upgrade to flask_jwt_extended>3

Pull Request - State: closed - Opened by kkaris 6 months ago - 1 comment

#171 - Minor fixes

Pull Request - State: closed - Opened by kkaris 6 months ago

#170 - Gene disease association

Pull Request - State: closed - Opened by AriaAgarwal 6 months ago

#169 - Add version pins to various pyobo calls

Issue - State: open - Opened by kkaris 6 months ago - 4 comments

#168 - Pubmed rels debug

Pull Request - State: closed - Opened by kkaris 6 months ago - 2 comments

#167 - Docs update

Pull Request - State: closed - Opened by kkaris 6 months ago
Labels: documentation

#165 - Fix processors import

Pull Request - State: closed - Opened by kkaris 6 months ago

#164 - Continuous GSEA issues

Issue - State: closed - Opened by bgyori 7 months ago - 2 comments

#163 - Add download to datatables

Pull Request - State: closed - Opened by kkaris 7 months ago - 5 comments

#162 - Fixes related to #160, #161

Pull Request - State: closed - Opened by kkaris 7 months ago - 1 comment

#161 - Discrete GSEA issues

Issue - State: open - Opened by bgyori 7 months ago - 1 comment

#160 - Subnetwork curation issues

Issue - State: closed - Opened by bgyori 7 months ago - 2 comments

#159 - Add wrapper endpoints

Pull Request - State: closed - Opened by kkaris 8 months ago - 2 comments

#158 - Enable local gene list analysis

Issue - State: open - Opened by cthoyt 8 months ago

#157 - Review normalization of terms

Issue - State: open - Opened by bgyori 10 months ago - 4 comments

#156 - Remove scipy dependency constraint

Pull Request - State: closed - Opened by bgyori 10 months ago - 1 comment

#155 - Replacing sleep with poll

Pull Request - State: closed - Opened by jim-sheldon 10 months ago

#154 - Rhea Processor

Issue - State: open - Opened by cthoyt 10 months ago
Labels: Processor

#153 - LOTUS Processor

Issue - State: open - Opened by cthoyt 10 months ago
Labels: Processor

#152 - FooDB processor

Issue - State: open - Opened by cthoyt 10 months ago
Labels: Processor

#151 - PheWAS Processor

Issue - State: open - Opened by cthoyt 10 months ago
Labels: Processor

#150 - Onsides Processor

Issue - State: open - Opened by cthoyt 10 months ago
Labels: Processor

#149 - Dumping updates and data validation

Pull Request - State: closed - Opened by kkaris 11 months ago - 1 comment

#148 - Add GWAS (Genome-Wide Association Studies) Processor

Pull Request - State: closed - Opened by nanglo123 11 months ago - 1 comment

#147 - Add DisGeNet processor

Pull Request - State: closed - Opened by cthoyt 12 months ago

#146 - Improve PMID-based querying

Pull Request - State: closed - Opened by bgyori 12 months ago

#145 - add odinson and gilda grounding for spine

Pull Request - State: open - Opened by svempati21 about 1 year ago - 2 comments

#144 - Improve ClinicalTrials.gov ingest

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#143 - Get MeSH for multiple PMIDs

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#142 - Test frontend after unicode cleaning update

Issue - State: closed - Opened by kkaris about 1 year ago

#141 - Unicode fix

Pull Request - State: closed - Opened by kkaris about 1 year ago

#140 - Use more efficient method to get curations

Pull Request - State: closed - Opened by kkaris about 1 year ago

#139 - Journal info

Pull Request - State: closed - Opened by kkaris over 1 year ago - 2 comments

#138 - Processor & related updates

Pull Request - State: closed - Opened by kkaris over 1 year ago

#137 - Update pathway relation query

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#136 - Dump updates

Pull Request - State: closed - Opened by kkaris over 1 year ago

#135 - Get statements from PubMeds

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#134 - Index id property

Pull Request - State: closed - Opened by kkaris over 1 year ago - 1 comment

#133 - TEST: Update dependencies

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#132 - Unresolvable dependency when testing on Python 3.9

Issue - State: open - Opened by bgyori over 1 year ago - 2 comments

#131 - Add CellMarker source

Pull Request - State: closed - Opened by cthoyt almost 2 years ago
Labels: Processor

#130 - Query: identifying citation pairs for a given statement

Issue - State: open - Opened by cthoyt almost 2 years ago

#129 - Neo4j optimizations, part 1

Pull Request - State: closed - Opened by kkaris almost 2 years ago - 1 comment
Labels: enhancement

#128 - Fix belief bug

Pull Request - State: closed - Opened by kkaris almost 2 years ago - 1 comment

#127 - Potential Performance Improvements

Issue - State: open - Opened by kkaris almost 2 years ago - 1 comment
Labels: enhancement

#126 - Update install configuration

Pull Request - State: closed - Opened by cthoyt almost 2 years ago

#125 - New source: InterPro Domains

Pull Request - State: closed - Opened by cthoyt almost 2 years ago - 3 comments
Labels: Processor

#124 - Unpin scipy

Issue - State: closed - Opened by cthoyt about 2 years ago - 2 comments

#123 - Speed up mesh child terms query

Pull Request - State: closed - Opened by kkaris about 2 years ago

#122 - Slow tests

Issue - State: closed - Opened by bgyori about 2 years ago

#121 - Handle invalid MeSH IDs from ClincalTrials

Pull Request - State: closed - Opened by bgyori about 2 years ago

#120 - Use separate sessions

Pull Request - State: closed - Opened by kkaris about 2 years ago - 2 comments

#119 - Extend enrichment with custom background gene sets

Pull Request - State: closed - Opened by bgyori about 2 years ago - 2 comments

#118 - Fix source counts

Pull Request - State: closed - Opened by kkaris about 2 years ago

#117 - Add slimmed down meta subnetwork query

Pull Request - State: closed - Opened by bgyori about 2 years ago

#116 - Initial implementation of Devon's analysis

Pull Request - State: open - Opened by cthoyt about 2 years ago

#115 - Optimize client functions and use CurationCache

Pull Request - State: closed - Opened by kkaris about 2 years ago

#114 - Fix gene list analysis

Pull Request - State: closed - Opened by cthoyt about 2 years ago

#113 - Fix NIH reporter

Pull Request - State: closed - Opened by kkaris over 2 years ago

#112 - Add phenotypes to README table on relations

Pull Request - State: closed - Opened by kkaris over 2 years ago

#111 - Better unicode handling, remove xrefs from landing page counters

Pull Request - State: closed - Opened by kkaris over 2 years ago

#110 - Assert column types

Pull Request - State: closed - Opened by kkaris over 2 years ago

#109 - DB source exports and ingestion upates

Pull Request - State: closed - Opened by kkaris over 2 years ago - 1 comment

#108 - Downtime page and service update

Pull Request - State: closed - Opened by kkaris over 2 years ago

#107 - Implement auto-download for NIH RePORTER files

Pull Request - State: closed - Opened by bgyori over 2 years ago

#106 - Chat app

Pull Request - State: closed - Opened by kkaris over 2 years ago

#105 - Optimize queries for all relations

Pull Request - State: closed - Opened by bgyori over 2 years ago - 1 comment

#104 - Update curation cache and add dark phosphatases analysis

Pull Request - State: closed - Opened by cthoyt over 2 years ago

#103 - NIH RePORTER integration

Pull Request - State: closed - Opened by bgyori over 2 years ago

#102 - GO parent terms in enrichment analysis

Pull Request - State: closed - Opened by kkaris over 2 years ago - 1 comment

#101 - Speed up enrichment analysis gene set usage

Pull Request - State: closed - Opened by bgyori over 2 years ago

#100 - Medscan fix

Pull Request - State: closed - Opened by kkaris over 2 years ago

#99 - Statement page fix

Pull Request - State: closed - Opened by kkaris over 2 years ago - 3 comments

#98 - Add disease-phenotype and phenotype-gene processors from HPO

Pull Request - State: closed - Opened by cthoyt over 2 years ago - 1 comment
Labels: Processor

#97 - Web service fix

Pull Request - State: closed - Opened by kkaris over 2 years ago

#96 - Add additional flags as a follow-up to #91

Pull Request - State: closed - Opened by cthoyt over 2 years ago - 1 comment

#95 - Fix counter queries

Pull Request - State: closed - Opened by bgyori over 2 years ago

#94 - Chat widget

Pull Request - State: closed - Opened by kkaris over 2 years ago

#93 - Add new query for mutated genes

Pull Request - State: closed - Opened by bgyori over 2 years ago

#92 - Curation cache

Pull Request - State: closed - Opened by kkaris over 2 years ago

#90 - Implement Curation Cache

Issue - State: closed - Opened by kkaris over 2 years ago - 1 comment