Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / gyorilab/emmaa issues and pull requests

#281 - Switch to pytest

Issue - State: open - Opened by kkaris 4 months ago - 1 comment

#280 - Upgrade to `flask_jwt_extended>3`

Pull Request - State: closed - Opened by kkaris 6 months ago - 2 comments

#279 - Pin moto to <5

Pull Request - State: open - Opened by kkaris 6 months ago

#278 - Pin moto

Issue - State: open - Opened by kkaris 6 months ago

#277 - Update tweeting

Pull Request - State: closed - Opened by kkaris over 1 year ago - 2 comments

#276 - Out of date belief scorer used in batch jobs

Issue - State: closed - Opened by kkaris over 1 year ago - 3 comments

#275 - Include nf in large model set

Pull Request - State: closed - Opened by kkaris over 1 year ago

#274 - JavaScript vs Python data representation fix

Pull Request - State: closed - Opened by kkaris almost 2 years ago

#273 - Optimize entity name getting

Pull Request - State: closed - Opened by bgyori about 2 years ago

#272 - Add painmachine to large models for after_update lambda

Pull Request - State: closed - Opened by kkaris about 2 years ago

#271 - Gromet fix

Pull Request - State: closed - Opened by kkaris about 2 years ago

#270 - Check size for Intelligent Tiering

Pull Request - State: closed - Opened by kkaris over 2 years ago

#269 - Specify vue version

Pull Request - State: closed - Opened by kkaris over 2 years ago

#268 - Intelligent tiering for new S3 uploads

Pull Request - State: closed - Opened by kkaris over 2 years ago

#267 - Update chat bubble styles

Pull Request - State: closed - Opened by kkaris over 2 years ago

#266 - EMMAA statement improvements

Pull Request - State: closed - Opened by cthoyt over 2 years ago

#265 - Reimplement `get_stmts_for_gene()`

Pull Request - State: closed - Opened by cthoyt over 2 years ago - 1 comment

#264 - Update undefined behavior on missing condition key

Pull Request - State: closed - Opened by cthoyt over 2 years ago - 3 comments

#263 - Preparation for Pompe Disease model

Pull Request - State: closed - Opened by cthoyt over 2 years ago

#262 - Statement database updates and documentation

Pull Request - State: closed - Opened by dianakolusheva almost 3 years ago

#261 - AWS Lambda functions and documenting the architecture

Pull Request - State: closed - Opened by dianakolusheva almost 3 years ago

#260 - Load figures when requested only

Pull Request - State: closed - Opened by dianakolusheva almost 3 years ago

#259 - Use db to load statements in the API

Pull Request - State: closed - Opened by dianakolusheva almost 3 years ago

#258 - Pathfinding by test

Pull Request - State: closed - Opened by dianakolusheva about 3 years ago

#257 - Bug fixes

Pull Request - State: closed - Opened by dianakolusheva about 3 years ago

#256 - Configure indranet method in model config

Pull Request - State: closed - Opened by dianakolusheva about 3 years ago

#255 - Handle anchor when using loading template

Pull Request - State: closed - Opened by dianakolusheva about 3 years ago - 1 comment

#254 - Fix XDD error

Pull Request - State: closed - Opened by dianakolusheva about 3 years ago

#253 - Tabs

Pull Request - State: closed - Opened by dianakolusheva about 3 years ago

#252 - Agent view

Pull Request - State: closed - Opened by dianakolusheva about 3 years ago

#251 - Fix test redirect URL

Pull Request - State: closed - Opened by dianakolusheva about 3 years ago

#250 - Bug fixes

Pull Request - State: closed - Opened by dianakolusheva about 3 years ago

#249 - Re-introduce adding metadata from Biolookup Service

Pull Request - State: closed - Opened by cthoyt about 3 years ago - 2 comments

#248 - Update biolookup address

Issue - State: closed - Opened by cthoyt about 3 years ago

#247 - Update flask swagger model

Pull Request - State: closed - Opened by dianakolusheva about 3 years ago

#246 - Implement native entity lookup

Pull Request - State: closed - Opened by bgyori about 3 years ago

#245 - Loading

Pull Request - State: closed - Opened by dianakolusheva about 3 years ago - 1 comment

#244 - Add zero initial values to Gromet export

Pull Request - State: closed - Opened by bgyori over 3 years ago

#243 - Fix new invalid statements

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#242 - API

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago - 1 comment

#241 - Add walkthrough tutorial

Pull Request - State: closed - Opened by bgyori over 3 years ago

#240 - Gromet error

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#239 - Optimize stmt evidence page

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#238 - Belief stats and UI

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#237 - All statements filters and sorts

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago - 4 comments

#236 - Gromet uid

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#235 - Install extras_require in docker

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#234 - Query tutorial

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago - 1 comment

#233 - Gromet metadata

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#232 - Catch xdd connection error

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago - 1 comment

#231 - Belief models

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#230 - Fix test loading

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago - 2 comments

#229 - EMMAA to GroMEt

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago - 2 comments

#228 - Annotations

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#227 - REST API

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#226 - Kappa UI

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#225 - Source-target dynamics queries

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#224 - Improve reporting of PybelEdges

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#223 - Use indra_world in EMMAA

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago - 1 comment

#222 - Add progress report

Pull Request - State: closed - Opened by bgyori over 3 years ago

#221 - Extend dynamic queries

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#220 - Model config docs

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago - 1 comment

#219 - Model tests

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#218 - Configurable model updates

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#217 - Chat button and update html

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#216 - EMMAA Statements metadata

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#215 - Fix tests

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#214 - Model subscription notifications

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#213 - Use the bioresolver to look up additional entity metadata

Pull Request - State: closed - Opened by cthoyt over 3 years ago - 1 comment

#212 - Overwrite existing statements

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#211 - Add entity info endpoint

Pull Request - State: closed - Opened by bgyori over 3 years ago

#210 - Fix division by zero

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#209 - Model to tests

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#208 - Disease map

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago - 4 comments

#207 - xDD integration

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#206 - Add hypothesis group to redirect URL

Pull Request - State: closed - Opened by bgyori over 3 years ago

#205 - Fix all statements bug

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#204 - Add endpoint for getting curated statements in model

Pull Request - State: closed - Opened by bgyori over 3 years ago

#203 - Sort statements

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#202 - Improve statement evidence page for multiple statements

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#201 - Hypothesis annotation

Pull Request - State: closed - Opened by dianakolusheva over 3 years ago

#200 - Curations using INDRA DB REST API

Pull Request - State: open - Opened by dianakolusheva almost 4 years ago

#199 - Integrating CLARE chat widget

Pull Request - State: closed - Opened by dianakolusheva almost 4 years ago

#198 - Add better MeSH roots for ontology export

Pull Request - State: closed - Opened by bgyori almost 4 years ago

#197 - Extend ontology export script

Pull Request - State: closed - Opened by bgyori almost 4 years ago

#196 - Queries API

Pull Request - State: closed - Opened by dianakolusheva almost 4 years ago

#195 - Fix page load

Pull Request - State: closed - Opened by dianakolusheva almost 4 years ago

#194 - Doc update

Pull Request - State: closed - Opened by dianakolusheva almost 4 years ago - 1 comment

#193 - New endpoints

Pull Request - State: closed - Opened by dianakolusheva almost 4 years ago - 2 comments

#192 - Paper and Curation tabs

Pull Request - State: closed - Opened by dianakolusheva almost 4 years ago

#191 - Extend documentation mocks

Pull Request - State: closed - Opened by bgyori almost 4 years ago

#190 - Refinements

Pull Request - State: closed - Opened by dianakolusheva almost 4 years ago - 1 comment

#189 - Update handling of output from group_and_sort function.

Pull Request - State: closed - Opened by pagreene almost 4 years ago - 5 comments

#188 - Update grounding in tests

Pull Request - State: closed - Opened by bgyori almost 4 years ago

#187 - Add scripts for custom exports for UI integration

Pull Request - State: closed - Opened by bgyori almost 4 years ago

#186 - Local mode and PyBEL versioning

Pull Request - State: closed - Opened by dianakolusheva almost 4 years ago

#185 - Generate model exports and add download links

Pull Request - State: closed - Opened by bgyori almost 4 years ago

#184 - Import covid19 locally

Pull Request - State: closed - Opened by dianakolusheva almost 4 years ago

#181 - Disable JSON model storage

Pull Request - State: closed - Opened by dianakolusheva about 4 years ago

#176 - Curation JSON-ify

Pull Request - State: closed - Opened by pagreene about 4 years ago