Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / geneontology/wc-gocam-viz issues and pull requests

#72 - PRO entities are exported, but they are not associated with the genes

Issue - State: open - Opened by ValWood 26 days ago - 1 comment
Labels: enhancement, display

#71 - Chemical reference

Pull Request - State: closed - Opened by tmushayahama 24 days ago - 1 comment

#69 - Make the Key more compact/ and/or scalable

Issue - State: open - Opened by ValWood 29 days ago
Labels: display

#68 - Issue 67 chemical change

Pull Request - State: closed - Opened by tmushayahama about 1 month ago - 3 comments

#67 - Change chemical shape to be an oval

Issue - State: closed - Opened by vanaukenk about 1 month ago - 2 comments
Labels: enhancement

#66 - Reference link and icon

Pull Request - State: closed - Opened by tmushayahama about 1 month ago - 2 comments

#65 - Remove gocam-selector: Cleaning unused code and component

Issue - State: open - Opened by tmushayahama about 1 month ago - 2 comments
Labels: needs prioritization, infrastructure

#64 - added pccNode for protein containing complex expand error

Pull Request - State: closed - Opened by tmushayahama about 2 months ago - 2 comments

#63 - Use version specifier in script tag URLs to avoid beta versions

Pull Request - State: closed - Opened by pkalita-lbl about 2 months ago

#62 - Add Icon Support for Stencil Components (any icons)

Issue - State: open - Opened by tmushayahama 2 months ago - 3 comments
Labels: needs prioritization, infrastructure

#61 - Clicking "Expand Protein Complexes" has no effect

Issue - State: open - Opened by pkalita-lbl 2 months ago - 4 comments
Labels: high priority, display

#60 - Legend and Relations revised, few cleanups

Pull Request - State: closed - Opened by tmushayahama 2 months ago - 4 comments

#59 - Revised legend specs

Issue - State: closed - Opened by vanaukenk 2 months ago - 2 comments
Labels: high priority

#56 - Pathway view is missing edges for cases with dual positive and negative regulation

Issue - State: open - Opened by cmungall 4 months ago - 1 comment
Labels: incorrect rendering

#55 - DBREF lib alternative solution?

Issue - State: open - Opened by tmushayahama 3 months ago - 7 comments
Labels: needs prioritization, infrastructure

#54 - Display all relations

Pull Request - State: closed - Opened by tmushayahama 3 months ago - 3 comments

#52 - Name of the chemical (Chebi) in GO-CAM and the widget

Issue - State: open - Opened by ccasalsc 3 months ago - 1 comment
Labels: display

#51 - Loss of links to the publications in the widget new version

Issue - State: open - Opened by pmasson55 3 months ago - 5 comments
Labels: bug

#50 - Survey relations used in GO-CAMs and their corresponding display in the pathway view

Issue - State: closed - Opened by vanaukenk 3 months ago - 7 comments
Labels: question

#49 - The GO-CAM widget doesn't always display indirect evidences

Issue - State: closed - Opened by pmasson55 3 months ago - 2 comments
Labels: bug, high priority

#48 - Version 1.0.1

Pull Request - State: closed - Opened by pkalita-lbl 3 months ago

#47 - Make new release on merged code

Issue - State: closed - Opened by kltm 4 months ago - 1 comment

#46 - Create release and update SOP, to keep all public presentations in sync

Issue - State: open - Opened by kltm 4 months ago - 1 comment
Labels: enhancement

#45 - Optional chaining of cy within invalidateCoordsCache.

Pull Request - State: closed - Opened by dlrice 7 months ago - 5 comments

#44 - Display all complex subunit names?

Issue - State: closed - Opened by ValWood 8 months ago - 3 comments
Labels: display

#43 - Difficult to read metabolic models when all small molecules are displayed

Issue - State: open - Opened by ValWood 8 months ago - 8 comments
Labels: display

#42 - right hand scroll bar not responsive to selected gene

Issue - State: open - Opened by ValWood 8 months ago
Labels: display

#41 - Incorrect relation direction for has_input

Issue - State: closed - Opened by ValWood 8 months ago - 2 comments
Labels: high priority

#40 - causally upstream relations shouldn't be displayed as 'indirect regulation'

Issue - State: closed - Opened by vanaukenk 8 months ago - 1 comment
Labels: bug, high priority

#39 - Viz legend

Pull Request - State: closed - Opened by tmushayahama 8 months ago - 4 comments

#38 - Indirect regulation and constitutively upstream not rendered in the Alliance preview

Issue - State: closed - Opened by PCarme 10 months ago - 6 comments
Labels: bug, high priority

#37 - provides input relationship displays as has_input

Issue - State: closed - Opened by ValWood 9 months ago - 16 comments
Labels: bug, high priority

#36 - possible bug Protein complex

Issue - State: closed - Opened by ValWood 9 months ago - 3 comments

#35 - suggestions for the scrolling widget menu

Issue - State: open - Opened by ValWood 10 months ago - 1 comment
Labels: display

#34 - Add "has_input" and "has_output" relation symbols to legend

Issue - State: closed - Opened by dustine32 12 months ago - 10 comments

#33 - Ambiguous relation for "is_small_mol_activator"

Issue - State: closed - Opened by dustine32 almost 1 year ago - 6 comments
Labels: bug, high priority

#32 - Fix beta issues

Pull Request - State: closed - Opened by pkalita-lbl over 1 year ago

#31 - Misc small identified by preliminary AmiGO integration

Pull Request - State: closed - Opened by pkalita-lbl over 1 year ago

#29 - Allow GO-CAM data to be provided to widget

Pull Request - State: closed - Opened by pkalita-lbl over 1 year ago

#28 - Add GitHub workflows for testing and publishing

Pull Request - State: closed - Opened by pkalita-lbl over 1 year ago

#26 - Use CSS custom properties and CSS parts for styling

Pull Request - State: closed - Opened by pkalita-lbl over 1 year ago

#24 - Alliance instantiation of pathways widget fails in some^H^H^H^H all cases

Issue - State: closed - Opened by kltm over 1 year ago - 8 comments

#23 - Remove Bootstrap dependency

Pull Request - State: closed - Opened by pkalita-lbl over 1 year ago - 6 comments

#22 - Upgrade to Stencil 4

Pull Request - State: closed - Opened by pkalita-lbl over 1 year ago

#21 - Code hygiene for widget: remove code and paths for defunct API

Issue - State: closed - Opened by kltm over 1 year ago - 2 comments

#20 - Add instructions for using NPM package

Pull Request - State: closed - Opened by pkalita-lbl over 1 year ago

#19 - Make data fetching and access more flexible

Issue - State: closed - Opened by pkalita-lbl over 1 year ago

#17 - Consider strategy for better customization of styling

Issue - State: closed - Opened by pkalita-lbl over 1 year ago

#16 - Remove hard dependency on Bootstrap 5

Issue - State: closed - Opened by pkalita-lbl over 1 year ago - 1 comment

#14 - Legend images do not work when used via NPM package

Issue - State: closed - Opened by pkalita-lbl over 1 year ago - 1 comment

#13 - Add documentation on how to use NPM package

Issue - State: closed - Opened by pkalita-lbl over 1 year ago

#12 - Gocam algo

Pull Request - State: closed - Opened by tmushayahama almost 2 years ago

#11 - Gocam algo

Pull Request - State: closed - Opened by tmushayahama about 2 years ago

#9 - change synching event between pathway panel and activity-unit info panels

Issue - State: closed - Opened by thomaspd almost 3 years ago - 1 comment

#8 - Added the BP following part of chain

Pull Request - State: closed - Opened by tmushayahama almost 3 years ago

#6 - Dev

Pull Request - State: closed - Opened by tmushayahama about 3 years ago

#5 - Layout of disconnected entities is too close together

Issue - State: closed - Opened by dustine32 about 3 years ago - 4 comments
Labels: enhancement

#4 - Add special toggle to choose minerva/system instance as source of model data

Issue - State: closed - Opened by dustine32 over 3 years ago - 3 comments

#3 - handover of pathway widget

Issue - State: closed - Opened by cmungall over 3 years ago - 4 comments

#2 - Graph from api

Pull Request - State: closed - Opened by lpalbou over 3 years ago

#1 - Enabling integration in https sites

Issue - State: closed - Opened by lpalbou almost 4 years ago - 2 comments
Labels: enhancement, high priority