Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / geneontology/amigo issues and pull requests

#626 - Untraceable annotation for ZDB-GENE-060818-1

Issue - State: closed - Opened by pgaudet about 3 years ago - 7 comments
Labels: question

#625 - Add templated link for regulates closure in context of isa_partof world

Issue - State: closed - Opened by kltm about 3 years ago - 4 comments
Labels: bug (B: affects usability)

#625 - Add templated link for regulates closure in context of isa_partof world

Issue - State: closed - Opened by kltm about 3 years ago - 4 comments
Labels: bug (B: affects usability)

#624 - Create / produce additional GOlr fields to support default relation change

Issue - State: closed - Opened by kltm about 3 years ago - 6 comments
Labels: bug (B: affects usability)

#624 - Create / produce additional GOlr fields to support default relation change

Issue - State: closed - Opened by kltm about 3 years ago - 6 comments
Labels: bug (B: affects usability)

#623 - Display gene product 2 term relations

Issue - State: open - Opened by hattrill about 3 years ago - 1 comment
Labels: enhancement, relations

#622 - XSS vulnerability in bookmark parameter

Issue - State: closed - Opened by kltm about 3 years ago - 2 comments
Labels: bug (A: showstopper)

#622 - XSS vulnerability in bookmark parameter

Issue - State: closed - Opened by kltm about 3 years ago - 2 comments
Labels: bug (A: showstopper)

#621 - Raise the term number cap in the Matrix tool

Issue - State: open - Opened by ValWood about 3 years ago - 3 comments
Labels: enhancement

#621 - Raise the term number cap in the Matrix tool

Issue - State: open - Opened by ValWood about 3 years ago - 3 comments
Labels: enhancement

#620 - Change default closure to isa_partof from regulates

Issue - State: closed - Opened by cmungall about 3 years ago - 21 comments
Labels: enhancement

#619 - Provision

Pull Request - State: closed - Opened by abessiari about 3 years ago - 17 comments

#618 - Weird display issue in AmiGO?

Issue - State: open - Opened by pgaudet over 3 years ago - 8 comments

#617 - Fixing name clash

Pull Request - State: open - Opened by cmungall over 3 years ago - 1 comment

#616 - Download button is applying wrong filters

Issue - State: open - Opened by pati-ni over 3 years ago - 1 comment
Labels: question

#615 - Bump solr-core from 1.4.0 to 8.8.2 in /golr/tools/one-offs/java

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, java

#615 - Bump solr-core from 1.4.0 to 8.8.2 in /golr/tools/one-offs/java

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, java

#614 - Bump underscore from 1.8.3 to 1.12.1

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#613 - Bump underscore from 1.8.3 to 1.12.1 in /javascript/npm/bbop-widget-set

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#613 - Bump underscore from 1.8.3 to 1.12.1 in /javascript/npm/bbop-widget-set

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#612 - Bump underscore from 1.8.3 to 1.12.1 in /javascript/npm/amigo2-instance-data

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#612 - Bump underscore from 1.8.3 to 1.12.1 in /javascript/npm/amigo2-instance-data

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#610 - Docker support

Issue - State: closed - Opened by nathanweeks over 3 years ago - 5 comments
Labels: question

#609 - Filters are not applied to searches even if they appear in the URL

Issue - State: closed - Opened by ValWood almost 4 years ago - 5 comments
Labels: bug (A: showstopper)

#608 - XSS vulnerability in reference

Issue - State: closed - Opened by kltm almost 4 years ago - 1 comment
Labels: bug (A: showstopper)

#607 - web visibility of GO xrefs list

Issue - State: open - Opened by zhilianghu almost 4 years ago - 9 comments

#607 - web visibility of GO xrefs list

Issue - State: open - Opened by zhilianghu almost 4 years ago - 9 comments

#606 - XSS vulnerability in browse

Issue - State: closed - Opened by kltm about 4 years ago
Labels: bug (A: showstopper)

#606 - XSS vulnerability in browse

Issue - State: closed - Opened by kltm about 4 years ago
Labels: bug (A: showstopper)

#605 - WIP: Update grebe.yaml

Pull Request - State: open - Opened by kltm about 4 years ago

#604 - [quick] Add grebe template: compare two gene sets for two terms

Issue - State: open - Opened by cmungall about 4 years ago - 1 comment
Labels: bug (C: surface issue)

#603 - Matrix tool: please supply maximum number of allowed terms

Issue - State: open - Opened by ValWood about 4 years ago - 3 comments

#602 - DNA binding transcription factors. MAJOR ISSUE

Issue - State: open - Opened by ValWood over 4 years ago - 29 comments
Labels: bug (B: affects usability)

#601 - Can we reroute MGI:XXX to MGI:MGI:XXX

Issue - State: closed - Opened by lpalbou over 4 years ago - 2 comments
Labels: question

#600 - Some relations are only shown by their IDs

Issue - State: closed - Opened by pgaudet over 4 years ago - 2 comments
Labels: duplicate

#600 - Some relations are only shown by their IDs

Issue - State: closed - Opened by pgaudet over 4 years ago - 2 comments
Labels: duplicate

#599 - Removal of db-xrefs.yaml in amigo

Issue - State: open - Opened by lpalbou over 4 years ago - 15 comments
Labels: bug (B: affects usability)

#599 - Removal of db-xrefs.yaml in amigo

Issue - State: open - Opened by lpalbou over 4 years ago - 15 comments
Labels: bug (B: affects usability)

#598 - AmiGO stats page has no data

Issue - State: closed - Opened by hattrill over 4 years ago - 6 comments
Labels: bug (B: affects usability)

#598 - AmiGO stats page has no data

Issue - State: closed - Opened by hattrill over 4 years ago - 6 comments
Labels: bug (B: affects usability)

#597 - Bump jquery from 3.3.1 to 3.5.0 in /javascript/npm/bbop-widget-set

Pull Request - State: open - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#596 - Bump jquery from 3.3.1 to 3.5.0

Pull Request - State: open - Opened by dependabot[bot] over 4 years ago
Labels: dependencies

#595 - Bump minimist from 1.2.0 to 1.2.3

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#594 - Protein Ontology links are not resolving

Issue - State: closed - Opened by ukemi over 4 years ago - 3 comments
Labels: bug (B: affects usability)

#589 - Amigo broken?

Issue - State: closed - Opened by ValWood almost 5 years ago - 3 comments
Labels: question, revisit

#589 - Amigo broken?

Issue - State: closed - Opened by ValWood almost 5 years ago - 3 comments
Labels: question, revisit

#585 - In bookmarked searches with spaces, they are rendered as %20, preventing the search from running properly

Issue - State: closed - Opened by kltm almost 5 years ago - 10 comments
Labels: bug (B: affects usability)

#582 - In some cases, AmiGO-loaded ontologies seem sub-optimal

Issue - State: open - Opened by kltm about 5 years ago - 26 comments

#579 - Replace software page with link to GO Tools page

Issue - State: closed - Opened by pgaudet over 5 years ago - 12 comments
Labels: enhancement

#576 - XSS vulnerability in Gannet

Issue - State: closed - Opened by kltm over 5 years ago - 4 comments
Labels: bug (A: showstopper)

#576 - XSS vulnerability in Gannet

Issue - State: closed - Opened by kltm over 5 years ago - 4 comments
Labels: bug (A: showstopper)

#575 - XSS vulnerability in search filters

Issue - State: closed - Opened by kltm over 5 years ago - 2 comments
Labels: bug (A: showstopper)

#575 - XSS vulnerability in search filters

Issue - State: closed - Opened by kltm over 5 years ago - 2 comments
Labels: bug (A: showstopper)

#565 - "Data health" link needs to be replaced or removed

Issue - State: closed - Opened by pgaudet over 5 years ago - 9 comments
Labels: bug (C: surface issue)

#565 - "Data health" link needs to be replaced or removed

Issue - State: closed - Opened by pgaudet over 5 years ago - 9 comments
Labels: bug (C: surface issue)

#559 - Non-GO terms prioritized in general search

Issue - State: open - Opened by ValWood over 5 years ago - 18 comments
Labels: bug (B: affects usability)

#471 - Download should include gene symbol (bioentity_label) by default

Issue - State: open - Opened by krchristie almost 7 years ago - 2 comments
Labels: bug (C: surface issue)

#454 - Exlude obsolete terms from autocomplete

Issue - State: open - Opened by pgaudet about 7 years ago - 2 comments
Labels: bug (C: surface issue)

#452 - Allow search ordering, or have a sensible default search ordering on some fields

Issue - State: open - Opened by ValWood about 7 years ago - 5 comments
Labels: enhancement, revisit

#451 - Supress unneeded links for exotic / external terms on details pages

Issue - State: closed - Opened by kltm about 7 years ago - 1 comment
Labels: enhancement

#360 - User confusion in the neighborhood view; make note of indirect and direct relations

Issue - State: open - Opened by ValWood over 8 years ago - 20 comments
Labels: bug (C: surface issue)

#237 - Add a 'models' tab onto term and entity pages

Issue - State: closed - Opened by cmungall over 9 years ago - 4 comments
Labels: enhancement

#174 - If a class is not found, make a termgenie API call to see if it's in the queue

Issue - State: closed - Opened by cmungall almost 10 years ago - 2 comments
Labels: enhancement

#144 - Reimplement slimmer functionality

Issue - State: open - Opened by kltm over 10 years ago - 15 comments
Labels: enhancement

#120 - Allow search for internal identifiers (was: "Cannot search for dictyBase gene IDs")

Issue - State: open - Opened by pfey03 over 10 years ago - 7 comments
Labels: enhancement

#58 - Standardize json payload for Class information

Issue - State: closed - Opened by cmungall about 11 years ago - 6 comments

#56 - Add taxon constraints to display

Issue - State: closed - Opened by kltm about 11 years ago - 29 comments
Labels: enhancement