Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / cov-lineages/pango-designation issues and pull requests
#2785 - KS.1.1+Orf1a:A470T+S:R190S (26 seqs, 6 places, >50% Uzbekistan)
Issue -
State: open - Opened by aviczhl2 6 days ago
#2784 - New KP.3.2 + S:S31del emerged recently (35, 7 places, first sampled in India)
Issue -
State: open - Opened by FedeGueli 6 days ago
#2783 - KP.2.3/KP.3.3 recombinant (22 seqs, 4 places in USA, 15 with S:R346T)
Issue -
State: open - Opened by aviczhl2 7 days ago
#2782 - KP.3.1.1+S:A575S(39 seqs, >10 places, 6 with S:R346T)
Issue -
State: open - Opened by aviczhl2 7 days ago
#2781 - MC.10+S:A435S,Orf9b:R47H (37 seqs, >10 places)
Issue -
State: open - Opened by aviczhl2 7 days ago
#2780 - KP.2.3 subbranch with Orf3d-2:K6* (158 sequences, 9 or 10 countries, mainly in US-TX)
Issue -
State: open - Opened by Over-There-Is 12 days ago
- 3 comments
#2779 - KP.2.3+S:S31del+S:K478T(rev)+Orf8:S67F,S:R190S (10 seqs, 7 countries)
Issue -
State: open - Opened by aviczhl2 13 days ago
- 1 comment
#2778 - KP.3.1.1+S:N1187H( 45 seqs, 11 countries)
Issue -
State: open - Opened by aviczhl2 13 days ago
#2776 - KP.1.1.1 became DeFLiRT starting with N:S183P (32 samples US, Canada,France and China)
Issue -
State: open - Opened by FedeGueli 16 days ago
#2775 - KP.3.1 subbranch with S:N185D and Orf1a:V3917I (108, 7 countries, Mainly in US)
Issue -
State: open - Opened by Over-There-Is 17 days ago
- 2 comments
#2774 - KP.2.3/XEC Recombinant(44 seqs, 12 countries)
Issue -
State: open - Opened by Fearuncle 17 days ago
- 26 comments
#2773 - KP.2.8 with S:255-257 deletions (34 seqs, 12 countries)
Issue -
State: open - Opened by NkRMnZr 19 days ago
- 1 comment
#2771 - KP.3.3+Orf1b:A1603S+Orf10 frameshift, S:F59S(52 seqs, 6 countries)
Issue -
State: open - Opened by aviczhl2 21 days ago
- 5 comments
#2770 - KP.2 Plus S:I934V and S:N30K emerged in China (40 , 9 countries)
Issue -
State: open - Opened by FedeGueli 22 days ago
- 4 comments
#2769 - LB.1 + S:K478T (rev) + S:E96V emerged in Nepal (11)
Issue -
State: closed - Opened by FedeGueli 22 days ago
- 2 comments
#2768 - Second branch of XEC with Orf1a:I1367L (98, 17 countries)
Issue -
State: open - Opened by FedeGueli 22 days ago
- 7 comments
#2766 - LB.1.7+S:R190S with C22096T branch (14 seqs, 3 countries)
Issue -
State: closed - Opened by DailyCovidCases 23 days ago
- 4 comments
#2765 - KP.2.3+S:A1174V (118 seqs, 16 countries) 13% in Brazil
Issue -
State: open - Opened by aviczhl2 23 days ago
- 2 comments
#2764 - KP.3.2+S:S31P widespread in China(19 seqs, 6 countries)
Issue -
State: open - Opened by aviczhl2 24 days ago
- 5 comments
#2763 - Usher placement shift of MC.1
Issue -
State: closed - Opened by aviczhl2 25 days ago
- 1 comment
#2762 - Proposal to include MU.1 without C26735T.
Issue -
State: open - Opened by aviczhl2 26 days ago
- 3 comments
#2759 - KP.4.2+Orf1a:Q575R+S:S256L+S:S31del(24 seqs, 9 countries, 18 with S:R190S)
Issue -
State: open - Opened by aviczhl2 29 days ago
- 4 comments
#2758 - JN.1.67.1 subbranch with S:F59S, R346T on G1126A branch (42, 8 regions, mainly found in CN-LN)
Issue -
State: open - Opened by Over-There-Is 30 days ago
- 4 comments
#2757 - JN.1.4.5+S:F456L with C28948T branch (29 seqs)
Issue -
State: closed - Opened by DailyCovidCases about 1 month ago
- 4 comments
#2751 - KS.1.1/JN.1* recombinant (170 seqs, 19 countries, 9% South Korea)
Issue -
State: open - Opened by aviczhl2 about 1 month ago
- 17 comments
#2750 - KP.1.1.5+Orf1a:A2785V,A4357V+S:S680Y(69 seqs, 10 countries)
Issue -
State: open - Opened by aviczhl2 about 1 month ago
- 4 comments
#2748 - KP.2.2 + S:T22N (133, 17 countries likely emerged in Nepal)
Issue -
State: open - Opened by FedeGueli about 1 month ago
- 11 comments
#2747 - KP.1.1+S:S71Y,S31del or JN.1.11.1/LP.2 recombinant(52 seqs, 13 countries)
Issue -
State: open - Opened by aviczhl2 about 1 month ago
- 10 comments
#2746 - LB.1+S:R190S (39 seqs, 12 countries)
Issue -
State: open - Opened by aviczhl2 about 1 month ago
- 2 comments
#2745 - JN.1+S:F456L+Orf1a:Y1734H,S:S60P starting and still circulating in Vietnam(48 seqs, 10 countries with two S:T572I branches 9 and 6 seqs )
Issue -
State: open - Opened by aviczhl2 about 1 month ago
- 8 comments
#2744 - KP.3.3 + S:I844V has spread globally from Australia ( 215 Samples, 14 countries)
Issue -
State: open - Opened by FedeGueli about 1 month ago
- 4 comments
#2743 - KP.3.1 subbranch with S:N>K679R(163 seqs, 18 regions, mainly in Spain) and further S:L176F(31, 8 regions)
Issue -
State: open - Opened by Over-There-Is about 1 month ago
- 5 comments
#2740 - KP.2.5+Orf1a:N704K, S:S31del (59 seqs, 12 countries, 14 with S:A688V, 4 with S:T22N)
Issue -
State: open - Opened by aviczhl2 about 1 month ago
- 8 comments
#2738 - JN.1.4+S:S31del,Orf8:E106Q+S:R346T(76 seqs, 6 countries)
Issue -
State: open - Opened by aviczhl2 about 1 month ago
- 6 comments
#2736 - KP.2+Orf1a:P1803L, S:K558N, S:F32del(53 seqs, 13 countries)
Issue -
State: open - Opened by aviczhl2 about 1 month ago
- 2 comments
#2732 - KP.2.3 + S:S31del branch with N:H145Y + S:K679R + ORF1a:T2016K (220 in 9 countries) + Branch with S:G184S (13) and a Branch with ORF1a:S944L + S:E1202G (23)
Issue -
State: open - Opened by Fearuncle about 2 months ago
- 9 comments
#2731 - KP.2/KP.3.2.3 recombinant. most have additional S:S31F (42 seqs, 11 countries)
Issue -
State: open - Opened by aviczhl2 about 2 months ago
- 3 comments
#2730 - KP.2.6+S:L441F(82 seqs, 10 countries)
Issue -
State: open - Opened by aviczhl2 about 2 months ago
- 2 comments
#2729 - KP.3.1.1+S:R346T (120 seqs, 17 countries, 4 with Orf9b:I5T)
Issue -
State: open - Opened by aviczhl2 about 2 months ago
- 13 comments
#2728 - KP.3.3+Orf9b:V37G(114 seqs, 9 countries)
Issue -
State: open - Opened by aviczhl2 about 2 months ago
- 2 comments
#2727 - Suggestion to alter KP.3.1.3 designation to only the G25644T branch
Issue -
State: open - Opened by aviczhl2 about 2 months ago
- 5 comments
#2722 - KP.2.3(no 31del)+S:T572I(242 seqs, 17 countries )
Issue -
State: open - Opened by aviczhl2 about 2 months ago
- 7 comments
#2718 - KP.2.2+S:T572I (52 seqs) and its sublineage with S:K182R,S:A846V (36 seqs)
Issue -
State: open - Opened by DailyCovidCases about 2 months ago
- 16 comments
#2715 - KP.2+S:F32del (95 seqs, 10 countries, 27% Ecuador, 9 with S:I101T)
Issue -
State: open - Opened by aviczhl2 about 2 months ago
- 10 comments
#2713 - LB.1.7+S:R190S(61 seqs, 5 countries)
Issue -
State: open - Opened by aviczhl2 about 2 months ago
- 7 comments
#2705 - JN.1+S:T22N,F456L,Q493E(Designated JN.1.16.5)+S:S31P( 54 seqs, 5 countries, 7 with S:T1273I)
Issue -
State: open - Opened by aviczhl2 2 months ago
- 18 comments
#2698 - KP.2+S:H146Y misread on GISAID (170 seqs, 14 countries)
Issue -
State: open - Opened by aviczhl2 2 months ago
- 7 comments
#2697 - LF.3.1 sub-branch with S:D745A ( 91 seqs, 13 countries, 4 of them in South America)
Issue -
State: open - Opened by FedeGueli 2 months ago
- 9 comments
#2694 - KP.3.1.1 + ORF1a:T2274I (439 seq.) >20% of cases in Iceland after June 15
Issue -
State: open - Opened by Fearuncle 2 months ago
- 2 comments
#2687 - KP.2.2+Orf9b:N62S(579 seqs, 26 countries, 9 with S:T572I)
Issue -
State: open - Opened by aviczhl2 3 months ago
- 13 comments
#2681 - KR.1 (FLiRT) got S:F59S (101, 10 countries including Philippines and Japan) with a branch with S:A435S,S:S680P (11, South Korea,US)
Issue -
State: open - Opened by FedeGueli 3 months ago
- 5 comments
#2661 - New JN.1.16.1 plus S:S31del after Orf1b:Q215K (C14110A) (117 samples, 7 countries including Mexico)
Issue -
State: open - Opened by FedeGueli 3 months ago
- 12 comments
#2650 - JN.1+S:Q677L+S:F456L with C14676T branch (67 seqs)
Issue -
State: closed - Opened by DailyCovidCases 4 months ago
- 11 comments
#2649 - KP.1.1+Orf1b:L2213F+S:N185del, F186I(323 seqs, 33 countries)
Issue -
State: open - Opened by aviczhl2 4 months ago
- 14 comments
#2631 - Lineage note distinctive mutation for JN.1.56 is incorrect.
Issue -
State: closed - Opened by alurqu 4 months ago
- 3 comments
#2621 - JN.1 + S:F456L with Orf3a:A54S (32 seqs) of which 27 seqs has S:G213E (T22200A)
Issue -
State: closed - Opened by DailyCovidCases 4 months ago
- 7 comments
#2613 - JN.1+S:F456L with Orf10:P10S (107 seqs)
Issue -
State: closed - Opened by DailyCovidCases 4 months ago
- 17 comments
#2607 - JN.1.4.5 + S:F456L with C28201T branch (96 seqs)
Issue -
State: closed - Opened by DailyCovidCases 4 months ago
- 6 comments
#2602 - JN.1.4 with Orf1a:D4117N, S:T22N and S:R346T (54 seqs)
Issue -
State: closed - Opened by DailyCovidCases 4 months ago
- 4 comments
#2601 - JN.1.4.5 + S:R346T that further gained S:T732I (77 seqs)
Issue -
State: closed - Opened by DailyCovidCases 4 months ago
- 4 comments
#2600 - JN.1+S:R346T on C2395T branch (35 seqs, 4 countries)
Issue -
State: closed - Opened by DailyCovidCases 4 months ago
- 2 comments
#2589 - Another JN.1 + FLiRT lineage emerged in the Iberian Peninsula (Now LF.6) with a S:Q493E branch (2, Spain)
Issue -
State: closed - Opened by FedeGueli 5 months ago
- 36 comments
#2542 - JN.1.11 (S:V1104L) got S:R346T being caught multiple times in GBW samples (119) and further gaining S:F59L (17)
Issue -
State: closed - Opened by FedeGueli 6 months ago
- 8 comments
#2525 - JN.1.8.1+S:H146Q(285 seqs, 8 countries)
Issue -
State: closed - Opened by aviczhl2 7 months ago
- 9 comments
#2453 - HK.3.2 sublineage with S:L216F, S:E554K(42 sequences, 12 countries)
Issue -
State: open - Opened by Over-There-Is 9 months ago
- 4 comments
#2431 - HK.3.2 sublineage with S:E471Q(40 sequences, 13 countries)
Issue -
State: open - Opened by Over-There-Is 9 months ago
- 3 comments
#2421 - HK.3.2 sublineage with S:A352S(40 sequences, 8 countries, mainly in Scandinavia)
Issue -
State: open - Opened by Over-There-Is 9 months ago
- 1 comment
#2369 - HK.3.2 sublineage with S:R214H(117 sequences, 16 countries), most with S:I1221T(87)
Issue -
State: open - Opened by Over-There-Is 11 months ago
- 12 comments
#1219 - CB.1 (BA.2.75.9.1) diversity issue
Issue -
State: open - Opened by corneliusroemer almost 2 years ago
- 3 comments
#100 - Would you add sequences' accession ID information to the lineages.metadata.csv?
Issue -
State: closed - Opened by gotao2 over 3 years ago
- 2 comments
Labels: comment
#99 - Most B.6.7 representatives have A24389C and G24390C, associated with untrimmed nanopore adapter seq
Issue -
State: closed - Opened by AngieHinrichs over 3 years ago
- 2 comments
Labels: correction
#98 - more representative sequences for B.1.617.1, B.1.617.2, B.1.617.3
Pull Request -
State: closed - Opened by AngieHinrichs over 3 years ago
#97 - Remove a duplicated line & three conflicts from lineages.csv
Pull Request -
State: closed - Opened by AngieHinrichs over 3 years ago
#96 - Emilia Romagna Lineage
Issue -
State: closed - Opened by gdirani over 3 years ago
- 1 comment
Labels: not accepted
#95 - B.1.617.2 sublineage with K417N
Issue -
State: closed - Opened by rambaut over 3 years ago
- 6 comments
Labels: designated
#94 - Potential new B.1.400 lineage with E484K in USA/UT
Issue -
State: closed - Opened by erinyoung over 3 years ago
- 5 comments
Labels: designated
#93 - Proposal of B.1 sublineage with Spike substitutions N440K and E484K and 69/70 deletions, among others
Issue -
State: closed - Opened by ha-ruiz75 over 3 years ago
- 5 comments
Labels: designated
#92 - New lineage proposal Sub-lineage of: B.1.1.7 that is exclusive to USA, with spike protein D178H and membrane protein V70L mutations
Issue -
State: closed - Opened by ShenLishuang over 3 years ago
- 3 comments
Labels: designated
#91 - New lineage proposal of SARS-CoV-2 strains having D614G, P681H and V1230L mutations in S glycoprotein
Issue -
State: closed - Opened by 08011990 over 3 years ago
- 6 comments
Labels: designated
#90 - New sub-lineage of C.36 with S:L452R
Issue -
State: closed - Opened by jcbarret over 3 years ago
- 2 comments
Labels: proposed
#89 - new B.1.525 sequences
Pull Request -
State: closed - Opened by AngieHinrichs over 3 years ago
- 1 comment
#88 - New B.1.617.2 sequences
Pull Request -
State: closed - Opened by AngieHinrichs over 3 years ago
#87 - alias_key.json with withdrawn lineages
Issue -
State: closed - Opened by danielmoney over 3 years ago
- 2 comments
#86 - New "P.n" lineage in Brazil with mutations E484Q and N501T
Issue -
State: closed - Opened by aplamarca over 3 years ago
- 1 comment
Labels: designated
#85 - Proposal of two new lineages from B.1.1 that seem to rapidly increase in frequency in Russia
Issue -
State: closed - Opened by GalkaKlink over 3 years ago
- 4 comments
Labels: designated
#84 - My data was not classified correctly
Issue -
State: closed - Opened by afmarti over 3 years ago
- 1 comment
#83 - (apparent) B.1.617.2 sequences assigned as B.1.153
Issue -
State: closed - Opened by jcbarret over 3 years ago
- 2 comments
Labels: correction
#82 - B.1.608 representatives have A24389C and G24390C, associated with untrimmed nanopore adapter seq
Issue -
State: closed - Opened by AngieHinrichs over 3 years ago
- 1 comment
#81 - B.1.553 representatives: ambiguous bases / AD.2; withdraw?
Issue -
State: closed - Opened by AngieHinrichs over 3 years ago
- 1 comment
Labels: correction
#80 - new lineage: B.1.1.1 with key mutations 69/70del, L452R and S477N
Issue -
State: closed - Opened by merijnvanhee over 3 years ago
- 9 comments
Labels: designated
#79 - A New Potential lineage (T.1) specifically located in Campania, Italy, is spreading exponentially.
Issue -
State: closed - Opened by agrimaldi93 over 3 years ago
- 2 comments
Labels: designated
#78 - Request for lineage A.29 with several spike mutations shared with variants of concern (Y449H, N501Y, H655Y)
Issue -
State: closed - Opened by SVN-PhD over 3 years ago
- 2 comments
Labels: designated
#77 - New SARS-CoV-2 P.1-related lineages proposal - P.1-like-I and P.1-like-II in Brazil
Issue -
State: closed - Opened by paolacristinaresende over 3 years ago
- 6 comments
Labels: designated
#76 - Found 8 pairs of duplicated lines; removed one instance of each.
Pull Request -
State: closed - Opened by AngieHinrichs over 3 years ago
#75 - Name updates: USA/CT-JAX[0-9]+ --> USA/CT-JAX-JAX[0-9]+.
Pull Request -
State: closed - Opened by AngieHinrichs over 3 years ago
#74 - Updating 400 names changed in GISAID Feb-May 2021.
Pull Request -
State: closed - Opened by AngieHinrichs over 3 years ago
- 1 comment
#73 - Request for B.1.1.482 Sub-lineage
Issue -
State: closed - Opened by mattdmem over 3 years ago
- 6 comments
Labels: designated
#72 - Fixing 10 sequence names that had an extra '/Brazil' between isolate and year.
Pull Request -
State: closed - Opened by AngieHinrichs over 3 years ago
#71 - Typo fixes: 11 names had '/' instead of '_'.
Pull Request -
State: closed - Opened by AngieHinrichs over 3 years ago
- 1 comment
#70 - Wrongly assignment of samples to lineage B.1.177, while they should be classified (at least) as B.1.525.
Issue -
State: closed - Opened by gabbo89 over 3 years ago
- 1 comment
Labels: correction