Ecosyste.ms: Issues

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GitHub / citiususc/sparkbwa issues and pull requests

#61 - mvn.128.no/maven2 unreachable

Issue - State: closed - Opened by iagooteroc about 3 years ago - 1 comment

#58 - Error while running master as local

Issue - State: open - Opened by dikshachaudhary over 5 years ago

#57 - --master local[n] results in an error

Issue - State: open - Opened by pdagosto about 7 years ago - 1 comment

#56 - Updated spark-submit command

Pull Request - State: open - Opened by Maryom about 7 years ago

#55 - Can't run SparkBWA on Amazon EMR Yarn cluster

Issue - State: open - Opened by Maryom about 7 years ago - 1 comment

#54 - jni_md.h file is not found

Issue - State: closed - Opened by Maryom about 7 years ago - 4 comments

#53 - Missing an output location for shuffle 0

Issue - State: closed - Opened by Shenglai about 7 years ago - 1 comment

#51 - Output is empty .sam file!!

Issue - State: closed - Opened by Rokshan2016 over 7 years ago - 1 comment

#49 - ERROR: java.lang.ClassNotFoundException: com.github.sparkbwa.FASTQRecordGrouper

Issue - State: closed - Opened by avapirev over 7 years ago - 10 comments

#48 - Single-end reads crash

Issue - State: closed - Opened by avapirev over 7 years ago - 4 comments

#44 - SparkBWA generates empty sam files

Issue - State: closed - Opened by salimbakker almost 8 years ago - 8 comments

#43 - Error when using Azure blob storage paths for FASTQ files and SAM output file

Issue - State: closed - Opened by ghost almost 8 years ago - 1 comment

#42 - Index file cannot be located

Issue - State: closed - Opened by avapirev almost 8 years ago - 1 comment

#41 - Unable to build with Maven

Issue - State: closed - Opened by luederm almost 8 years ago - 2 comments

#40 - mvn package compilation failing with certificate error

Issue - State: closed - Opened by tushu1232 almost 8 years ago - 3 comments

#39 - Fix JNI interface Makefile to compile on MacOS

Pull Request - State: closed - Opened by ramyala almost 8 years ago - 1 comment

#38 - Collective sam file not present in the output directory.

Issue - State: closed - Opened by tushu1232 almost 8 years ago - 9 comments

#37 - fix empty sam files

Pull Request - State: closed - Opened by xubo245 about 8 years ago

#36 - Help needed to run SparkBWA without Hadoop

Issue - State: closed - Opened by avapirev about 8 years ago - 3 comments

#35 - ERROR YarnScheduler: Lost executor 5 on Mcnode6: remote Rpc client disassociated

Issue - State: closed - Opened by xubo245 about 8 years ago - 15 comments

#34 - Build fails due to certificate problems in Maven package

Issue - State: closed - Opened by avapirev about 8 years ago - 6 comments

#33 - Update pom.xml

Pull Request - State: closed - Opened by pmoret about 8 years ago - 1 comment

#32 - about processing SparkBWA warning

Issue - State: closed - Opened by light940929 over 8 years ago - 7 comments

#31 - Reducer functionality working again

Pull Request - State: closed - Opened by jmabuin over 8 years ago

#30 - Modified options

Pull Request - State: closed - Opened by jmabuin over 8 years ago

#29 - Some modifications and bug fixes

Pull Request - State: closed - Opened by jmabuin over 8 years ago

#28 - spark2.0?

Issue - State: closed - Opened by cariaso over 8 years ago - 1 comment

#27 - -bwaArgs option seems not working

Issue - State: closed - Opened by jmoa over 8 years ago - 1 comment

#26 - Simplify packaging and simplify the function used to read FASTQ files

Pull Request - State: closed - Opened by paalka over 8 years ago - 1 comment

#25 - Docker setup

Issue - State: closed - Opened by mgijsbertihodenpijl over 8 years ago - 1 comment

#24 - compile with UTF8

Pull Request - State: closed - Opened by mgijsbertihodenpijl over 8 years ago - 1 comment

#23 - Build fails on linking libbwa (Mac OS X)

Issue - State: closed - Opened by mgijsbertihodenpijl over 8 years ago - 3 comments

#22 - SparkBWA generates empty sam files

Issue - State: closed - Opened by Asmaa-Ali over 8 years ago - 17 comments

#18 - Any pair of fq files can do to test it

Issue - State: closed - Opened by luobailian over 8 years ago - 1 comment

#17 - The version ?

Issue - State: closed - Opened by wangzhenkeep over 8 years ago - 1 comment

#16 - ERROR LiveListenerBus: Listener EventLoggingListener threw an exception

Issue - State: closed - Opened by wangzhenkeep over 8 years ago - 1 comment

#15 - Need advise run to SparkBWA with Big data set of HG

Issue - State: closed - Opened by Nav15 over 8 years ago - 1 comment

#14 - Problem running SparkBWA

Issue - State: closed - Opened by Asmaa-Ali over 8 years ago - 2 comments

#13 - yarn-cluster mode actually taking a singl node and core

Issue - State: closed - Opened by Nav15 over 8 years ago - 5 comments

#12 - Add support for single-reads for all algorithms

Pull Request - State: closed - Opened by paalka over 8 years ago - 3 comments

#11 - Running with master mode error：File does not exist

Issue - State: closed - Opened by xubo245 over 8 years ago - 1 comment

#10 - Running with local mode

Pull Request - State: closed - Opened by xubo245 over 8 years ago - 1 comment

#9 - settle error

Pull Request - State: closed - Opened by xubo245 over 8 years ago - 1 comment

#8 - Error SparkBWA

Issue - State: closed - Opened by Nav15 over 8 years ago - 1 comment

#7 - run with single-end error

Issue - State: closed - Opened by xubo245 over 8 years ago - 6 comments

#6 - Cannot start SparkBWA

Issue - State: closed - Opened by xubo245 over 8 years ago - 29 comments

#5 - Error during execution

Issue - State: closed - Opened by Nav15 over 8 years ago - 13 comments

#4 - Problem in running MEM with Sparkbwa

Issue - State: closed - Opened by neozhang307 over 8 years ago - 6 comments

#2 - Closed

Issue - State: closed - Opened by Nav15 over 8 years ago

#1 - Data has moved

Pull Request - State: closed - Opened by xubo245 over 8 years ago