Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ccb-hms/ontology-mapper issues and pull requests

#63 - Update README.md

Pull Request - State: closed - Opened by rsgoncalves 6 months ago

#62 - Add BioPortal API key parameter + Minor fixes (closes #61)

Pull Request - State: closed - Opened by rsgoncalves 7 months ago

#61 - Mapping Key Error when all word results below the min_score

Issue - State: closed - Opened by KennyWu 7 months ago - 1 comment
Labels: bug

#60 - Merge PRs

Pull Request - State: closed - Opened by rsgoncalves 7 months ago

#59 - Update README.md

Pull Request - State: closed - Opened by rsgoncalves 7 months ago

#58 - Updated dependencies

Pull Request - State: closed - Opened by rsgoncalves 7 months ago

#57 - Add DOI to README.md

Pull Request - State: closed - Opened by rsgoncalves 7 months ago

#56 - Update to newer pandas version

Issue - State: closed - Opened by nleguillarme 7 months ago - 1 comment
Labels: enhancement

#55 - Update dev branch with task5-workflow

Pull Request - State: closed - Opened by rsgoncalves 8 months ago

#54 - Update README

Pull Request - State: closed - Opened by rsgoncalves 8 months ago

#53 - Remove collapsible headers from README

Pull Request - State: closed - Opened by rsgoncalves 8 months ago

#52 - Updated README

Pull Request - State: closed - Opened by rsgoncalves 8 months ago

#51 - Bump version

Pull Request - State: closed - Opened by rsgoncalves 8 months ago

#50 - Minor improvements and bug fixes

Pull Request - State: closed - Opened by rsgoncalves 8 months ago

#49 - Possible float value in EFO

Issue - State: closed - Opened by masarunakajima 9 months ago - 3 comments
Labels: bug

#48 - Fixing testing

Pull Request - State: closed - Opened by paynejason 11 months ago

#47 - Development

Pull Request - State: closed - Opened by paynejason 11 months ago

#46 - Optimize filter_mappings()

Pull Request - State: closed - Opened by paynejason 11 months ago

#45 - `t2t._filter_mappings()` function to obtain top-X mappings should be optimized

Issue - State: closed - Opened by rsgoncalves 12 months ago - 1 comment
Labels: bug

#44 - Fixes bugs with adding tags

Pull Request - State: closed - Opened by paynejason about 1 year ago

#43 - document similarity scores?

Issue - State: closed - Opened by vjcitn about 1 year ago - 1 comment
Labels: documentation

#42 - Bug fixes and initial GitHub Actions

Pull Request - State: closed - Opened by paynejason over 1 year ago

#41 - repeated queries reload from cache

Issue - State: closed - Opened by vjcitn over 1 year ago - 3 comments
Labels: bug

#40 - Merge v4.0.0 Release Candidate changes to main

Pull Request - State: closed - Opened by rsgoncalves over 1 year ago

#39 - Update dependencies and command-line interface

Pull Request - State: closed - Opened by rsgoncalves over 1 year ago

#38 - Fixes None bug

Pull Request - State: closed - Opened by paynejason over 1 year ago

#37 - Add version update

Pull Request - State: closed - Opened by paynejason over 1 year ago

#36 - Remove extra functions and add unmapped

Pull Request - State: closed - Opened by paynejason over 1 year ago

#35 - Fixes Min Score Bug

Pull Request - State: closed - Opened by paynejason over 1 year ago

#34 - Fix Cache Ontology Set Bug

Pull Request - State: closed - Opened by paynejason over 1 year ago

#33 - Ontology Acronyms and Cache Reorganization

Pull Request - State: closed - Opened by paynejason almost 2 years ago

#32 - map_terms returns results with score < min_score

Issue - State: closed - Opened by nleguillarme almost 2 years ago - 2 comments
Labels: bug

#31 - Add Term Types

Pull Request - State: closed - Opened by paynejason almost 2 years ago

#30 - Missing file: unstruct_terms.txt

Issue - State: closed - Opened by simonmoedinger almost 2 years ago - 1 comment
Labels: bug, good first issue

#29 - Add support for properties

Issue - State: closed - Opened by nleguillarme almost 2 years ago - 5 comments
Labels: enhancement

#28 - Bug Fixes and Terminology Changes

Pull Request - State: closed - Opened by paynejason almost 2 years ago

#27 - Deeper integration with the Bioregistry

Issue - State: closed - Opened by cthoyt almost 2 years ago - 3 comments
Labels: enhancement

#26 - Source Term ID Bug Fixes

Pull Request - State: closed - Opened by paynejason almost 2 years ago

#25 - Instance Bug Fix

Pull Request - State: closed - Opened by paynejason almost 2 years ago

#24 - Add Tagging

Pull Request - State: closed - Opened by paynejason almost 2 years ago

#23 - Preprocessing Updates

Pull Request - State: closed - Opened by paynejason about 2 years ago

#21 - Integrates Preprocessing

Pull Request - State: closed - Opened by paynejason about 2 years ago

#20 - Bug Fixes in term_collector.py

Pull Request - State: closed - Opened by paynejason about 2 years ago

#19 - Development

Pull Request - State: closed - Opened by paynejason about 2 years ago

#18 - Ontology caching into dev

Pull Request - State: closed - Opened by paynejason about 2 years ago

#17 - Need to update from main

Pull Request - State: closed - Opened by paynejason over 2 years ago

#16 - Nlp

Pull Request - State: closed - Opened by paynejason over 2 years ago

#15 - Add support for scalable generation of BioBERT embeddings

Issue - State: closed - Opened by rsgoncalves over 2 years ago
Labels: enhancement, low priority

#14 - Add support to specify what mapping method should be used

Issue - State: closed - Opened by rsgoncalves over 2 years ago
Labels: enhancement

#13 - Add Testing Script

Pull Request - State: closed - Opened by nguyenank almost 3 years ago

#12 - Generate ontology term graphs for all terms

Issue - State: closed - Opened by rsgoncalves almost 3 years ago
Labels: bug

#11 - Add support to output provenance information (tool version, options, environment, etc)

Issue - State: closed - Opened by rsgoncalves almost 3 years ago - 1 comment
Labels: enhancement, good first issue, high priority

#10 - Add support to output mappings in SSSOM format

Issue - State: closed - Opened by rsgoncalves almost 3 years ago
Labels: enhancement, low priority

#9 - Allow input of custom API parameters to Zooma mapper

Issue - State: closed - Opened by rsgoncalves almost 3 years ago
Labels: enhancement, good first issue

#7 - Better handling of default parameter values

Issue - State: closed - Opened by rsgoncalves about 3 years ago
Labels: enhancement, good first issue

#6 - Add interface to map text using BioPortal Annotator

Issue - State: closed - Opened by rsgoncalves about 3 years ago
Labels: enhancement

#5 - Add interface to map text using Zooma

Issue - State: closed - Opened by rsgoncalves about 3 years ago
Labels: enhancement

#4 - Ontology term graph representation should not contain duplicate nodes or edges

Issue - State: closed - Opened by rsgoncalves about 3 years ago - 1 comment
Labels: bug

#2 - Add requirements file with library dependencies

Issue - State: closed - Opened by rsgoncalves about 3 years ago
Labels: enhancement

#1 - Add support to limit search based on a white-list of base IRIs

Issue - State: closed - Opened by rsgoncalves about 3 years ago
Labels: enhancement