cancerit/telomerecat issues and pull requests

#48 - Telomerecat misfunctions when tmp_dir is specified argument, not defaults

Issue - State: open - Opened by ndeimler99 23 days ago

#47 - Telomere length not as expected in healthy blood

Issue - State: open - Opened by Urja25 8 months ago

#46 - Different results with same file as input. Results not reliable.

Issue - State: open - Opened by spnlab over 1 year ago - 3 comments

#45 - Floating point error

Issue - State: open - Opened by jgmayer67 over 1 year ago

#44 - telomere length csv

Issue - State: closed - Opened by eliu98 over 1 year ago

#43 - telbam file failed to generate

Issue - State: closed - Opened by eliu98 over 1 year ago

#42 - Extremely low read counts and telomere length

Issue - State: open - Opened by sbrt over 2 years ago - 2 comments

#41 - Telomerecat showing error while running

Issue - State: open - Opened by Srij-98 over 2 years ago - 1 comment

#40 - Slow process

Issue - State: open - Opened by YiweiNiu over 2 years ago

#39 - Would telomerecat work with single cell DNA sequencing data?

Issue - State: closed - Opened by rodrigoduarte88 over 2 years ago - 2 comments

#38 - issue run TelomereCat

Issue - State: open - Opened by jpkoc almost 3 years ago

#37 - --Reference option for decoding cram not recognized

Issue - State: open - Opened by zlskidmore about 3 years ago - 3 comments

#36 - Change request: add docker run command to docs/readme

Issue - State: open - Opened by chrispyatt about 3 years ago

#35 - Telomere length is zero

Issue - State: closed - Opened by kacyng92 about 3 years ago - 7 comments

#34 - badge cleanup

Pull Request - State: closed - Opened by keiranmraine over 3 years ago

#33 - Hotfix/4.0.1

Pull Request - State: closed - Opened by keiranmraine over 3 years ago

#32 - Pysam collate error

Issue - State: closed - Opened by cwine over 3 years ago - 3 comments
Labels: documentation

#31 - StopIteration - pysam_collate/bam2telbam etc

Issue - State: open - Opened by keiranmraine over 3 years ago - 4 comments
Labels: documentation, enhancement

#30 - telbam.collate_pairs() - not used

Issue - State: open - Opened by keiranmraine over 3 years ago

#29 - setup.py asking for parabam release that doesn't exist

Issue - State: closed - Opened by chrispyatt over 3 years ago - 5 comments

#28 - Can't install latests Bug fix release 3.4.1

Issue - State: closed - Opened by talshakedhuji over 3 years ago - 1 comment

#27 - Docker container appears to be broken

Issue - State: closed - Opened by chrispyatt over 3 years ago - 1 comment

#26 - Telomere length estimation from WXS bam?

Issue - State: closed - Opened by tc86 over 3 years ago - 1 comment

#25 - Migrate from travis to CircleCI

Issue - State: closed - Opened by keiranmraine over 3 years ago - 1 comment

#24 - Feature/clean code

Pull Request - State: closed - Opened by keiranmraine over 3 years ago

#23 - Telomerecat hangs

Issue - State: closed - Opened by keiranmraine over 3 years ago - 3 comments

#22 - Error message in bam2telbam

Issue - State: closed - Opened by davidroberson almost 4 years ago - 1 comment

#21 - Does Telomerecat accepts CRAM file as input instead of BAM file?

Issue - State: closed - Opened by Ramanandan almost 4 years ago - 2 comments

#20 - Could not retrieve index file

Issue - State: closed - Opened by radwaraed about 4 years ago - 9 comments
Labels: enhancement

#19 - Usage Instructions Missing

Issue - State: closed - Opened by DarioS about 4 years ago - 2 comments
Labels: documentation

#18 - Tumour Tissue Sample Estimation and Purity

Issue - State: closed - Opened by DarioS about 4 years ago - 1 comment

#17 - Adam develop

Pull Request - State: open - Opened by adamcweiner about 4 years ago - 5 comments

#16 - unknown error

Issue - State: closed - Opened by kikinocka about 4 years ago - 1 comment

#15 - Parabam coming to abrupt halt

Issue - State: closed - Opened by dylanzhao1993 about 4 years ago - 1 comment

#14 - lots of lines showing "Could not retrieve index file for...."

Issue - State: closed - Opened by dylanzhao1993 over 4 years ago - 19 comments

#13 - user reported slow process

Issue - State: closed - Opened by byb121 over 4 years ago - 13 comments

#12 - unexpected error

Issue - State: closed - Opened by xtmgah over 4 years ago - 5 comments

#11 - Install cython and make tel_len an int for randint

Pull Request - State: closed - Opened by rpshep over 4 years ago

#10 - no obvious linkage to or from jhrf/telomerecat

Issue - State: closed - Opened by mcast over 4 years ago - 1 comment

#9 - Release/3.3.0

Pull Request - State: closed - Opened by byb121 almost 5 years ago

#8 - move doc from readthedocs.io to this repo

Issue - State: open - Opened by byb121 almost 5 years ago

#7 - license may need update

Issue - State: open - Opened by byb121 almost 5 years ago - 1 comment

#6 - all commands exits 0 even with non-exist options

Issue - State: closed - Opened by byb121 almost 5 years ago - 1 comment

#5 - command 'telomerecat' does not have option -v or -h

Issue - State: closed - Opened by byb121 almost 5 years ago - 1 comment

#4 - Feature/explore to py3

Pull Request - State: closed - Opened by byb121 almost 5 years ago - 1 comment

GitHub / cancerit/telomerecat issues and pull requests