callahantiff/OMOP2OBO issues and pull requests

#82 - OSError: [WinError 193] %1 is not a valid Win32 application when running owltools on Windows

Issue - State: open - Opened by shreema26 about 1 month ago - 3 comments
Labels: other

#81 - Bump urllib3 from 1.25.11 to 1.26.17 in /applications/N3C

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#80 - Bump scipy from 1.5.4 to 1.10.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#79 - Bump nltk from 3.6.5 to 3.6.6

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#78 - Bump urllib3 from 1.25.11 to 1.26.5 in /applications/N3C

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#77 - Applications

Pull Request - State: closed - Opened by callahantiff about 2 years ago - 1 comment
Labels: application

#76 - updating logo

Pull Request - State: closed - Opened by callahantiff about 2 years ago - 1 comment
Labels: enhancement, hacktoberfest-accepted

#75 - adding link to preprint

Pull Request - State: closed - Opened by callahantiff about 2 years ago - 1 comment
Labels: hacktoberfest-accepted

#74 - TODO - Pubs+Presentation Task: Deposit versions in Zenodo to get citable DOI

Issue - State: open - Opened by jmcmurry over 2 years ago - 1 comment
Labels: pubs+presentations

#73 - adding dashboard to README

Pull Request - State: closed - Opened by callahantiff over 2 years ago - 1 comment

#72 - Harmonise OMOP mappings with boomer or a boomer-like approach?

Issue - State: open - Opened by matentzn over 2 years ago - 1 comment

#71 - Bump lxml from 4.6.2 to 4.9.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#70 - Work-around for NLTK download issues

Issue - State: open - Opened by chrisroederucdenver over 2 years ago
Labels: coding

#69 - fix name of umls_cui_data on branch for no mrconso file

Pull Request - State: closed - Opened by chrisroederucdenver over 2 years ago

#68 - running without a mrconso file has an error‘

Issue - State: open - Opened by chrisroederucdenver over 2 years ago
Labels: bug

#67 - requirements.txt derived from setup.py

Pull Request - State: closed - Opened by chrisroederucdenver over 2 years ago

#66 - fix #65 no value for merge option does not issue error about multiple…

Pull Request - State: closed - Opened by chrisroederucdenver over 2 years ago - 3 comments

#65 - merge option fails with multiple

Issue - State: open - Opened by chrisroederucdenver over 2 years ago - 1 comment
Labels: bug

#64 - requirements.txt based on latest pip install of each (March 2022)

Pull Request - State: closed - Opened by chrisroederucdenver over 2 years ago - 1 comment

#63 - Coding: add requirements.txt

Issue - State: open - Opened by chrisroederucdenver over 2 years ago - 2 comments
Labels: coding

#62 - Coding: SSSOM Output

Issue - State: open - Opened by joeflack4 over 2 years ago - 11 comments
Labels: coding

#61 - Bump lxml from 4.6.2 to 4.6.5

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#60 - Preparing for First release

Pull Request - State: closed - Opened by callahantiff about 3 years ago - 1 comment
Labels: release v1.0

#59 - Bump nltk from 3.5 to 3.6.5

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#58 - Bump lxml from 4.6.2 to 4.6.3

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#57 - Move main.py into package and add vanity CLI

Pull Request - State: open - Opened by cthoyt almost 4 years ago - 4 comments

#56 - Add vanity CLI

Issue - State: open - Opened by cthoyt almost 4 years ago - 4 comments
Labels: enhancement, coding

#55 - Generate OMOP2OBO Mappings to OHDSI Cohort Definitions

Issue - State: open - Opened by callahantiff almost 4 years ago - 3 comments
Labels: enhancement, help wanted

#53 - Moving from Travis CI to GitHub Actions

Pull Request - State: closed - Opened by callahantiff almost 4 years ago - 2 comments
Labels: release v1.0

#52 - updating gitignore

Pull Request - State: closed - Opened by callahantiff almost 4 years ago

#51 - Mapping rdfization

Pull Request - State: open - Opened by callahantiff almost 4 years ago - 1 comment
Labels: release v1.0

#50 - Migrate from TravisCI to GitHub Actions

Issue - State: closed - Opened by callahantiff almost 4 years ago
Labels: project organization, release v1.0

#49 - Wiki: Broken links on V1.0 release page

Issue - State: closed - Opened by ablack3 almost 4 years ago - 1 comment
Labels: wiki

#48 - Create YouTube Demo

Issue - State: open - Opened by callahantiff almost 4 years ago
Labels: project organization, other

#47 - HELP: Error Analysis

Issue - State: closed - Opened by callahantiff about 4 years ago - 5 comments
Labels: help wanted

#46 - Extension: Extend mapping to take advantage of existing UMLS mappings in ontologies

Issue - State: open - Opened by callahantiff about 4 years ago
Labels: enhancement, mapping, other, release v2.0

#45 - Improve string delimiter detection in mapping pipline

Issue - State: open - Opened by callahantiff about 4 years ago - 1 comment
Labels: bug, release v2.0

#44 - Polishing v1.0.0

Pull Request - State: closed - Opened by callahantiff about 4 years ago
Labels: bug

#43 - Development

Pull Request - State: closed - Opened by callahantiff about 4 years ago
Labels: release v2.0

#42 - Coding: Parallelize tf-idf cosine similarity code

Issue - State: open - Opened by callahantiff about 4 years ago
Labels: coding, release v2.0

#41 - Coding: Leverage OMOP CDM Ancestor Hierarchy Levels

Issue - State: open - Opened by callahantiff about 4 years ago
Labels: coding, release v2.0

#40 - fixing similarity scoring

Pull Request - State: closed - Opened by callahantiff about 4 years ago
Labels: bug, hacktoberfest-accepted

#39 - Improving mapping parameters

Pull Request - State: closed - Opened by callahantiff about 4 years ago
Labels: mapping, hacktoberfest-accepted

#38 - Development

Pull Request - State: closed - Opened by callahantiff about 4 years ago
Labels: mapping, hacktoberfest-accepted

#37 - Development

Pull Request - State: closed - Opened by callahantiff about 4 years ago
Labels: coding, mapping

#36 - Coding: Parallelize mapping aggregation results

Issue - State: open - Opened by callahantiff about 4 years ago
Labels: coding, release v2.0

#35 - Coding: adding helper function to leverage OHDSIAnanke

Issue - State: closed - Opened by callahantiff about 4 years ago - 1 comment
Labels: coding

#34 - Coding: Add RDF-ization code to convert mappings to RDF

Issue - State: open - Opened by callahantiff about 4 years ago - 23 comments
Labels: coding

#33 - TODO - Mapping: Extend/incorporate V1.0 mapping feedback into v2.0 release

Issue - State: closed - Opened by callahantiff about 4 years ago
Labels: mapping

#32 - Add Jupyter Notebooks

Issue - State: closed - Opened by callahantiff about 4 years ago - 3 comments
Labels: other

#31 - Wiki: Re-organize wiki to support releases

Issue - State: closed - Opened by callahantiff about 4 years ago - 4 comments
Labels: wiki

#30 - TODO: Mapping Release Formatting

Issue - State: open - Opened by callahantiff over 4 years ago - 1 comment
Labels: other

#29 - Tfidf workflow

Pull Request - State: closed - Opened by callahantiff over 4 years ago

#28 - Development

Pull Request - State: closed - Opened by callahantiff over 4 years ago

#27 - SQL Verification - OMOP Coverage V2

Issue - State: closed - Opened by callahantiff over 4 years ago - 12 comments
Labels: help wanted, SQL Query

#26 - SQL Verification - OMOP Coverage V1

Issue - State: closed - Opened by callahantiff over 4 years ago - 11 comments
Labels: help wanted, SQL Query

#25 - SQL Verification (OMOP Concepts): Drug_Exposure Concepts

Issue - State: closed - Opened by callahantiff over 4 years ago - 10 comments
Labels: help wanted, SQL Query

#24 - SQL Verification (OMOP Concepts): Condition_Occurrence Concepts

Issue - State: closed - Opened by callahantiff over 4 years ago - 13 comments
Labels: help wanted, SQL Query

#23 - SQL Verification (OMOP Concepts): Measurement Concepts

Issue - State: closed - Opened by callahantiff over 4 years ago - 8 comments
Labels: help wanted, SQL Query

#22 - Project Meeting -- 05/28/2020 @ 14:30

Issue - State: closed - Opened by callahantiff over 4 years ago - 2 comments
Labels: mapping, meetings

#21 - Project Meeting -- 05/28/2020 @ 12:00

Issue - State: closed - Opened by callahantiff over 4 years ago - 2 comments
Labels: meetings, pubs+presentations

#20 - TODO - Project Organization: Create README for Mapping Directory

Issue - State: closed - Opened by callahantiff over 4 years ago - 1 comment
Labels: project organization

#19 - Coding: Creating Mapping Testing Pipeline

Issue - State: open - Opened by callahantiff almost 5 years ago - 2 comments
Labels: coding, release v2.0

#18 - TODO - Draft the OMOP2OBO Mapping Manuscript

Issue - State: open - Opened by callahantiff almost 5 years ago
Labels: pubs+presentations

#17 - added license

Pull Request - State: closed - Opened by callahantiff about 5 years ago

#16 - Development

Pull Request - State: closed - Opened by callahantiff about 5 years ago

#15 - TODO - Mapping: Procedure Annotations

Issue - State: closed - Opened by callahantiff over 5 years ago - 1 comment
Labels: mapping

#14 - Development

Pull Request - State: closed - Opened by callahantiff over 5 years ago

#13 - Wiki: Add detail about mappings to wiki

Issue - State: closed - Opened by callahantiff over 5 years ago - 1 comment
Labels: wiki

#12 - Development

Pull Request - State: closed - Opened by callahantiff over 5 years ago

#11 - Coding: Add tests

Issue - State: closed - Opened by callahantiff over 5 years ago - 1 comment
Labels: coding

#10 - TODO - Mapping: Verify condition code annotations

Issue - State: closed - Opened by callahantiff over 5 years ago - 1 comment
Labels: duplicate, mapping

#9 - TODO - Coding: OBO update Watcher

Issue - State: closed - Opened by callahantiff over 5 years ago - 2 comments
Labels: coding

#8 - TODO - Coding: Update medication mapping code

Issue - State: closed - Opened by callahantiff over 5 years ago - 1 comment
Labels: coding

#7 - TODO - Mapping: Finalize medication annotations

Issue - State: closed - Opened by callahantiff over 5 years ago - 2 comments
Labels: mapping

#6 - TODO - Mapping: Verify Lab test mapping

Issue - State: closed - Opened by callahantiff over 5 years ago - 2 comments
Labels: mapping

#5 - TODO - Coding: Link GitHubGist snippets to repo

Issue - State: closed - Opened by callahantiff over 5 years ago - 1 comment
Labels: coding

#4 - TODO - Coding: Condition annotation verification

Issue - State: closed - Opened by callahantiff over 5 years ago - 4 comments
Labels: coding, mapping

#3 - TODO - Project Organization: write wiki page

Issue - State: closed - Opened by callahantiff over 5 years ago - 1 comment
Labels: project organization

#2 - TODO - Project Organization: Write project README

Issue - State: closed - Opened by callahantiff over 5 years ago - 4 comments
Labels: project organization

#1 - Add survey res to loinc2 hpo

Pull Request - State: closed - Opened by callahantiff almost 6 years ago

GitHub / callahantiff/OMOP2OBO issues and pull requests