Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / broadinstitute/single_cell_portal issues and pull requests
#129 - Create README.md
Pull Request -
State: open - Opened by jlchang 4 months ago
- 1 comment
#128 - Bump numpy from 1.19.2 to 1.22.0
Pull Request -
State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#127 - R Markdown notebook to guide usage of seurat_scp_convenience.R (SCP-3784)
Pull Request -
State: closed - Opened by jlchang over 2 years ago
#126 - (SCP-3710) adding spatial example file
Pull Request -
State: closed - Opened by devonbush almost 3 years ago
#125 - SCP files -> Seurat object example code (SCP-3631)
Pull Request -
State: closed - Opened by jlchang almost 3 years ago
- 1 comment
#124 - download individual files using command line
Issue -
State: closed - Opened by hurleyLi almost 3 years ago
- 7 comments
#123 - Updating to scp-ingest-pipeline 1.11.0 (SCP-3414)
Pull Request -
State: closed - Opened by bistline about 3 years ago
- 1 comment
#122 - Update metadata labels per EFO changes for 10x protocols (SCP-3371)
Pull Request -
State: closed - Opened by eweitz about 3 years ago
#121 - Update "10X" to "10x" per EFO change (SCP-3290)
Pull Request -
State: closed - Opened by eweitz about 3 years ago
#120 - Remove files
Pull Request -
State: closed - Opened by knapii-developments over 3 years ago
#119 - Update images
Pull Request -
State: closed - Opened by knapii-developments over 3 years ago
- 1 comment
#118 - Uploading wiki pictures
Issue -
State: closed - Opened by knapii-developments over 3 years ago
- 1 comment
#117 - Entry with several datasets
Issue -
State: closed - Opened by Sara-Jager over 3 years ago
- 3 comments
#116 - added fade to image RHS
Pull Request -
State: closed - Opened by jlchang over 3 years ago
#115 - adding cropped image
Pull Request -
State: closed - Opened by jlchang over 3 years ago
#114 - add annotated image of mc_example for review
Pull Request -
State: closed - Opened by jlchang over 3 years ago
- 3 comments
#113 - update metadata convention compliant metadata example
Pull Request -
State: closed - Opened by jlchang over 3 years ago
#112 - increment for PyPI release (SCP-2840)
Pull Request -
State: closed - Opened by jlchang over 3 years ago
#111 - Add metadata-convention-compliant metadata file (SCP-2832)
Pull Request -
State: closed - Opened by jlchang over 3 years ago
- 2 comments
#110 - * SCP-2826 Remove sort script
Pull Request -
State: closed - Opened by knapii-developments over 3 years ago
- 1 comment
#109 - Prevent file overwrite by manage-study (SCP-2698)
Pull Request -
State: closed - Opened by jlchang almost 4 years ago
- 1 comment
#108 - Supply user-agent string with manage-study API requests (SCP-2415)
Pull Request -
State: closed - Opened by jlchang almost 4 years ago
- 1 comment
#107 - increment requirements.txt in parallel with PyPI release (SCP-2661)
Pull Request -
State: closed - Opened by jlchang almost 4 years ago
#106 - update manage-study to handle full_description (SCP-2661)
Pull Request -
State: closed - Opened by jlchang almost 4 years ago
- 1 comment
#105 - update README to contact SCP support via Zendesk (SCP-2643)
Pull Request -
State: closed - Opened by jlchang almost 4 years ago
#104 - Increment PyPI package version (SCP-2598)
Pull Request -
State: closed - Opened by jlchang almost 4 years ago
#103 - Waiting for remote file status forever
Issue -
State: closed - Opened by kvshams almost 4 years ago
- 2 comments
#102 - Publish single_cell_portal to PyPI (SCP-2414)
Pull Request -
State: closed - Opened by jlchang about 4 years ago
- 1 comment
Labels: security-risk: low
#101 - Remove /scripts/genomes and make_toy_data.py
Pull Request -
State: closed - Opened by eweitz about 4 years ago
Labels: security-risk: low
#100 - Add convenience scripts for writing SCP files from analysis objects (SCP-3784)
Pull Request -
State: closed - Opened by vkozareva about 4 years ago
#99 - Enable bigger, more realistic toy matrices (SCP-2464)
Pull Request -
State: closed - Opened by eweitz about 4 years ago
- 1 comment
Labels: security-risk: low
#98 - Data submission problem
Issue -
State: closed - Opened by yulongliu68 about 4 years ago
- 2 comments
#97 - Local metadata validation CLI
Pull Request -
State: closed - Opened by knapii-developments about 4 years ago
- 1 comment
#96 - Missing studies
Issue -
State: closed - Opened by liu-xingliang about 4 years ago
- 2 comments
#95 - Support functionality related to editing studies through Python CLI
Pull Request -
State: closed - Opened by vkozareva about 4 years ago
- 2 comments
#94 - Read Count Data
Issue -
State: closed - Opened by vschulz about 4 years ago
- 3 comments
#93 - More Intuitive Filters on Home Page
Issue -
State: closed - Opened by DarioS about 4 years ago
- 4 comments
#92 - [General Feedback] Google authentication timing
Issue -
State: closed - Opened by mshadbolt over 4 years ago
- 1 comment
#91 - can't access the dataset
Issue -
State: closed - Opened by jianguozhouzunyimedicaluniversity over 4 years ago
- 1 comment
#90 - Gene name association error when with the same spelling but different case
Issue -
State: closed - Opened by yulongliu68 over 4 years ago
- 5 comments
#89 - Reference for scRNA-Seq data on Single Cell Portal
Issue -
State: closed - Opened by mmadeira97 over 4 years ago
- 1 comment
#88 - Analysed expression data spreadsheet
Issue -
State: closed - Opened by Diana-star-code over 4 years ago
- 5 comments
#87 - Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors
Issue -
State: closed - Opened by Diana-star-code over 4 years ago
- 6 comments
#86 - Enable "staging" environment for public CLI (SCP-2025)
Pull Request -
State: closed - Opened by eweitz over 4 years ago
Labels: security-risk: low
#85 - Please consider compressing text files
Issue -
State: closed - Opened by slowkow over 4 years ago
- 3 comments
#84 - Add metadata convention flag to public CLI [SCP-1913]
Pull Request -
State: closed - Opened by eweitz over 4 years ago
Labels: security-risk: low
#83 - use validation wrapper function in manage_study.py
Pull Request -
State: closed - Opened by jlchang over 4 years ago
- 1 comment
Labels: security-risk: low
#82 - T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation resource not available
Issue -
State: closed - Opened by TomasBrabec over 4 years ago
- 2 comments
#81 - Report code coverage metrics (SCP-1809)
Pull Request -
State: closed - Opened by eweitz over 4 years ago
- 1 comment
#80 - Test CLI upload and parse of cluster file
Pull Request -
State: closed - Opened by eweitz over 4 years ago
Labels: security-risk: low
#79 - Validate metadata using convention
Pull Request -
State: closed - Opened by eweitz almost 5 years ago
Labels: security-risk: low
#78 - CLI `verbose` option, refined messaging
Pull Request -
State: closed - Opened by eweitz almost 5 years ago
- 2 comments
Labels: security-risk: low
#77 - Implement file parsing via public CLI
Pull Request -
State: closed - Opened by eweitz almost 5 years ago
Labels: security-risk: low
#76 - Fix nondeterministic test
Pull Request -
State: closed - Opened by eweitz almost 5 years ago
Labels: security-risk: low
#75 - Continuous integration
Pull Request -
State: closed - Opened by eweitz almost 5 years ago
- 1 comment
Labels: security-risk: low
#74 - Login
Issue -
State: closed - Opened by sjwalker223 almost 5 years ago
- 7 comments
#73 - No gene gene expression in the tSNE
Issue -
State: closed - Opened by kvshams almost 5 years ago
- 3 comments
#72 - How to handle mtx files in R
Issue -
State: closed - Opened by kvittingseerup almost 5 years ago
- 5 comments
#71 - Information shared when login in with google
Issue -
State: closed - Opened by kvittingseerup about 5 years ago
- 1 comment
#70 - Change user-facing reference from "coordinate" file to "cluster" file
Pull Request -
State: closed - Opened by jlchang about 5 years ago
- 1 comment
#69 - Refactor script to make toy data
Pull Request -
State: closed - Opened by eweitz about 5 years ago
#68 - dockerfile and WDL updates for inferCNV 0.99.7 in SCP
Pull Request -
State: closed - Opened by jlchang about 5 years ago
#67 - POC: Ingest loom into firestore and structure zarr into acceptable data format
Pull Request -
State: closed - Opened by knapii-developments about 5 years ago
#66 - Refine inferCNV workflow: HMM, threads, R 3.6, test data
Pull Request -
State: closed - Opened by eweitz about 5 years ago
- 1 comment
#65 - Difficulty in downloading data
Issue -
State: closed - Opened by Jaremedwards about 5 years ago
- 7 comments
#64 - Support study file upload via CLI and Python library
Pull Request -
State: closed - Opened by eweitz over 5 years ago
- 1 comment
#63 - What is daily quota?
Issue -
State: closed - Opened by zhanxw over 5 years ago
- 6 comments
#62 - Email sent to everyone when sharing a project
Issue -
State: closed - Opened by gaelcge over 5 years ago
- 1 comment
#61 - inferCNV beta
Pull Request -
State: closed - Opened by eweitz over 5 years ago
#60 - Add BSD3 license
Pull Request -
State: closed - Opened by eweitz over 5 years ago
#59 - studies missing from previous portal
Issue -
State: closed - Opened by sandrine-muller-research over 5 years ago
- 2 comments
#58 - Turn off todo args
Pull Request -
State: closed - Opened by TimothyTickle over 5 years ago
#57 - Upstream adapter script for inferCNV reference analysis
Pull Request -
State: closed - Opened by eweitz over 5 years ago
#56 - Human cell atlas data portal?
Issue -
State: closed - Opened by Bohdan-Khomtchouk over 5 years ago
- 4 comments
#55 - Support reference cell groups in matrix_to_ideogram_annots.py
Pull Request -
State: closed - Opened by eweitz over 5 years ago
#54 - Note needed Google Cloud SDK set-up
Pull Request -
State: closed - Opened by eweitz over 5 years ago
#53 - Remove shell prompts from commands
Pull Request -
State: closed - Opened by Alanocallaghan over 5 years ago
- 1 comment
#52 - Extracting study metadata
Issue -
State: closed - Opened by Alanocallaghan over 5 years ago
- 11 comments
#51 - Hyperlink DOI to preferred resolver
Pull Request -
State: closed - Opened by katrinleinweber over 5 years ago
- 1 comment
#50 - Python library and basic CLI for SCP REST API
Pull Request -
State: closed - Opened by eweitz over 5 years ago
#49 - Update inferCNV to v0.8.2
Pull Request -
State: closed - Opened by eweitz over 5 years ago
- 2 comments
#48 - Studies loading very slowly
Issue -
State: closed - Opened by gurmank over 5 years ago
- 8 comments
#47 - Cleaning up inferCNV dependencies
Pull Request -
State: closed - Opened by bistline over 5 years ago
#46 - Citation information
Issue -
State: closed - Opened by Bohdan-Khomtchouk over 5 years ago
- 3 comments
#45 - Adding infercnv-alpha dockerfile
Pull Request -
State: closed - Opened by bistline over 5 years ago
#44 - Pipeline for ideogram expression means
Pull Request -
State: closed - Opened by eweitz over 5 years ago
#43 - Cross comparison
Issue -
State: closed - Opened by gaelcge over 5 years ago
- 12 comments
#42 - Cannot open any studies
Issue -
State: closed - Opened by nkogan over 5 years ago
- 4 comments
#41 - Can not modify the study data
Issue -
State: closed - Opened by kvshams over 5 years ago
- 2 comments
#40 - Explore Tab Contents Never Load
Issue -
State: closed - Opened by DarioS over 5 years ago
- 13 comments
#39 - Remove migrated code
Pull Request -
State: closed - Opened by eweitz over 5 years ago
- 1 comment
#38 - Scatter Plot
Issue -
State: closed - Opened by DarioS over 5 years ago
- 5 comments
#37 - Parse genome assemblies for SCP species integration
Pull Request -
State: closed - Opened by eweitz almost 6 years ago
- 2 comments
#36 - Cannot add a study
Issue -
State: closed - Opened by slowkow almost 6 years ago
- 5 comments
#35 - REST API?
Issue -
State: closed - Opened by Bohdan-Khomtchouk almost 6 years ago
- 3 comments
#34 - Toy Data Generator Updates
Pull Request -
State: closed - Opened by YanayRosen almost 6 years ago
#33 - Uploaded Site Figures For Dot Plot
Pull Request -
State: closed - Opened by YanayRosen almost 6 years ago
#32 - adding requirements information for running python scripts
Pull Request -
State: closed - Opened by bistline almost 6 years ago
#31 - Fixed sorting headers and added directory support
Pull Request -
State: closed - Opened by YanayRosen almost 6 years ago
#30 - Sparse matrix sorting script
Pull Request -
State: closed - Opened by YanayRosen almost 6 years ago