Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / broadinstitute/single_cell_portal issues and pull requests

#129 - Create README.md

Pull Request - State: open - Opened by jlchang 4 months ago - 1 comment

#128 - Bump numpy from 1.19.2 to 1.22.0

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#126 - (SCP-3710) adding spatial example file

Pull Request - State: closed - Opened by devonbush almost 3 years ago

#125 - SCP files -> Seurat object example code (SCP-3631)

Pull Request - State: closed - Opened by jlchang almost 3 years ago - 1 comment

#124 - download individual files using command line

Issue - State: closed - Opened by hurleyLi almost 3 years ago - 7 comments

#123 - Updating to scp-ingest-pipeline 1.11.0 (SCP-3414)

Pull Request - State: closed - Opened by bistline about 3 years ago - 1 comment

#122 - Update metadata labels per EFO changes for 10x protocols (SCP-3371)

Pull Request - State: closed - Opened by eweitz about 3 years ago

#121 - Update "10X" to "10x" per EFO change (SCP-3290)

Pull Request - State: closed - Opened by eweitz about 3 years ago

#120 - Remove files

Pull Request - State: closed - Opened by knapii-developments over 3 years ago

#119 - Update images

Pull Request - State: closed - Opened by knapii-developments over 3 years ago - 1 comment

#118 - Uploading wiki pictures

Issue - State: closed - Opened by knapii-developments over 3 years ago - 1 comment

#117 - Entry with several datasets

Issue - State: closed - Opened by Sara-Jager over 3 years ago - 3 comments

#116 - added fade to image RHS

Pull Request - State: closed - Opened by jlchang over 3 years ago

#115 - adding cropped image

Pull Request - State: closed - Opened by jlchang over 3 years ago

#114 - add annotated image of mc_example for review

Pull Request - State: closed - Opened by jlchang over 3 years ago - 3 comments

#113 - update metadata convention compliant metadata example

Pull Request - State: closed - Opened by jlchang over 3 years ago

#112 - increment for PyPI release (SCP-2840)

Pull Request - State: closed - Opened by jlchang over 3 years ago

#111 - Add metadata-convention-compliant metadata file (SCP-2832)

Pull Request - State: closed - Opened by jlchang over 3 years ago - 2 comments

#110 - * SCP-2826 Remove sort script

Pull Request - State: closed - Opened by knapii-developments over 3 years ago - 1 comment

#109 - Prevent file overwrite by manage-study (SCP-2698)

Pull Request - State: closed - Opened by jlchang almost 4 years ago - 1 comment

#108 - Supply user-agent string with manage-study API requests (SCP-2415)

Pull Request - State: closed - Opened by jlchang almost 4 years ago - 1 comment

#107 - increment requirements.txt in parallel with PyPI release (SCP-2661)

Pull Request - State: closed - Opened by jlchang almost 4 years ago

#106 - update manage-study to handle full_description (SCP-2661)

Pull Request - State: closed - Opened by jlchang almost 4 years ago - 1 comment

#105 - update README to contact SCP support via Zendesk (SCP-2643)

Pull Request - State: closed - Opened by jlchang almost 4 years ago

#104 - Increment PyPI package version (SCP-2598)

Pull Request - State: closed - Opened by jlchang almost 4 years ago

#103 - Waiting for remote file status forever

Issue - State: closed - Opened by kvshams almost 4 years ago - 2 comments

#102 - Publish single_cell_portal to PyPI (SCP-2414)

Pull Request - State: closed - Opened by jlchang about 4 years ago - 1 comment
Labels: security-risk: low

#101 - Remove /scripts/genomes and make_toy_data.py

Pull Request - State: closed - Opened by eweitz about 4 years ago
Labels: security-risk: low

#99 - Enable bigger, more realistic toy matrices (SCP-2464)

Pull Request - State: closed - Opened by eweitz about 4 years ago - 1 comment
Labels: security-risk: low

#98 - Data submission problem

Issue - State: closed - Opened by yulongliu68 about 4 years ago - 2 comments

#97 - Local metadata validation CLI

Pull Request - State: closed - Opened by knapii-developments about 4 years ago - 1 comment

#96 - Missing studies

Issue - State: closed - Opened by liu-xingliang about 4 years ago - 2 comments

#95 - Support functionality related to editing studies through Python CLI

Pull Request - State: closed - Opened by vkozareva about 4 years ago - 2 comments

#94 - Read Count Data

Issue - State: closed - Opened by vschulz about 4 years ago - 3 comments

#93 - More Intuitive Filters on Home Page

Issue - State: closed - Opened by DarioS about 4 years ago - 4 comments

#92 - [General Feedback] Google authentication timing

Issue - State: closed - Opened by mshadbolt over 4 years ago - 1 comment

#91 - can't access the dataset

Issue - State: closed - Opened by jianguozhouzunyimedicaluniversity over 4 years ago - 1 comment

#90 - Gene name association error when with the same spelling but different case

Issue - State: closed - Opened by yulongliu68 over 4 years ago - 5 comments

#89 - Reference for scRNA-Seq data on Single Cell Portal

Issue - State: closed - Opened by mmadeira97 over 4 years ago - 1 comment

#88 - Analysed expression data spreadsheet

Issue - State: closed - Opened by Diana-star-code over 4 years ago - 5 comments

#86 - Enable "staging" environment for public CLI (SCP-2025)

Pull Request - State: closed - Opened by eweitz over 4 years ago
Labels: security-risk: low

#85 - Please consider compressing text files

Issue - State: closed - Opened by slowkow over 4 years ago - 3 comments

#84 - Add metadata convention flag to public CLI [SCP-1913]

Pull Request - State: closed - Opened by eweitz over 4 years ago
Labels: security-risk: low

#83 - use validation wrapper function in manage_study.py

Pull Request - State: closed - Opened by jlchang over 4 years ago - 1 comment
Labels: security-risk: low

#81 - Report code coverage metrics (SCP-1809)

Pull Request - State: closed - Opened by eweitz over 4 years ago - 1 comment

#80 - Test CLI upload and parse of cluster file

Pull Request - State: closed - Opened by eweitz over 4 years ago
Labels: security-risk: low

#79 - Validate metadata using convention

Pull Request - State: closed - Opened by eweitz almost 5 years ago
Labels: security-risk: low

#78 - CLI `verbose` option, refined messaging

Pull Request - State: closed - Opened by eweitz almost 5 years ago - 2 comments
Labels: security-risk: low

#77 - Implement file parsing via public CLI

Pull Request - State: closed - Opened by eweitz almost 5 years ago
Labels: security-risk: low

#76 - Fix nondeterministic test

Pull Request - State: closed - Opened by eweitz almost 5 years ago
Labels: security-risk: low

#75 - Continuous integration

Pull Request - State: closed - Opened by eweitz almost 5 years ago - 1 comment
Labels: security-risk: low

#74 - Login

Issue - State: closed - Opened by sjwalker223 almost 5 years ago - 7 comments

#73 - No gene gene expression in the tSNE

Issue - State: closed - Opened by kvshams almost 5 years ago - 3 comments

#72 - How to handle mtx files in R

Issue - State: closed - Opened by kvittingseerup almost 5 years ago - 5 comments

#71 - Information shared when login in with google

Issue - State: closed - Opened by kvittingseerup about 5 years ago - 1 comment

#70 - Change user-facing reference from "coordinate" file to "cluster" file

Pull Request - State: closed - Opened by jlchang about 5 years ago - 1 comment

#69 - Refactor script to make toy data

Pull Request - State: closed - Opened by eweitz about 5 years ago

#68 - dockerfile and WDL updates for inferCNV 0.99.7 in SCP

Pull Request - State: closed - Opened by jlchang about 5 years ago

#66 - Refine inferCNV workflow: HMM, threads, R 3.6, test data

Pull Request - State: closed - Opened by eweitz about 5 years ago - 1 comment

#65 - Difficulty in downloading data

Issue - State: closed - Opened by Jaremedwards about 5 years ago - 7 comments

#64 - Support study file upload via CLI and Python library

Pull Request - State: closed - Opened by eweitz over 5 years ago - 1 comment

#63 - What is daily quota?

Issue - State: closed - Opened by zhanxw over 5 years ago - 6 comments

#62 - Email sent to everyone when sharing a project

Issue - State: closed - Opened by gaelcge over 5 years ago - 1 comment

#61 - inferCNV beta

Pull Request - State: closed - Opened by eweitz over 5 years ago

#60 - Add BSD3 license

Pull Request - State: closed - Opened by eweitz over 5 years ago

#59 - studies missing from previous portal

Issue - State: closed - Opened by sandrine-muller-research over 5 years ago - 2 comments

#58 - Turn off todo args

Pull Request - State: closed - Opened by TimothyTickle over 5 years ago

#57 - Upstream adapter script for inferCNV reference analysis

Pull Request - State: closed - Opened by eweitz over 5 years ago

#56 - Human cell atlas data portal?

Issue - State: closed - Opened by Bohdan-Khomtchouk over 5 years ago - 4 comments

#55 - Support reference cell groups in matrix_to_ideogram_annots.py

Pull Request - State: closed - Opened by eweitz over 5 years ago

#54 - Note needed Google Cloud SDK set-up

Pull Request - State: closed - Opened by eweitz over 5 years ago

#53 - Remove shell prompts from commands

Pull Request - State: closed - Opened by Alanocallaghan over 5 years ago - 1 comment

#52 - Extracting study metadata

Issue - State: closed - Opened by Alanocallaghan over 5 years ago - 11 comments

#51 - Hyperlink DOI to preferred resolver

Pull Request - State: closed - Opened by katrinleinweber over 5 years ago - 1 comment

#50 - Python library and basic CLI for SCP REST API

Pull Request - State: closed - Opened by eweitz over 5 years ago

#49 - Update inferCNV to v0.8.2

Pull Request - State: closed - Opened by eweitz over 5 years ago - 2 comments

#48 - Studies loading very slowly

Issue - State: closed - Opened by gurmank over 5 years ago - 8 comments

#47 - Cleaning up inferCNV dependencies

Pull Request - State: closed - Opened by bistline over 5 years ago

#46 - Citation information

Issue - State: closed - Opened by Bohdan-Khomtchouk over 5 years ago - 3 comments

#45 - Adding infercnv-alpha dockerfile

Pull Request - State: closed - Opened by bistline over 5 years ago

#44 - Pipeline for ideogram expression means

Pull Request - State: closed - Opened by eweitz over 5 years ago

#43 - Cross comparison

Issue - State: closed - Opened by gaelcge over 5 years ago - 12 comments

#42 - Cannot open any studies

Issue - State: closed - Opened by nkogan over 5 years ago - 4 comments

#41 - Can not modify the study data

Issue - State: closed - Opened by kvshams over 5 years ago - 2 comments

#40 - Explore Tab Contents Never Load

Issue - State: closed - Opened by DarioS over 5 years ago - 13 comments

#39 - Remove migrated code

Pull Request - State: closed - Opened by eweitz over 5 years ago - 1 comment

#38 - Scatter Plot

Issue - State: closed - Opened by DarioS over 5 years ago - 5 comments

#37 - Parse genome assemblies for SCP species integration

Pull Request - State: closed - Opened by eweitz almost 6 years ago - 2 comments

#36 - Cannot add a study

Issue - State: closed - Opened by slowkow almost 6 years ago - 5 comments

#35 - REST API?

Issue - State: closed - Opened by Bohdan-Khomtchouk almost 6 years ago - 3 comments

#34 - Toy Data Generator Updates

Pull Request - State: closed - Opened by YanayRosen almost 6 years ago

#33 - Uploaded Site Figures For Dot Plot

Pull Request - State: closed - Opened by YanayRosen almost 6 years ago

#32 - adding requirements information for running python scripts

Pull Request - State: closed - Opened by bistline almost 6 years ago

#31 - Fixed sorting headers and added directory support

Pull Request - State: closed - Opened by YanayRosen almost 6 years ago

#30 - Sparse matrix sorting script

Pull Request - State: closed - Opened by YanayRosen almost 6 years ago