Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / brentp/somalier issues and pull requests
#51 - Basic IBSX question
Issue -
State: closed - Opened by holtjma over 4 years ago
- 5 comments
#50 - Error: unhandled exception: Illegal parameter in singular value decomposition gesdd
Issue -
State: open - Opened by ekarlins over 4 years ago
- 9 comments
#50 - Error: unhandled exception: Illegal parameter in singular value decomposition gesdd
Issue -
State: open - Opened by ekarlins over 4 years ago
- 9 comments
#49 - add option to scale ibs0 and ibs2 by n
Issue -
State: closed - Opened by brentp over 4 years ago
#49 - add option to scale ibs0 and ibs2 by n
Issue -
State: closed - Opened by brentp over 4 years ago
#48 - meaning of warning:cant use more than 65535 sites
Issue -
State: open - Opened by danrlu over 4 years ago
- 4 comments
#48 - meaning of warning:cant use more than 65535 sites
Issue -
State: open - Opened by danrlu over 4 years ago
- 4 comments
#47 - wrong header on relate pairs output
Issue -
State: closed - Opened by fgvieira over 4 years ago
- 1 comment
#47 - wrong header on relate pairs output
Issue -
State: closed - Opened by fgvieira over 4 years ago
- 1 comment
#46 - Crash with 0.2.9
Issue -
State: closed - Opened by holtjma over 4 years ago
- 8 comments
#46 - Crash with 0.2.9
Issue -
State: closed - Opened by holtjma over 4 years ago
- 8 comments
#45 - Limit number of threads used
Issue -
State: closed - Opened by fgvieira over 4 years ago
- 5 comments
#45 - Limit number of threads used
Issue -
State: closed - Opened by fgvieira over 4 years ago
- 5 comments
#44 - Allows for mix of AD and MIN_DP in combined GVCF files, prioritizes exact matches of alleles when selecting sites
Pull Request -
State: closed - Opened by ameynert over 4 years ago
- 3 comments
#44 - Allows for mix of AD and MIN_DP in combined GVCF files, prioritizes exact matches of alleles when selecting sites
Pull Request -
State: closed - Opened by ameynert over 4 years ago
- 3 comments
#43 - Distinguish between bam files having the same bam sample ID
Issue -
State: closed - Opened by chenwenan almost 5 years ago
- 3 comments
#43 - Distinguish between bam files having the same bam sample ID
Issue -
State: closed - Opened by chenwenan almost 5 years ago
- 3 comments
#42 - show warning when .somalier files have no sites with depth > 0
Issue -
State: open - Opened by taytayp almost 5 years ago
- 4 comments
#42 - show warning when .somalier files have no sites with depth > 0
Issue -
State: open - Opened by taytayp almost 5 years ago
- 4 comments
#41 - Added option to prefix sample names in the digests
Pull Request -
State: closed - Opened by kpalin almost 5 years ago
- 4 comments
#41 - Added option to prefix sample names in the digests
Pull Request -
State: closed - Opened by kpalin almost 5 years ago
- 4 comments
#40 - unspecified parent
Issue -
State: open - Opened by brentp almost 5 years ago
#40 - unspecified parent
Issue -
State: open - Opened by brentp almost 5 years ago
#39 - gVCF v. VCF outputs
Issue -
State: closed - Opened by holtjma almost 5 years ago
- 5 comments
#38 - html: hover in select-box should show short description
Issue -
State: closed - Opened by brentp almost 5 years ago
- 1 comment
#38 - html: hover in select-box should show short description
Issue -
State: closed - Opened by brentp almost 5 years ago
- 1 comment
#37 - `Argument list too long' on 30k samples
Issue -
State: closed - Opened by asazonov about 5 years ago
- 2 comments
#37 - `Argument list too long' on 30k samples
Issue -
State: closed - Opened by asazonov about 5 years ago
- 2 comments
#36 - Feature request: output per site info (e.g. genotype, depth)
Issue -
State: open - Opened by fgvieira about 5 years ago
- 4 comments
#36 - Feature request: output per site info (e.g. genotype, depth)
Issue -
State: open - Opened by fgvieira about 5 years ago
- 4 comments
#35 - ancestry
Issue -
State: open - Opened by brentp about 5 years ago
#35 - ancestry
Issue -
State: open - Opened by brentp about 5 years ago
#34 - Deep
Pull Request -
State: closed - Opened by brentp about 5 years ago
#34 - Deep
Pull Request -
State: closed - Opened by brentp about 5 years ago
#33 - Feature request: option to ignore filters
Issue -
State: closed - Opened by holtjma about 5 years ago
- 5 comments
#33 - Feature request: option to ignore filters
Issue -
State: closed - Opened by holtjma about 5 years ago
- 5 comments
#32 - subset unrelated samples for large cohorts
Issue -
State: closed - Opened by brentp about 5 years ago
- 1 comment
#32 - subset unrelated samples for large cohorts
Issue -
State: closed - Opened by brentp about 5 years ago
- 1 comment
#31 - `[somalier] found 0 sites' error when extracting from array .vcf.gz
Issue -
State: closed - Opened by asazonov about 5 years ago
- 31 comments
#31 - `[somalier] found 0 sites' error when extracting from array .vcf.gz
Issue -
State: closed - Opened by asazonov about 5 years ago
- 31 comments
#29 - Add groups
Pull Request -
State: closed - Opened by brentp about 5 years ago
#29 - Add groups
Pull Request -
State: closed - Opened by brentp about 5 years ago
#28 - Add principal component export for bg and sample in ancestry-predict.py
Pull Request -
State: closed - Opened by tstannius about 5 years ago
- 4 comments
#28 - Add principal component export for bg and sample in ancestry-predict.py
Pull Request -
State: closed - Opened by tstannius about 5 years ago
- 4 comments
#27 - Feature Request: Support gVCF
Issue -
State: closed - Opened by holtjma about 5 years ago
- 13 comments
#27 - Feature Request: Support gVCF
Issue -
State: closed - Opened by holtjma about 5 years ago
- 13 comments
#26 - Suggestion: use groups info (same individual) to infer expected relatedness
Issue -
State: closed - Opened by fgvieira about 5 years ago
- 5 comments
#26 - Suggestion: use groups info (same individual) to infer expected relatedness
Issue -
State: closed - Opened by fgvieira about 5 years ago
- 5 comments
#25 - Add plot option to ancestry-predict.py
Issue -
State: closed - Opened by fgvieira about 5 years ago
#25 - Add plot option to ancestry-predict.py
Issue -
State: closed - Opened by fgvieira about 5 years ago
#24 - `ancestry-predict.py` error
Issue -
State: closed - Opened by fgvieira about 5 years ago
- 2 comments
#24 - `ancestry-predict.py` error
Issue -
State: closed - Opened by fgvieira about 5 years ago
- 2 comments
#23 - correct for population structure in relatedness
Issue -
State: open - Opened by brentp over 5 years ago
#23 - correct for population structure in relatedness
Issue -
State: open - Opened by brentp over 5 years ago
#22 - release 0.2.1?
Issue -
State: closed - Opened by brwnj over 5 years ago
- 1 comment
#21 - Updates results.html
Pull Request -
State: closed - Opened by brwnj over 5 years ago
#21 - Updates results.html
Pull Request -
State: closed - Opened by brwnj over 5 years ago
#20 - Updates HTML
Pull Request -
State: closed - Opened by brwnj over 5 years ago
- 1 comment
#20 - Updates HTML
Pull Request -
State: closed - Opened by brwnj over 5 years ago
- 1 comment
#19 - new tool fam-finder
Issue -
State: closed - Opened by brentp over 5 years ago
#19 - new tool fam-finder
Issue -
State: closed - Opened by brentp over 5 years ago
#18 - unify markers for GRCh37, hg38
Issue -
State: closed - Opened by brentp over 5 years ago
- 1 comment
#18 - unify markers for GRCh37, hg38
Issue -
State: closed - Opened by brentp over 5 years ago
- 1 comment
#17 - add genomic depth view
Issue -
State: closed - Opened by brentp over 5 years ago
- 1 comment
#17 - add genomic depth view
Issue -
State: closed - Opened by brentp over 5 years ago
- 1 comment
#16 - Sub commands
Pull Request -
State: closed - Opened by brentp over 5 years ago
#16 - Sub commands
Pull Request -
State: closed - Opened by brentp over 5 years ago
#15 - .html - toggling 'unrelated' data on/off makes portion of 'related' data invisible
Issue -
State: closed - Opened by JosephMcCarter over 5 years ago
- 3 comments
#14 - Some grouped pairs in groups.csv shown as 'unrelated' in .html
Issue -
State: closed - Opened by JosephMcCarter over 5 years ago
- 7 comments
#14 - Some grouped pairs in groups.csv shown as 'unrelated' in .html
Issue -
State: closed - Opened by JosephMcCarter over 5 years ago
- 7 comments
#13 - nan values break output .html
Issue -
State: closed - Opened by JosephMcCarter over 5 years ago
- 3 comments
#12 - ENH: diagnostic output of proportion of sites with AB not in [0.2, 0.8]
Issue -
State: closed - Opened by brentp over 5 years ago
- 1 comment
#11 - relatedness calculation
Issue -
State: closed - Opened by danielecook almost 6 years ago
- 2 comments
#10 - html: add box to enter sample name for highlighting.
Issue -
State: closed - Opened by brentp almost 6 years ago
#9 - Occasional access errors with http file pointers: Read block operation failed with error 2 after 0 of 4 bytes
Issue -
State: open - Opened by avilella almost 6 years ago
- 4 comments
#8 - cross individual contamination estimation
Issue -
State: open - Opened by mflevine almost 6 years ago
- 36 comments
#7 - Large number of n_unknown
Issue -
State: closed - Opened by mflevine almost 6 years ago
- 7 comments
#6 - output % of split reads
Issue -
State: open - Opened by brentp almost 6 years ago
#5 - relatedness = -nan and no HETs found
Issue -
State: closed - Opened by lconde-ucl almost 6 years ago
- 14 comments
#4 - Erroneous "index not found" errors
Issue -
State: closed - Opened by jblachly almost 6 years ago
- 12 comments
#3 - cancer ChIPseq data and whole exome data
Issue -
State: closed - Opened by crazyhottommy over 6 years ago
- 2 comments
#2 - site-selection with BS-Seq in mind
Issue -
State: closed - Opened by brentp over 6 years ago
- 1 comment
#1 - images
Issue -
State: closed - Opened by brentp over 6 years ago