Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / brentp/somalier issues and pull requests
#142 - HTML Report Doesn't Record Execution Parameters
Issue -
State: open - Opened by DarioS 16 days ago
- 1 comment
#100 - Matching Called VCF and Uncalled CRAMs
Issue -
State: open - Opened by marcustutert over 2 years ago
- 6 comments
#100 - Matching Called VCF and Uncalled CRAMs
Issue -
State: open - Opened by marcustutert over 2 years ago
- 6 comments
#99 - Filtering on nsites
Issue -
State: open - Opened by marcustutert over 2 years ago
- 5 comments
#99 - Filtering on nsites
Issue -
State: open - Opened by marcustutert over 2 years ago
- 5 comments
#98 - Error extracting from a VCF
Issue -
State: open - Opened by marcustutert over 2 years ago
- 1 comment
#98 - Error extracting from a VCF
Issue -
State: open - Opened by marcustutert over 2 years ago
- 1 comment
#97 - merging somalier files for different chromosomes
Issue -
State: closed - Opened by burakalver over 2 years ago
- 4 comments
#97 - merging somalier files for different chromosomes
Issue -
State: closed - Opened by burakalver over 2 years ago
- 4 comments
#96 - Error with find-sites
Issue -
State: open - Opened by ashotmarg over 2 years ago
- 15 comments
#96 - Error with find-sites
Issue -
State: open - Opened by ashotmarg over 2 years ago
- 15 comments
#95 - Increasing Number of SNPs improving inference?
Issue -
State: open - Opened by marcustutert almost 3 years ago
- 2 comments
#95 - Increasing Number of SNPs improving inference?
Issue -
State: open - Opened by marcustutert almost 3 years ago
- 2 comments
#94 - No output - docker
Issue -
State: closed - Opened by krukanna almost 3 years ago
- 4 comments
#94 - No output - docker
Issue -
State: closed - Opened by krukanna almost 3 years ago
- 4 comments
#93 - somalier ancestry and relate freeze on writing output on BeeGFS filesystem
Issue -
State: open - Opened by edg1983 almost 3 years ago
- 5 comments
#93 - somalier ancestry and relate freeze on writing output on BeeGFS filesystem
Issue -
State: open - Opened by edg1983 almost 3 years ago
- 5 comments
#92 - Bioconda recipe for somalier
Issue -
State: closed - Opened by tamuanand almost 3 years ago
- 3 comments
#92 - Bioconda recipe for somalier
Issue -
State: closed - Opened by tamuanand almost 3 years ago
- 3 comments
#91 - known mouse sites
Issue -
State: open - Opened by igordot almost 3 years ago
- 5 comments
#91 - known mouse sites
Issue -
State: open - Opened by igordot almost 3 years ago
- 5 comments
#90 - Sample id duplicates
Issue -
State: closed - Opened by andrewpatto almost 3 years ago
- 6 comments
#90 - Sample id duplicates
Issue -
State: closed - Opened by andrewpatto almost 3 years ago
- 6 comments
#89 - Runtime with large datasets
Issue -
State: open - Opened by marcustutert almost 3 years ago
- 39 comments
#89 - Runtime with large datasets
Issue -
State: open - Opened by marcustutert almost 3 years ago
- 39 comments
#88 - Found Zero Sites
Issue -
State: open - Opened by marcustutert almost 3 years ago
- 9 comments
#88 - Found Zero Sites
Issue -
State: open - Opened by marcustutert almost 3 years ago
- 9 comments
#87 - Licensing
Issue -
State: closed - Opened by bballew almost 3 years ago
- 2 comments
#87 - Licensing
Issue -
State: closed - Opened by bballew almost 3 years ago
- 2 comments
#86 - n in relatedness result
Issue -
State: closed - Opened by wac almost 3 years ago
- 1 comment
#86 - n in relatedness result
Issue -
State: closed - Opened by wac almost 3 years ago
- 1 comment
#85 - Update README.md to include cmd descriptions
Pull Request -
State: closed - Opened by zztin almost 3 years ago
- 2 comments
#85 - Update README.md to include cmd descriptions
Pull Request -
State: closed - Opened by zztin almost 3 years ago
- 2 comments
#84 - Update relate.nim for better formatting
Pull Request -
State: closed - Opened by zztin almost 3 years ago
- 1 comment
#84 - Update relate.nim for better formatting
Pull Request -
State: closed - Opened by zztin almost 3 years ago
- 1 comment
#83 - HTML report
Issue -
State: closed - Opened by Danisov almost 3 years ago
- 5 comments
#83 - HTML report
Issue -
State: closed - Opened by Danisov almost 3 years ago
- 5 comments
#82 - Issue extracting variants with VCF
Issue -
State: closed - Opened by holtjma about 3 years ago
- 5 comments
#82 - Issue extracting variants with VCF
Issue -
State: closed - Opened by holtjma about 3 years ago
- 5 comments
#81 - somalier ancestry : Argument list too long
Issue -
State: closed - Opened by nrosewick about 3 years ago
- 3 comments
#81 - somalier ancestry : Argument list too long
Issue -
State: closed - Opened by nrosewick about 3 years ago
- 3 comments
#80 - Comparing Results with Multiple Samples with Same Name
Issue -
State: closed - Opened by brcopeland about 3 years ago
- 1 comment
#80 - Comparing Results with Multiple Samples with Same Name
Issue -
State: closed - Opened by brcopeland about 3 years ago
- 1 comment
#79 - Checking concordance between RNA and DNA samples
Issue -
State: closed - Opened by boyangzhao over 3 years ago
- 4 comments
#79 - Checking concordance between RNA and DNA samples
Issue -
State: closed - Opened by boyangzhao over 3 years ago
- 4 comments
#78 - relatedness results question
Issue -
State: closed - Opened by JonEilers over 3 years ago
- 4 comments
#78 - relatedness results question
Issue -
State: closed - Opened by JonEilers over 3 years ago
- 4 comments
#77 - SIGSEGV error for somalier ancestry
Issue -
State: closed - Opened by nswh over 3 years ago
- 5 comments
#77 - SIGSEGV error for somalier ancestry
Issue -
State: closed - Opened by nswh over 3 years ago
- 5 comments
#76 - missing pairs - somalier relate v. >= 0.2.7
Issue -
State: closed - Opened by LolloPero over 3 years ago
- 5 comments
#76 - missing pairs - somalier relate v. >= 0.2.7
Issue -
State: closed - Opened by LolloPero over 3 years ago
- 5 comments
#75 - minimum number of sites
Issue -
State: open - Opened by igordot over 3 years ago
- 5 comments
#75 - minimum number of sites
Issue -
State: open - Opened by igordot over 3 years ago
- 5 comments
#74 - Definition of relatedness as implemented in somalier
Issue -
State: open - Opened by asp8200 over 3 years ago
- 1 comment
#74 - Definition of relatedness as implemented in somalier
Issue -
State: open - Opened by asp8200 over 3 years ago
- 1 comment
#73 - Sex QC
Issue -
State: closed - Opened by jrejente over 3 years ago
- 9 comments
#73 - Sex QC
Issue -
State: closed - Opened by jrejente over 3 years ago
- 9 comments
#72 - Running somalier on bam files in s3?
Issue -
State: open - Opened by nspies-celsiustx over 3 years ago
- 3 comments
#72 - Running somalier on bam files in s3?
Issue -
State: open - Opened by nspies-celsiustx over 3 years ago
- 3 comments
#71 - Issue with reading mutect2 output on somalier (fileformat=VCFv4.2)
Issue -
State: closed - Opened by brain-discourse almost 4 years ago
- 5 comments
#71 - Issue with reading mutect2 output on somalier (fileformat=VCFv4.2)
Issue -
State: closed - Opened by brain-discourse almost 4 years ago
- 5 comments
#70 - Feature request: install somalier from anaconda
Issue -
State: closed - Opened by kate-simonova almost 4 years ago
- 3 comments
#70 - Feature request: install somalier from anaconda
Issue -
State: closed - Opened by kate-simonova almost 4 years ago
- 3 comments
#69 - How to specify tumor/normal pairs
Issue -
State: closed - Opened by V-Catherine almost 4 years ago
- 9 comments
#69 - How to specify tumor/normal pairs
Issue -
State: closed - Opened by V-Catherine almost 4 years ago
- 9 comments
#68 - Static OSX binary?
Issue -
State: open - Opened by ssadedin almost 4 years ago
- 6 comments
#68 - Static OSX binary?
Issue -
State: open - Opened by ssadedin almost 4 years ago
- 6 comments
#67 - Ancestry estimate using gnomad v3 data?
Issue -
State: open - Opened by theodorc about 4 years ago
- 2 comments
#67 - Ancestry estimate using gnomad v3 data?
Issue -
State: open - Opened by theodorc about 4 years ago
- 2 comments
#66 - ancestry output error
Issue -
State: closed - Opened by olenamarchenko1234 about 4 years ago
- 6 comments
#66 - ancestry output error
Issue -
State: closed - Opened by olenamarchenko1234 about 4 years ago
- 6 comments
#65 - ENH: add read_haps algorithm to estimate contamination
Issue -
State: open - Opened by brentp about 4 years ago
- 5 comments
#65 - ENH: add read_haps algorithm to estimate contamination
Issue -
State: open - Opened by brentp about 4 years ago
- 5 comments
#64 - any plans to bring back the option to use multiple threads?
Issue -
State: open - Opened by svural about 4 years ago
- 1 comment
#64 - any plans to bring back the option to use multiple threads?
Issue -
State: open - Opened by svural about 4 years ago
- 1 comment
#63 - Comparison 1 to n samples
Issue -
State: open - Opened by svural about 4 years ago
#63 - Comparison 1 to n samples
Issue -
State: open - Opened by svural about 4 years ago
#62 - full results from relate output
Issue -
State: open - Opened by rdmorin about 4 years ago
- 4 comments
#62 - full results from relate output
Issue -
State: open - Opened by rdmorin about 4 years ago
- 4 comments
#61 - Runtime for ancestry estimate?
Issue -
State: open - Opened by bhanratt about 4 years ago
- 9 comments
#61 - Runtime for ancestry estimate?
Issue -
State: open - Opened by bhanratt about 4 years ago
- 9 comments
#60 - Generated html file empty
Issue -
State: open - Opened by dBenedek about 4 years ago
- 9 comments
#60 - Generated html file empty
Issue -
State: open - Opened by dBenedek about 4 years ago
- 9 comments
#59 - Ancestry Error: unhandled exception: couldn't open sketch file
Issue -
State: closed - Opened by bopohdr about 4 years ago
- 7 comments
#59 - Ancestry Error: unhandled exception: couldn't open sketch file
Issue -
State: closed - Opened by bopohdr about 4 years ago
- 7 comments
#58 - High relatedness for many unrelated individuals
Issue -
State: closed - Opened by lindenb over 4 years ago
- 5 comments
#58 - High relatedness for many unrelated individuals
Issue -
State: closed - Opened by lindenb over 4 years ago
- 5 comments
#57 - headers for unprefixed genome builds have chr prefix
Issue -
State: open - Opened by rdmorin over 4 years ago
#57 - headers for unprefixed genome builds have chr prefix
Issue -
State: open - Opened by rdmorin over 4 years ago
#56 - Allow to specify homozygote call threashold
Issue -
State: closed - Opened by fgvieira over 4 years ago
#56 - Allow to specify homozygote call threashold
Issue -
State: closed - Opened by fgvieira over 4 years ago
#55 - Somalier underestimates relatedness if low sites overlap
Issue -
State: closed - Opened by fgvieira over 4 years ago
- 3 comments
#55 - Somalier underestimates relatedness if low sites overlap
Issue -
State: closed - Opened by fgvieira over 4 years ago
- 3 comments
#54 - Missing relatedness pair
Issue -
State: closed - Opened by eyu8 over 4 years ago
- 2 comments
#54 - Missing relatedness pair
Issue -
State: closed - Opened by eyu8 over 4 years ago
- 2 comments
#53 - Illegals storage access. (Attempt to read from nil)
Issue -
State: closed - Opened by vdejager over 4 years ago
- 6 comments
#53 - Illegals storage access. (Attempt to read from nil)
Issue -
State: closed - Opened by vdejager over 4 years ago
- 6 comments
#52 - Docker v0.2.10 missing
Issue -
State: closed - Opened by Briteguy over 4 years ago
- 3 comments
#52 - Docker v0.2.10 missing
Issue -
State: closed - Opened by Briteguy over 4 years ago
- 3 comments
#51 - Basic IBSX question
Issue -
State: closed - Opened by holtjma over 4 years ago
- 5 comments