biopragmatics/biomappings issues and pull requests

#168 - Update MeSH predictions and curations

Pull Request - State: closed - Opened by bgyori 5 months ago

#167 - Obsolete terms in mappings tables

Issue - State: open - Opened by bgyori 5 months ago

#166 - More ChEBI-MeSH curations

Pull Request - State: closed - Opened by bgyori 5 months ago

#165 - Set text-nowrap for -B- and -N- columns

Pull Request - State: closed - Opened by kkaris 7 months ago - 1 comment

#164 - Update webapp footer

Pull Request - State: closed - Opened by bgyori 7 months ago

#163 - Improve docs about data model for predictions

Pull Request - State: closed - Opened by cthoyt 8 months ago

#162 - Curate CVX mismatches

Pull Request - State: closed - Opened by cthoyt 9 months ago

#161 - Map between VO and ROR

Issue - State: open - Opened by cthoyt about 1 year ago

#160 - Add custom predictions and custom deployment tutorials

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#159 - Add VO-DrugBank predictions and curations

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#158 - Add broad/narrow curation to interface

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#157 - Use preferred prefixes in SSSOM

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#156 - Improve OBO contribution script

Pull Request - State: open - Opened by cthoyt about 1 year ago

#155 - Ensure SSSOM file is valid

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#154 - Published SSSOM mapping set is not compliant with SSSOM TSV specification

Issue - State: closed - Opened by gouttegd about 1 year ago - 3 comments

#153 - Sure about CC0? Are labels CC0? - possible license compatibility issues

Issue - State: open - Opened by lubianat about 1 year ago - 2 comments

#152 - Curated some MONDO-MeSH mappings (sumir)

Pull Request - State: closed - Opened by sumirp about 1 year ago - 1 comment

#151 - Curated 1 mapping (sumir)

Pull Request - State: closed - Opened by sumirp about 1 year ago - 3 comments

#150 - Update testing with py38

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#149 - Add generic contribution workflow to OBO flat files

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#148 - Improve trackability of committer

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#147 - CVX and MeSH mappings

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#146 - Add test curations

Pull Request - State: open - Opened by svempati21 over 1 year ago

#145 - Add summary page button

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#144 - Update linting on predictions

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#143 - Override MIRIAM OBI pattern

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#142 - Make tests reusable

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#141 - Improve redundancy filtering

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#140 - Enable custom curation files

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#139 - Add mapping commons information

Issue - State: open - Opened by cthoyt over 1 year ago - 3 comments

#138 - Add negative mappings to SSSOM output

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#137 - Generate MAxO-MeSH predictions

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#136 - Jt curation branch

Pull Request - State: closed - Opened by jrteuton over 1 year ago

#135 - Additional cell, cell line, and tissue curations

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#134 - Update state handling

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#133 - Add CLO processing notebook

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 5 comments

#132 - Add more curations

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#131 - Fix gilda prediction workflow

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#130 - Add custom predictions flag in web app runner

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#129 - Add UBERON-BTO predictions

Pull Request - State: closed - Opened by bgyori over 1 year ago - 2 comments

#128 - BTO to UBERON mapping

Issue - State: closed - Opened by arjunkrish over 1 year ago - 3 comments

#127 - Curate non-trivial incorrect ChEBI-MeSH relations

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 2 comments

#126 - Erroneous rows in biomappings.sssom.tsv?

Issue - State: closed - Opened by glass-ships over 1 year ago - 8 comments

#125 - More MeSH-ChEBI curations

Pull Request - State: closed - Opened by bgyori over 1 year ago - 2 comments

#124 - Generate and curate VO-MeSH mappings

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#123 - Enforce using CURIEs for all relationships

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 3 comments

#122 - Replace ad-hoc type with semapv term

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#121 - Update to use semapv (part 1)

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#120 - Predict and curate HP-MESH mappings

Pull Request - State: closed - Opened by bgyori over 1 year ago

#119 - lexical score?

Issue - State: closed - Opened by tommycarstensen over 1 year ago - 1 comment

#118 - Improve prediction linting

Pull Request - State: closed - Opened by cthoyt almost 2 years ago

#117 - Propagate metadata from predictions into curated files

Pull Request - State: closed - Opened by cthoyt almost 2 years ago

#116 - Cleanup and update

Pull Request - State: closed - Opened by cthoyt almost 2 years ago

#115 - Add epidemiology curation

Pull Request - State: closed - Opened by cthoyt almost 2 years ago

#114 - Improved provenance model

Issue - State: closed - Opened by cthoyt almost 2 years ago - 1 comment

#113 - Assess curation precision

Pull Request - State: closed - Opened by cthoyt almost 2 years ago

#112 - Import DrugBank-DrugCentral mappings

Pull Request - State: open - Opened by cthoyt about 2 years ago - 3 comments

#111 - INDRA-based prioritization

Issue - State: open - Opened by cthoyt about 2 years ago

#110 - Mapping tagging system

Issue - State: open - Opened by cthoyt about 2 years ago

#109 - Assess coverage of Bio-ID

Issue - State: open - Opened by cthoyt about 2 years ago

#108 - Fill out project skeleton

Pull Request - State: closed - Opened by cthoyt about 2 years ago

#107 - Some MeSH curations

Pull Request - State: closed - Opened by bgyori about 2 years ago - 1 comment

#106 - Add project governance documentation

Pull Request - State: closed - Opened by cthoyt about 2 years ago

#105 - Update MONDO local unique identifiers

Pull Request - State: closed - Opened by cthoyt about 2 years ago - 2 comments

#104 - Curate additional DOID-MESH mappings and contribute to DOID

Pull Request - State: closed - Opened by bgyori about 2 years ago - 2 comments

#103 - Inconsistent naming in PredictionTuple

Issue - State: open - Opened by bgyori about 2 years ago

#102 - Add hetionet duplication and value added notebooks

Pull Request - State: closed - Opened by cthoyt about 2 years ago

#101 - Add bulk curation script

Pull Request - State: closed - Opened by cthoyt over 2 years ago

#100 - Fix SSSOM export

Pull Request - State: closed - Opened by cthoyt over 2 years ago

#99 - Improve interface

Pull Request - State: closed - Opened by cthoyt over 2 years ago

#98 - Additional curation and updates for bioregistry

Pull Request - State: closed - Opened by cthoyt over 2 years ago

#97 - Curate AGRO-AGROVOC-Mappings

Pull Request - State: closed - Opened by cthoyt over 2 years ago

#96 - Curate AGRO-AGROVOC Mappings

Pull Request - State: closed - Opened by cthoyt over 2 years ago

#95 - Curate MONDO-MeSH mappings

Pull Request - State: closed - Opened by bgyori over 2 years ago

#94 - Prefix validation is inconsistent for OBOfoundry ontologies not in identifiers.org

Issue - State: closed - Opened by bgyori over 2 years ago - 1 comment

#93 - More curations

Pull Request - State: closed - Opened by bgyori over 2 years ago

#92 - Miscellaneous curation

Pull Request - State: closed - Opened by bgyori over 2 years ago - 1 comment

#91 - Predict and curate CL-MESH mappings

Pull Request - State: closed - Opened by bgyori over 2 years ago

#90 - Redundant exact match curations

Issue - State: closed - Opened by bgyori over 2 years ago - 2 comments

#89 - Generate and curate a new set of MESH-CHEBI mappings

Pull Request - State: closed - Opened by bgyori over 2 years ago

#88 - Upload to NDEx workflow failing

Issue - State: closed - Opened by bgyori over 2 years ago - 2 comments

#87 - Build error related to SSSOM export

Issue - State: closed - Opened by bgyori over 2 years ago - 1 comment

#86 - Add UBERON-MeSH mappings

Pull Request - State: closed - Opened by bgyori over 2 years ago

#85 - Installation for linux - Note

Issue - State: closed - Opened by KrishnaTO almost 3 years ago - 5 comments

#84 - Triangle curation interface

Issue - State: open - Opened by cthoyt almost 3 years ago - 1 comment

#83 - Add AGRO-AGROVOC mappings

Pull Request - State: closed - Opened by cthoyt almost 3 years ago - 8 comments

#82 - Redundant PubChem-MeSH mappings

Issue - State: open - Opened by bgyori about 3 years ago - 1 comment

#81 - More manual DOID-MeSH curation

Pull Request - State: closed - Opened by bgyori about 3 years ago

#80 - Remove more redundant predictions and curate some DOID mappings

Pull Request - State: closed - Opened by bgyori about 3 years ago - 4 comments

#79 - Remove DOID mappings where primary mappings exist

Pull Request - State: closed - Opened by bgyori about 3 years ago - 1 comment

#78 - Breaking changes in bioregistry

Issue - State: closed - Opened by bgyori about 3 years ago - 3 comments

#77 - Add manually curated PubChem-MeSH mappings

Pull Request - State: closed - Opened by bgyori about 3 years ago - 1 comment

#76 - Add more specific script URL for predictions

Pull Request - State: closed - Opened by bgyori about 3 years ago

#75 - Add sort by confidence to web app

Pull Request - State: closed - Opened by cthoyt about 3 years ago

#74 - Assorted DOID and ChEBI curations

Pull Request - State: closed - Opened by cthoyt about 3 years ago

#73 - Prediction creates duplicates, possibly depending on source

Issue - State: closed - Opened by allenbaron about 3 years ago - 3 comments

#72 - Add dark mode to webapp

Issue - State: open - Opened by bgyori about 3 years ago - 1 comment
Labels: enhancement

GitHub / biopragmatics/biomappings issues and pull requests