Ecosyste.ms: Issues

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GitHub / biolink/biolink-model issues and pull requests

#1198 - correct prefix for ORPHANET?

Issue - State: closed - Opened by sierra-moxon almost 2 years ago - 8 comments
Labels: question, identifiers

#1195 - Response

Pull Request - State: closed - Opened by cbizon almost 2 years ago - 5 comments

#1194 - Update predicate_mapping.yaml

Pull Request - State: closed - Opened by cbizon almost 2 years ago

#1193 - Update predicate_mapping.yaml

Pull Request - State: closed - Opened by cbizon almost 2 years ago

#1189 - Removing stray list

Pull Request - State: closed - Opened by cbizon almost 2 years ago

#1184 - removing inverse and opposite from subclass, superclass predicates

Pull Request - State: closed - Opened by sierra-moxon almost 2 years ago

#1165 - Duplicate prefix mappings

Issue - State: closed - Opened by EvanDietzMorris about 2 years ago
Labels: identifiers

#1164 - 'Article' documentation mentions 'xref' field as inherited from 'gene product mixin'

Issue - State: open - Opened by vincentvialard about 2 years ago - 2 comments
Labels: documentation

#1163 - Types of subject and object not accessible in documentation of associations

Issue - State: closed - Opened by vincentvialard about 2 years ago - 2 comments
Labels: documentation

#1162 - Title of the 'referenced by class' section of the documentation is misleading

Issue - State: closed - Opened by vincentvialard about 2 years ago - 2 comments
Labels: documentation

#1161 - Domain 'None' in the documentation does not feel right

Issue - State: closed - Opened by vincentvialard about 2 years ago - 2 comments
Labels: documentation

#1160 - Documentation top level navigation is disorienting

Issue - State: closed - Opened by vincentvialard about 2 years ago - 2 comments
Labels: documentation

#1158 - Problems with the documentation of the category attribute

Issue - State: closed - Opened by vincentvialard about 2 years ago - 1 comment
Labels: documentation

#1157 - Breadcrumb navigation broken in some parts of the documentation

Issue - State: closed - Opened by vincentvialard about 2 years ago - 3 comments
Labels: documentation

#1156 - Biolink Categories and Node Norm Mappings

Issue - State: closed - Opened by karafecho about 2 years ago - 5 comments
Labels: question, help-desk

#1155 - References to deprecated 'relation' in documentation

Issue - State: closed - Opened by vincentvialard about 2 years ago - 1 comment
Labels: documentation, working-group/predicates

#1154 - Missing documentation page for 'edge_label'

Issue - State: closed - Opened by vincentvialard about 2 years ago - 1 comment
Labels: documentation

#1153 - Fixing snomed

Pull Request - State: closed - Opened by cmungall about 2 years ago

#1152 - 'actively involved in' and its inverse are mapped to the same term

Issue - State: closed - Opened by balhoff about 2 years ago - 1 comment
Labels: bug

#1149 - Syntax errors in example docs

Pull Request - State: closed - Opened by sierra-moxon about 2 years ago

#1146 - refactor helpdesk template to include contact information, fixes #1138

Pull Request - State: closed - Opened by sierra-moxon about 2 years ago - 1 comment

#1145 - Current Biolink model website and BMT give conflicting information?

Issue - State: closed - Opened by slobentanzer about 2 years ago - 3 comments
Labels: question, documentation

#1143 - Can we flatten subclass_of relations into node properties -

Issue - State: closed - Opened by sierra-moxon about 2 years ago - 4 comments
Labels: working-group/predicates

#1142 - fixes #1132 : include mappings and id prefixes for "chemical role"

Pull Request - State: closed - Opened by sierra-moxon about 2 years ago

#1139 - add infores catalog as a nodes tsv file

Pull Request - State: closed - Opened by sierra-moxon about 2 years ago

#1137 - replace spaces with underscores in enumerations

Pull Request - State: closed - Opened by sierra-moxon about 2 years ago

#1136 - update doc gen to not include yamlfile

Pull Request - State: closed - Opened by sierra-moxon about 2 years ago

#1119 - CLINVAR vs ClinVarVariant

Issue - State: closed - Opened by karafecho about 2 years ago - 1 comment
Labels: working-group/clinical, identifiers

#1118 - what is correct predicate to find protein domains from a protein ID?

Issue - State: open - Opened by sandrine-m about 2 years ago - 7 comments
Labels: question, working-group/predicates

#1108 - distribute biolink-model.yaml with pypi distribution

Issue - State: open - Opened by sierra-moxon about 2 years ago - 2 comments
Labels: LinkML, devops

#1107 - Align and connect 'supporting document' and 'publications' edge properties

Issue - State: closed - Opened by mbrush about 2 years ago - 9 comments
Labels: working-group/EPC

#1107 - Align and connect 'supporting document' and 'publications' edge properties

Issue - State: closed - Opened by mbrush about 2 years ago - 9 comments
Labels: working-group/EPC

#1097 - Add CHEBI:is_a as an exact mapping for biolink:subclass_of

Issue - State: open - Opened by vdancik about 2 years ago - 8 comments
Labels: working-group/chemical, help-desk, working-group/MolePro

#1093 - child association slots not appearing on association slot webpage

Issue - State: closed - Opened by mbrush about 2 years ago - 3 comments
Labels: documentation

#1081 - Biolink github.io index page for named things is not populated

Issue - State: closed - Opened by slobentanzer about 2 years ago - 2 comments
Labels: documentation

#1050 - Request for clinical data study attributes needed for Aug QotM

Issue - State: closed - Opened by jh111 over 2 years ago - 1 comment
Labels: question, working-group/clinical, help-desk

#1050 - Request for clinical data study attributes needed for Aug QotM

Issue - State: closed - Opened by jh111 over 2 years ago - 1 comment
Labels: question, working-group/clinical, help-desk

#1014 - Representing ChEMBL activities and assays

Issue - State: open - Opened by vdancik over 2 years ago - 5 comments
Labels: working-group/chemical, help-desk, working-group/MolePro

#1001 - refactor actions associated with build system

Issue - State: closed - Opened by sierra-moxon over 2 years ago - 1 comment
Labels: devops

#1000 - refactor build system - use poetry instead of pipenv

Issue - State: closed - Opened by sierra-moxon over 2 years ago - 1 comment
Labels: devops

#951 - Biolink documentation: move useful links to top of the left sidebar

Issue - State: closed - Opened by nlharris over 2 years ago - 2 comments
Labels: documentation, help-desk

#950 - Modelling sets in Biolink

Issue - State: open - Opened by RichardBruskiewich over 2 years ago - 4 comments
Labels: working-group/chemical, needs-review

#920 - Use Apache 2.0 instead of CC0

Issue - State: open - Opened by noelmcloughlin almost 3 years ago - 13 comments
Labels: policy

#881 - CHEBI mappings for biolink:SmallMolecule

Issue - State: open - Opened by balhoff about 3 years ago - 9 comments
Labels: question, working-group/chemical, mapping, working-group/MolePro

#829 - canonical_predicate meta-predicate should have its own documentation page

Issue - State: open - Opened by cmungall over 3 years ago - 2 comments
Labels: documentation, working-group/predicates

#828 - markdown issue: subsets are showing up as classes

Issue - State: closed - Opened by cmungall over 3 years ago - 1 comment
Labels: bug, documentation

#700 - Biolink Model use cases, tests, documentation

Issue - State: closed - Opened by sierra-moxon over 3 years ago - 2 comments
Labels: documentation, QC

#667 - biolink-model RDF is unusable

Issue - State: open - Opened by balhoff over 3 years ago - 15 comments
Labels: bug, LinkML

#426 - Provide additional(?) formally documented guidelines for curating mappings, etc. of edges (and nodes?) in the Biolink Model

Issue - State: closed - Opened by RichardBruskiewich about 4 years ago - 5 comments
Labels: enhancement, documentation

#403 - Indicate when there are children

Issue - State: closed - Opened by cbizon over 4 years ago - 2 comments
Labels: enhancement, documentation

#402 - Make it easier to get to the related_to hierarchy in the docs

Issue - State: closed - Opened by cbizon over 4 years ago - 3 comments
Labels: enhancement, documentation

#111 - Generated UML diagrams are too busy

Issue - State: closed - Opened by deepakunni3 over 6 years ago - 6 comments
Labels: enhancement, documentation