belbio/bel issues and pull requests

#104 - Bump certifi from 2020.12.5 to 2022.12.7

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#103 - Bump lxml from 4.6.2 to 4.9.1

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#102 - Bump httpx from 0.16.1 to 0.23.0

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#101 - Bump lxml from 4.6.2 to 4.6.5

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 2 comments
Labels: dependencies

#100 - Bump urllib3 from 1.26.2 to 1.26.5

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#99 - Bump urllib3 from 1.26.2 to 1.26.4

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 2 comments
Labels: dependencies

#98 - Bump py from 1.9.0 to 1.10.0

Pull Request - State: open - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#97 - Bump lxml from 4.6.2 to 4.6.3

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 2 comments
Labels: dependencies

#96 - Bump pygments from 2.7.3 to 2.7.4

Pull Request - State: open - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#95 - Bump pyyaml from 5.3.1 to 5.4

Pull Request - State: open - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#94 - Bump jinja2 from 2.11.2 to 2.11.3

Pull Request - State: open - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#93 - Computed edges for tloc()

Issue - State: open - Opened by wshayes over 4 years ago

#92 - Computed edge for transcription factors

Issue - State: open - Opened by wshayes over 4 years ago

#91 - Validation issue - pmod()

Issue - State: open - Opened by wshayes almost 5 years ago
Labels: bug

#90 - bel parsing and validation

Issue - State: open - Opened by wshayes almost 5 years ago

#89 - BEL validation/pipeline performance

Issue - State: open - Opened by wshayes almost 5 years ago

#88 - API - forward slash problem

Issue - State: open - Opened by wshayes almost 5 years ago

#87 - Term equivalents - multiple equivalents for same namespace

Issue - State: open - Opened by wshayes almost 5 years ago

#86 - Cache BEL validation for faster turnaround

Issue - State: closed - Opened by wshayes almost 5 years ago

#85 - Causal edge type missing from orthologized causal edges

Issue - State: closed - Opened by wshayes almost 5 years ago

#84 - Bump bleach from 3.1.0 to 3.1.1

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 3 comments
Labels: dependencies

#83 - BELAPI plus BEL repo - convert to monorepo

Issue - State: open - Opened by wshayes over 5 years ago

#82 - Semantic checks

Issue - State: open - Opened by wshayes over 5 years ago

#81 - BEL completion errors

Issue - State: open - Opened by wshayes over 5 years ago

#80 - HGNC namespace updates

Issue - State: closed - Opened by wshayes over 5 years ago - 1 comment

#79 - PMID not working

Issue - State: closed - Opened by wshayes over 5 years ago

#78 - Yaml warning

Pull Request - State: closed - Opened by BenDavidAaron almost 6 years ago - 1 comment

#77 - Unsafe YAML load warning

Issue - State: closed - Opened by BenDavidAaron almost 6 years ago

#76 - orthologous relationship

Issue - State: open - Opened by wshayes about 6 years ago

#75 - equivalentTo relationship

Issue - State: open - Opened by wshayes about 6 years ago

#74 - Update belbio GitHub organization picture

Issue - State: open - Opened by cthoyt about 6 years ago - 1 comment

#73 - Improve bel pipeline processing

Issue - State: closed - Opened by wshayes over 6 years ago

#72 - Contains subcomponents

Issue - State: open - Opened by wshayes over 6 years ago
Labels: in progress

#71 - Bump pytest from 3.6.3 to 3.7.4

Pull Request - State: closed - Opened by dependabot-preview[bot] over 6 years ago - 2 comments
Labels: dependencies

#70 - Bump sphinx-click from 1.2.0 to 1.3.0

Pull Request - State: closed - Opened by dependabot-preview[bot] over 6 years ago - 2 comments
Labels: dependencies

#69 - Caching issue for BEL pipeline

Issue - State: open - Opened by wshayes over 6 years ago
Labels: in progress

#68 - Bump pytest-flakes from 2.0.0 to 3.0.2

Pull Request - State: closed - Opened by dependabot-preview[bot] over 6 years ago - 1 comment
Labels: dependencies

#67 - Bump pytest from 3.5.1 to 3.6.0

Pull Request - State: closed - Opened by dependabot-preview[bot] over 6 years ago - 1 comment
Labels: dependencies

#66 - Bump sphinx-rtd-theme from 0.3.0 to 0.3.1

Pull Request - State: closed - Opened by dependabot-preview[bot] over 6 years ago - 1 comment
Labels: dependencies

#65 - Bump python-dateutil from 2.6.1 to 2.7.3

Pull Request - State: closed - Opened by dependabot-preview[bot] over 6 years ago - 1 comment
Labels: dependencies

#64 - Bump python-arango from 3.12.1 to 4.1.0

Pull Request - State: closed - Opened by dependabot-preview[bot] over 6 years ago - 1 comment
Labels: dependencies

#63 - Bump wheel from 0.30.0 to 0.31.1

Pull Request - State: closed - Opened by dependabot-preview[bot] over 6 years ago - 1 comment
Labels: dependencies

#62 - Bump releases from 1.4.2 to 1.5.0

Pull Request - State: closed - Opened by dependabot-preview[bot] over 6 years ago - 1 comment
Labels: dependencies

#61 - Bump mypy from 0.560 to 0.600

Pull Request - State: closed - Opened by dependabot-preview[bot] over 6 years ago - 1 comment
Labels: dependencies

#60 - Bump sphinx from 1.7.1 to 1.7.5

Pull Request - State: closed - Opened by dependabot-preview[bot] over 6 years ago - 1 comment
Labels: dependencies

#59 - Support custom/experimental versions of BEL

Issue - State: closed - Opened by wshayes almost 7 years ago
Labels: enhancement, contracted

#58 - Hierarchical querying

Issue - State: open - Opened by wshayes almost 7 years ago
Labels: enhancement, contracted

#57 - Support different annotation formats in Nanopubs

Issue - State: open - Opened by wshayes almost 7 years ago
Labels: enhancement, contracted

#56 - Add bulk assertion or nanopub? option

Issue - State: open - Opened by wshayes almost 7 years ago
Labels: enhancement, contracted

#55 - Bump releases from 1.4.0 to 1.4.2

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 1 comment
Labels: dependencies

#54 - Bump pytest from 3.4.1 to 3.5.1

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 1 comment
Labels: dependencies

#53 - Bump mypy from 0.560 to 0.590

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 2 comments
Labels: dependencies

#52 - Bump sphinx-rtd-theme from 0.2.4 to 0.3.0

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 1 comment
Labels: dependencies

#51 - Bump Sphinx from 1.7.1 to 1.7.4

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 2 comments
Labels: dependencies

#50 - Bump sphinx-click from 1.0.4 to 1.2.0

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 1 comment
Labels: dependencies

#49 - Bump wheel from 0.30.0 to 0.31.0

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 2 comments
Labels: dependencies

#48 - Bump pytest-mypy from 0.3.0 to 0.3.1

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 1 comment
Labels: dependencies

#47 - Arangodb batch load refactor

Issue - State: closed - Opened by wshayes almost 7 years ago

#46 - Config take 3

Issue - State: closed - Opened by wshayes almost 7 years ago - 2 comments

#45 - Bump sphinx-click from 1.0.4 to 1.1.0

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 2 comments
Labels: dependencies

#44 - Bump sphinx-autodoc-typehints from 1.2.5 to 1.3.0

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 1 comment
Labels: dependencies

#43 - Bump python-dateutil from 2.6.1 to 2.7.2

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 2 comments
Labels: dependencies

#42 - Bump pytest from 3.4.1 to 3.5.0

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 2 comments
Labels: dependencies

#41 - Bump releases from 1.4.0 to 1.4.1

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 2 comments
Labels: dependencies

#40 - Bump mypy from 0.560 to 0.580

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 2 comments
Labels: dependencies

#39 - Bump Sphinx from 1.7.1 to 1.7.2

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 2 comments
Labels: dependencies

#38 - Bump twine from 1.9.1 to 1.11.0

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 1 comment
Labels: dependencies

#37 - complex completion doesn't suggest named complexes

Issue - State: closed - Opened by wshayes almost 7 years ago
Labels: bug

#36 - Log errors on 4xx REST API results

Issue - State: closed - Opened by wshayes almost 7 years ago

#35 - Bump sphinx-autodoc-typehints from 1.2.3 to 1.2.5

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 1 comment
Labels: dependencies

#34 - Bump Sphinx from 1.6.5 to 1.7.1

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 1 comment
Labels: dependencies

#33 - Bump pytest from 3.3.1 to 3.4.1

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 1 comment
Labels: dependencies

#32 - Bump pytest-sugar from 0.9.0 to 0.9.1

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 1 comment
Labels: dependencies

#31 - Bump coverage from 4.4.2 to 4.5.1

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 7 years ago - 1 comment
Labels: dependencies

#30 - Enhance help for completion

Issue - State: open - Opened by wshayes almost 7 years ago

#29 - term completion disappears after 10th char

Issue - State: closed - Opened by wshayes almost 7 years ago

#28 - Bump Sphinx from 1.6.5 to 1.6.6

Pull Request - State: closed - Opened by dependabot-preview[bot] about 7 years ago - 1 comment
Labels: dependencies

#27 - Bump pytest from 3.3.1 to 3.4.0

Pull Request - State: closed - Opened by dependabot-preview[bot] about 7 years ago - 1 comment
Labels: dependencies

#26 - Bump sphinx-autodoc-typehints from 1.2.3 to 1.2.4

Pull Request - State: closed - Opened by dependabot-preview[bot] about 7 years ago - 1 comment
Labels: dependencies

#25 - BEL Network similarity measure

Issue - State: open - Opened by wshayes about 7 years ago

#24 - Update BEL1 docs

Issue - State: closed - Opened by wshayes about 7 years ago

#23 - Add mypy typings check

Issue - State: open - Opened by wshayes about 7 years ago

#22 - Orthologize edge annotation

Issue - State: open - Opened by wshayes about 7 years ago
Labels: in progress

#21 - Add nanopub validation feature

Issue - State: closed - Opened by wshayes about 7 years ago

#20 - Nested statements

Issue - State: open - Opened by wshayes about 7 years ago
Labels: ready

#19 - nanopub converter tool

Issue - State: open - Opened by wshayes about 7 years ago - 2 comments
Labels: ready

#18 - Add click documentation to sphinx

Issue - State: closed - Opened by wshayes about 7 years ago
Labels: ready

#17 - Add process flow diagram to root readme

Issue - State: open - Opened by wshayes about 7 years ago - 2 comments

#16 - populationAbundance() function

Issue - State: open - Opened by wshayes about 7 years ago
Labels: BEL-Lang

#15 - Add label to subject/object

Issue - State: open - Opened by wshayes about 7 years ago
Labels: BEL-Lang

#14 - Add geneAbundance modifier function

Issue - State: open - Opened by wshayes about 7 years ago - 2 comments
Labels: BEL-Lang

#13 - Method to sort function parameters for EdgeStore

Issue - State: open - Opened by wshayes about 7 years ago - 2 comments

#12 - Add examples to BEL YAML file

Issue - State: open - Opened by wshayes about 7 years ago - 3 comments
Labels: ready

#11 - BEL -> BELglish?/BEnglish?

Issue - State: open - Opened by wshayes about 7 years ago - 4 comments
Labels: ready

#10 - Add BEL statement completion method

Issue - State: closed - Opened by wshayes about 7 years ago

#9 - HGVS validation

Issue - State: open - Opened by wshayes about 7 years ago - 1 comment

#8 - Activate commented computed signatures

Issue - State: open - Opened by wshayes about 7 years ago
Labels: in progress

#7 - complex function signature bug

Issue - State: closed - Opened by wshayes about 7 years ago - 1 comment
Labels: bug

#6 - Finish CodeClimate test coverage setup

Issue - State: open - Opened by wshayes about 7 years ago
Labels: ready

#2 - Bump mypy from 0.550 to 0.560

Pull Request - State: closed - Opened by dependabot-preview[bot] about 7 years ago
Labels: dependencies

GitHub / belbio/bel issues and pull requests