alexchwong/SpliceWiz issues and pull requests

#73 - Problem in ontologySpecies when using buildRef command

Issue - State: closed - Opened by Drosofriends 26 days ago - 2 comments

#72 - Error Building Human Reference

Issue - State: closed - Opened by Omics66427 27 days ago - 2 comments

#71 - 1.7.4 devel

Pull Request - State: closed - Opened by alexchwong about 2 months ago

#70 - Error reference building gff version is 3 not 2

Issue - State: open - Opened by NextGenSeek about 2 months ago - 6 comments

#69 - Error on reference building

Issue - State: open - Opened by t3h4nt1chr15t about 2 months ago - 13 comments

#68 - Error on building reference

Issue - State: open - Opened by JarickW about 2 months ago - 3 comments

#67 - build reference error

Issue - State: open - Opened by mingzCHIU about 2 months ago - 5 comments

#66 - Version 1.7.2

Pull Request - State: closed - Opened by alexchwong 3 months ago

#65 - Singularity container definition file

Issue - State: closed - Opened by clydeugene 3 months ago - 2 comments

#64 - collateData error

Issue - State: closed - Opened by alicinwndlnd 4 months ago - 1 comment

#63 - STAR_BuildRef Error

Issue - State: closed - Opened by GimenaA 4 months ago - 2 comments

#62 - NxtSE Loading Failed

Issue - State: closed - Opened by DarioS 7 months ago - 1 comment

#61 - Vignette Parameter Description Inconsistent

Issue - State: open - Opened by DarioS 7 months ago - 1 comment

#60 - 1.5.3 devel

Pull Request - State: closed - Opened by alexchwong 8 months ago

#59 - Error while using buildRef() for Arabidopsis thaliana

Issue - State: closed - Opened by Desertodunas 9 months ago - 6 comments

#58 - Missing exons in SpliceWiz.ref.gz

Issue - State: closed - Opened by akikuno 9 months ago - 2 comments

#57 - 1.5.1 devel

Pull Request - State: closed - Opened by alexchwong 10 months ago

#56 - BuildRef Ensure there are valid entries with type == `CDS`"

Issue - State: closed - Opened by droplet-lab 10 months ago - 3 comments

#55 - Add missing include

Pull Request - State: closed - Opened by pekkarr 11 months ago - 1 comment

#54 - Cannot use multi-threaded mode on MacBook Pro M1 Max

Issue - State: closed - Opened by biga94 12 months ago - 7 comments

#53 - buildRef()

Issue - State: closed - Opened by chrismahony about 1 year ago - 13 comments

#52 - Mention STAR under `SystemRequirements:`

Issue - State: open - Opened by HenrikBengtsson about 1 year ago - 4 comments

#51 - Issue building Reference

Issue - State: closed - Opened by mabinjw about 1 year ago - 11 comments

#50 - 1.3.4 devel

Pull Request - State: closed - Opened by alexchwong about 1 year ago

#49 - Issue trying to collate data

Issue - State: closed - Opened by dksenthil about 1 year ago - 2 comments

#48 - Process intron over multiple chromosomes in .grlGaps when using BuildRef

Issue - State: closed - Opened by SWCode132 over 1 year ago - 5 comments

#47 - 1.3.3 release

Pull Request - State: closed - Opened by alexchwong over 1 year ago

#46 - Error: could not find function "getCoverageData

Issue - State: closed - Opened by michael-mazzucco over 1 year ago - 4 comments

#45 - 1.3.3 release

Pull Request - State: closed - Opened by alexchwong over 1 year ago

#44 - Build Reference issue: Column 'ccds_id' not found

Issue - State: closed - Opened by sdimitrije over 1 year ago - 6 comments

#43 - 1.3.2 hotfix

Pull Request - State: closed - Opened by alexchwong over 1 year ago

#42 - Bugfixes & version bump 1.3.1

Pull Request - State: closed - Opened by alexchwong over 1 year ago

#41 - 1.1.8 devel plot objects

Pull Request - State: closed - Opened by alexchwong over 1 year ago

#40 - 1.1.7 devel

Pull Request - State: closed - Opened by alexchwong over 1 year ago

#39 - buildRef with local gtf has minor bugs

Issue - State: closed - Opened by jiaco over 1 year ago - 7 comments

#38 - 1.1.6 release

Pull Request - State: closed - Opened by alexchwong over 1 year ago

#37 - 230110 go trial

Pull Request - State: closed - Opened by alexchwong over 1 year ago

#36 - 230110 go trial

Pull Request - State: closed - Opened by alexchwong over 1 year ago

#35 - 230110 go trial

Pull Request - State: closed - Opened by alexchwong over 1 year ago

#34 - about deltaPSI

Issue - State: closed - Opened by rezarahman12 almost 2 years ago - 2 comments

#33 - Collating Experiment error

Issue - State: closed - Opened by jh4yd almost 2 years ago - 3 comments

#32 - Performing differential analysis

Issue - State: closed - Opened by rezarahman12 almost 2 years ago - 4 comments

#31 - Add readme instructions for htslib version

Pull Request - State: closed - Opened by alexchwong almost 2 years ago

#30 - Hotfix 1.1.5

Pull Request - State: closed - Opened by alexchwong almost 2 years ago

#29 - hotfix 1.1.4

Pull Request - State: closed - Opened by alexchwong almost 2 years ago

#28 - Converting FASTA to local TwoBitFile...Error

Issue - State: closed - Opened by rezarahman12 almost 2 years ago - 4 comments

#27 - reference build step in splicewiz

Issue - State: closed - Opened by rezarahman12 almost 2 years ago - 2 comments

#26 - Version bump 1.1.3

Pull Request - State: closed - Opened by alexchwong almost 2 years ago

#25 - 221204 htslib bench - improvements for SpliceWiz v1.1.3

Pull Request - State: closed - Opened by alexchwong almost 2 years ago

#24 - SpliceWiz intalltion error

Issue - State: closed - Opened by rezarahman12 almost 2 years ago - 4 comments

#23 - 221204 optimise cpp

Pull Request - State: closed - Opened by alexchwong almost 2 years ago

#22 - 221117 edge r trial

Pull Request - State: closed - Opened by alexchwong almost 2 years ago

#21 - SpliceWiz package website by pkgdown

Pull Request - State: closed - Opened by cparsania almost 2 years ago - 1 comment

#20 - 221103 resolve seqmerge issues

Pull Request - State: closed - Opened by alexchwong almost 2 years ago

#19 - collateData function error -> Incompatible join types

Issue - State: closed - Opened by ZLS01 about 2 years ago - 3 comments

#18 - 0.99.5 release

Pull Request - State: closed - Opened by alexchwong about 2 years ago

#17 - 0.99.4 release

Pull Request - State: closed - Opened by alexchwong about 2 years ago

#16 - Error in makeMeanPSI

Issue - State: closed - Opened by cparsania about 2 years ago