Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / YuLab-SMU/ggtree issues and pull requests
#632 - Is it possible to add spaces or separation between the squares using gheatmap?
Issue -
State: open - Opened by KevinLopezReyes 6 days ago
#631 - Added support for XStringSet in msaplot
Pull Request -
State: open - Opened by yasche 18 days ago
#630 - How to move x axis in heatmap by geom_fruit to top?
Issue -
State: open - Opened by SilentGene 18 days ago
#629 - geom_strip has issues with label and angle="auto"
Issue -
State: open - Opened by Thomas-Hagan 19 days ago
#628 - "gradient" in geom_hilight does not work properly with coord_flip() or layout_dendrogram()
Issue -
State: open - Opened by PandengWang 19 days ago
#627 - Failed convertion ggtree into plotly
Issue -
State: open - Opened by yoelii about 1 month ago
- 1 comment
#626 - ggtree::msaplot in your own example posted on Rbloggers is not working
Issue -
State: open - Opened by monis4567 about 2 months ago
- 1 comment
#625 - BiocManager::install("ggtree"), Error in get(x, envir = ns, inherits = FALSE) : object 'rect_to_poly' not found
Issue -
State: open - Opened by danli349 about 2 months ago
- 2 comments
#624 - Update DESCRIPTION
Pull Request -
State: closed - Opened by catalintucureanu 2 months ago
#623 - Interactivity with ggiraph
Issue -
State: open - Opened by royfrancis 2 months ago
#622 - layout argument can be a function, which can re-calculate the coord
Pull Request -
State: closed - Opened by xiangpin 3 months ago
- 2 comments
#621 - geom_hilight
Issue -
State: open - Opened by drdna 3 months ago
- 3 comments
#620 - Can not find function getsubtree
Issue -
State: open - Opened by ShangLiii 3 months ago
- 2 comments
#619 - No "read.r8s"
Issue -
State: open - Opened by WXwangxia 3 months ago
- 2 comments
#618 - ggtree adds unexpected branch/node
Issue -
State: closed - Opened by Edouard94 4 months ago
- 2 comments
#617 - Sorting Problem of Evolutionary Leaf Node Labels//咨询进化树叶节点的排序问题
Issue -
State: open - Opened by shenzhenzth 4 months ago
- 3 comments
#616 - mv %<+% to ggfun
Pull Request -
State: closed - Opened by xiangpin 4 months ago
#615 - geom_taxalink error "as_string() Can't convert `NULL` to a string."
Issue -
State: open - Opened by ammaraziz 4 months ago
- 2 comments
#614 - chunky resolution of circular tree segments
Issue -
State: open - Opened by ulo 4 months ago
#613 - theme_tree2 scale bar width
Issue -
State: open - Opened by cabraham03 6 months ago
#612 - 无法正常绘制layout = "equal-angle"的tree
Issue -
State: open - Opened by SeanZhi 6 months ago
#611 - Expose position argument for `geom_range()`
Pull Request -
State: closed - Opened by willgearty 6 months ago
#610 - Same name on one tree (2 copies), add links to another tree problem
Issue -
State: open - Opened by jianshu93 6 months ago
#609 - Problems with Collapse function
Issue -
State: open - Opened by nedwalsh 6 months ago
#608 - Basic functionality missing from ggtree
Issue -
State: open - Opened by drdna 7 months ago
#607 - geom_highlight compresses the tree slightly
Issue -
State: open - Opened by maxfarrell 7 months ago
- 1 comment
#606 - Fix #582 Update DESCRIPTION
Pull Request -
State: closed - Opened by macroscian 7 months ago
#605 - geom_hilight rectangle unreasonably long
Issue -
State: open - Opened by ETaSky 7 months ago
#604 - facet_plot will not plot correctly align to branch in ggtree
Issue -
State: open - Opened by cms72 7 months ago
#603 - geom_cladelab doesn't facet
Issue -
State: open - Opened by dansmith01 8 months ago
#602 - Tree tips not colored according to specified colors
Issue -
State: open - Opened by JakobDrumm 8 months ago
- 2 comments
#601 - rect_to_poly issue
Issue -
State: open - Opened by GuangchuangYu 8 months ago
- 10 comments
Labels: bug
#600 - Unwanted white lines between tiles in gheatmap layout circular/fan
Issue -
State: open - Opened by ruthvikpsi 8 months ago
#599 - Error with geom_inset of nodepies onto circular/radial/fan trees
Issue -
State: open - Opened by ruthvikpsi 8 months ago
- 1 comment
#598 - layout_dendrogram and theme_tree2 are incompatiable
Issue -
State: closed - Opened by SamPassmore 8 months ago
- 1 comment
#597 - Issue with linear tree with only one parent and one
Issue -
State: open - Opened by haochenz96 9 months ago
#596 - Request to add roundrect.r option to layout.params
Issue -
State: open - Opened by n8layman 9 months ago
- 1 comment
#595 - ggtree not able to produce emojis in color
Issue -
State: open - Opened by sophiaaredas 11 months ago
#594 - 'cophyloplot' equivalent function
Issue -
State: closed - Opened by Puriney 11 months ago
- 2 comments
#593 - Collapsing clade in circular layout gives curved min/max/mixed triangles
Issue -
State: open - Opened by AroneyS 12 months ago
#592 - colour of scale_alpha_continuous
Issue -
State: open - Opened by MjelleLab about 1 year ago
#591 - Add geom_hilight for phyla.
Issue -
State: open - Opened by MjelleLab about 1 year ago
#590 - HMP_tree raw data? availability
Issue -
State: open - Opened by MjelleLab about 1 year ago
- 1 comment
#589 - Coarse arc segmentation with circular layout
Issue -
State: open - Opened by alephreish about 1 year ago
#588 - multiple ggtree functions error with "could not find function "offspring.tbl_tree_item""
Issue -
State: closed - Opened by nelsonruth11 about 1 year ago
- 6 comments
#587 - Phylopic image background is coloured when using circular tree layout
Issue -
State: closed - Opened by dr-budd about 1 year ago
- 2 comments
#586 - How to get the node number
Issue -
State: open - Opened by Ruiqi-CUB about 1 year ago
- 1 comment
#585 - geom_hilight does not highlight the whole clade
Issue -
State: open - Opened by BioinfoNovice about 1 year ago
- 4 comments
#584 - Scale on the y-axis in a tree rotated with 'layout_dendrogram()'
Issue -
State: open - Opened by gvaleman about 1 year ago
- 1 comment
#583 - Explicit handling of treetime outputs
Issue -
State: open - Opened by uee9 about 1 year ago
#582 - when installing via renv or pak, it sometimes will try to pull treeio from github.com (not from bioconductor)
Issue -
State: closed - Opened by idavydov about 1 year ago
#581 - Error running drop.tip example
Issue -
State: closed - Opened by pedur1 about 1 year ago
- 1 comment
#580 - use check_installed to check whether the suggenst pkg is installed
Pull Request -
State: closed - Opened by xiangpin about 1 year ago
#579 - updata according to the function migrate of tidytree
Pull Request -
State: closed - Opened by xiangpin about 1 year ago
#578 - suppress the warning message about check tbl_tree object in tidytree
Pull Request -
State: closed - Opened by xiangpin about 1 year ago
#577 - Warnings generated by normal use of ggheatmap function
Issue -
State: open - Opened by AlexSCFraser about 1 year ago
- 1 comment
#576 - Remove Remotes dependency
Pull Request -
State: closed - Opened by AlexandreGuinaudeau about 1 year ago
- 2 comments
#575 - error in facet_plot():invalid tbl_tree object. Missing column: parent,node.
Issue -
State: open - Opened by Avamost1 about 1 year ago
- 1 comment
#574 - supporting linewidth and size in geom_tree
Pull Request -
State: closed - Opened by xiangpin about 1 year ago
- 1 comment
#573 - Cafe analysis
Issue -
State: open - Opened by Rhia15 over 1 year ago
#572 - Heatmap colors are showing transparent when alpha is not used
Issue -
State: open - Opened by ireneortega over 1 year ago
- 1 comment
#571 - DLL requires the use of native symbols
Issue -
State: closed - Opened by msubirana over 1 year ago
#570 - How to get the coordinate of the nodes of a circular tree by ggtree
Issue -
State: open - Opened by ARise-fox over 1 year ago
#569 - Only one category appearing with geom_fruit
Issue -
State: open - Opened by JSSaini over 1 year ago
- 8 comments
#568 - Not able to plot a daylight unrooted tree
Issue -
State: open - Opened by barizona over 1 year ago
- 4 comments
#567 - `geom_tiplab2(geom="phylopic",...)`: errors
Issue -
State: open - Opened by bschilder over 1 year ago
- 1 comment
#566 - `geom_tiplab2(geom="image",...)`: errors
Issue -
State: open - Opened by bschilder over 1 year ago
- 2 comments
#565 - Control x-axis ticks on geom_fruit
Issue -
State: open - Opened by MaximePolicarpo over 1 year ago
- 2 comments
#564 - read.beast does not exist
Issue -
State: closed - Opened by elizeng over 1 year ago
- 2 comments
#563 - plotting big tree error
Issue -
State: open - Opened by Asa12138 over 1 year ago
- 1 comment
#562 - Problem to use gheatmap with ggtree
Issue -
State: open - Opened by Fla1487 over 1 year ago
#561 - geom_edgelab() for labeling edges?
Issue -
State: open - Opened by vinwol over 1 year ago
#560 - Unable to set colors and generate a legend for a ggtree plot based on Species
Issue -
State: open - Opened by uceleste over 1 year ago
#559 - Install issue
Issue -
State: open - Opened by osoyer over 1 year ago
- 2 comments
#558 - Color coding tips and branches
Issue -
State: open - Opened by anzshahid over 1 year ago
- 1 comment
#557 - How to add group information to nodes?
Issue -
State: open - Opened by xieduo7 over 1 year ago
#556 - Changed branch length(hclust)
Issue -
State: open - Opened by mengchengyao over 1 year ago
- 1 comment
#555 - NAs in compareCluster
Issue -
State: open - Opened by Shankav over 1 year ago
#554 - Issue with the attacher %<+%
Issue -
State: closed - Opened by MaximePolicarpo almost 2 years ago
#553 - problem_of_revts()
Issue -
State: open - Opened by Hong-Wun almost 2 years ago
#552 - Have the branch fold backwards
Issue -
State: closed - Opened by Cristinex almost 2 years ago
#551 - scale_color_manual not working when geom_fruit (with geom = geom_boxplot) is used
Issue -
State: closed - Opened by Suirotras almost 2 years ago
- 2 comments
#550 - Plotting interaction data / two phylogenies in gheatmap?
Issue -
State: open - Opened by maxfarrell almost 2 years ago
#549 - using cli instead of warning_wrap
Pull Request -
State: closed - Opened by xiangpin almost 2 years ago
#548 - Depends were removed from ggplot2 version 3.4.0
Issue -
State: open - Opened by Baohua-Chen almost 2 years ago
- 2 comments
#547 - I cannot install ggtree in my Ubuntu [solved by following the solutions from post 544]
Issue -
State: open - Opened by shinysyk almost 2 years ago
#546 - Update inset.R
Pull Request -
State: closed - Opened by cmt2 almost 2 years ago
#545 - Some `layout` options cause error in ggtree()
Issue -
State: open - Opened by cmt2 almost 2 years ago
- 2 comments
#544 - Unable to install ggtree_3.2.1: object 'warning_wrap' not found
Issue -
State: closed - Opened by amizeranschi almost 2 years ago
- 8 comments
#543 - update ggtree to compatible with the ggplot2 3.4.0
Pull Request -
State: closed - Opened by xiangpin almost 2 years ago
#542 - flip tree function
Issue -
State: closed - Opened by antoine4ucsd almost 2 years ago
- 2 comments
#541 - Installation error: Error in get(x, envir = ns, inherits = FALSE) : object 'warning_wrap' not found
Issue -
State: closed - Opened by HenrikBengtsson almost 2 years ago
- 2 comments
#540 - Aligning tip labels in geom_tiplab results in error
Issue -
State: closed - Opened by egonozer almost 2 years ago
- 3 comments
#539 - geom_hilight based on node name [&&NHX:S=CladeName]
Issue -
State: open - Opened by francicco almost 2 years ago
- 1 comment
#538 - as.treedata creating label.x and label.y columns in some cases
Issue -
State: closed - Opened by nick-youngblut almost 2 years ago
- 1 comment
#537 - gheatmap cuts the top row and last column
Issue -
State: open - Opened by PSSchacksen almost 2 years ago
#536 - data formatting for ggheatmap()
Issue -
State: open - Opened by nick-youngblut almost 2 years ago
#535 - Expanded docs for geom_tiplab()
Issue -
State: open - Opened by nick-youngblut almost 2 years ago
- 3 comments
#534 - Error when trying to scale and collaps multiple clades on tree
Issue -
State: open - Opened by janstrauss1 about 2 years ago
- 4 comments
#533 - groupOTU adds an extra group called 0
Issue -
State: open - Opened by MarekGierlinski about 2 years ago
- 2 comments