Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / YuLab-SMU/ggtree issues and pull requests

#631 - Added support for XStringSet in msaplot

Pull Request - State: open - Opened by yasche 18 days ago

#627 - Failed convertion ggtree into plotly

Issue - State: open - Opened by yoelii about 1 month ago - 1 comment

#626 - ggtree::msaplot in your own example posted on Rbloggers is not working

Issue - State: open - Opened by monis4567 about 2 months ago - 1 comment

#624 - Update DESCRIPTION

Pull Request - State: closed - Opened by catalintucureanu 2 months ago

#623 - Interactivity with ggiraph

Issue - State: open - Opened by royfrancis 2 months ago

#622 - layout argument can be a function, which can re-calculate the coord

Pull Request - State: closed - Opened by xiangpin 3 months ago - 2 comments

#621 - geom_hilight

Issue - State: open - Opened by drdna 3 months ago - 3 comments

#620 - Can not find function getsubtree

Issue - State: open - Opened by ShangLiii 3 months ago - 2 comments

#619 - No "read.r8s"

Issue - State: open - Opened by WXwangxia 3 months ago - 2 comments

#618 - ggtree adds unexpected branch/node

Issue - State: closed - Opened by Edouard94 4 months ago - 2 comments

#616 - mv %<+% to ggfun

Pull Request - State: closed - Opened by xiangpin 4 months ago

#615 - geom_taxalink error "as_string() Can't convert `NULL` to a string."

Issue - State: open - Opened by ammaraziz 4 months ago - 2 comments

#614 - chunky resolution of circular tree segments

Issue - State: open - Opened by ulo 4 months ago

#613 - theme_tree2 scale bar width

Issue - State: open - Opened by cabraham03 6 months ago

#612 - 无法正常绘制layout = "equal-angle"的tree

Issue - State: open - Opened by SeanZhi 6 months ago

#611 - Expose position argument for `geom_range()`

Pull Request - State: closed - Opened by willgearty 6 months ago

#609 - Problems with Collapse function

Issue - State: open - Opened by nedwalsh 6 months ago

#608 - Basic functionality missing from ggtree

Issue - State: open - Opened by drdna 7 months ago

#607 - geom_highlight compresses the tree slightly

Issue - State: open - Opened by maxfarrell 7 months ago - 1 comment

#606 - Fix #582 Update DESCRIPTION

Pull Request - State: closed - Opened by macroscian 7 months ago

#605 - geom_hilight rectangle unreasonably long

Issue - State: open - Opened by ETaSky 7 months ago

#603 - geom_cladelab doesn't facet

Issue - State: open - Opened by dansmith01 8 months ago

#602 - Tree tips not colored according to specified colors

Issue - State: open - Opened by JakobDrumm 8 months ago - 2 comments

#601 - rect_to_poly issue

Issue - State: open - Opened by GuangchuangYu 8 months ago - 10 comments
Labels: bug

#599 - Error with geom_inset of nodepies onto circular/radial/fan trees

Issue - State: open - Opened by ruthvikpsi 8 months ago - 1 comment

#598 - layout_dendrogram and theme_tree2 are incompatiable

Issue - State: closed - Opened by SamPassmore 8 months ago - 1 comment

#596 - Request to add roundrect.r option to layout.params

Issue - State: open - Opened by n8layman 9 months ago - 1 comment

#595 - ggtree not able to produce emojis in color

Issue - State: open - Opened by sophiaaredas 11 months ago

#594 - 'cophyloplot' equivalent function

Issue - State: closed - Opened by Puriney 11 months ago - 2 comments

#592 - colour of scale_alpha_continuous

Issue - State: open - Opened by MjelleLab about 1 year ago

#591 - Add geom_hilight for phyla.

Issue - State: open - Opened by MjelleLab about 1 year ago

#590 - HMP_tree raw data? availability

Issue - State: open - Opened by MjelleLab about 1 year ago - 1 comment

#589 - Coarse arc segmentation with circular layout

Issue - State: open - Opened by alephreish about 1 year ago

#587 - Phylopic image background is coloured when using circular tree layout

Issue - State: closed - Opened by dr-budd about 1 year ago - 2 comments

#586 - How to get the node number

Issue - State: open - Opened by Ruiqi-CUB about 1 year ago - 1 comment

#585 - geom_hilight does not highlight the whole clade

Issue - State: open - Opened by BioinfoNovice about 1 year ago - 4 comments

#584 - Scale on the y-axis in a tree rotated with 'layout_dendrogram()'

Issue - State: open - Opened by gvaleman about 1 year ago - 1 comment

#583 - Explicit handling of treetime outputs

Issue - State: open - Opened by uee9 about 1 year ago

#581 - Error running drop.tip example

Issue - State: closed - Opened by pedur1 about 1 year ago - 1 comment

#580 - use check_installed to check whether the suggenst pkg is installed

Pull Request - State: closed - Opened by xiangpin about 1 year ago

#579 - updata according to the function migrate of tidytree

Pull Request - State: closed - Opened by xiangpin about 1 year ago

#578 - suppress the warning message about check tbl_tree object in tidytree

Pull Request - State: closed - Opened by xiangpin about 1 year ago

#577 - Warnings generated by normal use of ggheatmap function

Issue - State: open - Opened by AlexSCFraser about 1 year ago - 1 comment

#576 - Remove Remotes dependency

Pull Request - State: closed - Opened by AlexandreGuinaudeau about 1 year ago - 2 comments

#575 - error in facet_plot():invalid tbl_tree object. Missing column: parent,node.

Issue - State: open - Opened by Avamost1 about 1 year ago - 1 comment

#574 - supporting linewidth and size in geom_tree

Pull Request - State: closed - Opened by xiangpin about 1 year ago - 1 comment

#573 - Cafe analysis

Issue - State: open - Opened by Rhia15 over 1 year ago

#572 - Heatmap colors are showing transparent when alpha is not used

Issue - State: open - Opened by ireneortega over 1 year ago - 1 comment

#571 - DLL requires the use of native symbols

Issue - State: closed - Opened by msubirana over 1 year ago

#569 - Only one category appearing with geom_fruit

Issue - State: open - Opened by JSSaini over 1 year ago - 8 comments

#568 - Not able to plot a daylight unrooted tree

Issue - State: open - Opened by barizona over 1 year ago - 4 comments

#567 - `geom_tiplab2(geom="phylopic",...)`: errors

Issue - State: open - Opened by bschilder over 1 year ago - 1 comment

#566 - `geom_tiplab2(geom="image",...)`: errors

Issue - State: open - Opened by bschilder over 1 year ago - 2 comments

#565 - Control x-axis ticks on geom_fruit

Issue - State: open - Opened by MaximePolicarpo over 1 year ago - 2 comments

#564 - read.beast does not exist

Issue - State: closed - Opened by elizeng over 1 year ago - 2 comments

#563 - plotting big tree error

Issue - State: open - Opened by Asa12138 over 1 year ago - 1 comment

#562 - Problem to use gheatmap with ggtree

Issue - State: open - Opened by Fla1487 over 1 year ago

#561 - geom_edgelab() for labeling edges?

Issue - State: open - Opened by vinwol over 1 year ago

#559 - Install issue

Issue - State: open - Opened by osoyer over 1 year ago - 2 comments

#558 - Color coding tips and branches

Issue - State: open - Opened by anzshahid over 1 year ago - 1 comment

#557 - How to add group information to nodes?

Issue - State: open - Opened by xieduo7 over 1 year ago

#556 - Changed branch length(hclust)

Issue - State: open - Opened by mengchengyao over 1 year ago - 1 comment

#555 - NAs in compareCluster

Issue - State: open - Opened by Shankav over 1 year ago

#554 - Issue with the attacher %<+%

Issue - State: closed - Opened by MaximePolicarpo almost 2 years ago

#553 - problem_of_revts()

Issue - State: open - Opened by Hong-Wun almost 2 years ago

#552 - Have the branch fold backwards

Issue - State: closed - Opened by Cristinex almost 2 years ago

#551 - scale_color_manual not working when geom_fruit (with geom = geom_boxplot) is used

Issue - State: closed - Opened by Suirotras almost 2 years ago - 2 comments

#550 - Plotting interaction data / two phylogenies in gheatmap?

Issue - State: open - Opened by maxfarrell almost 2 years ago

#549 - using cli instead of warning_wrap

Pull Request - State: closed - Opened by xiangpin almost 2 years ago

#548 - Depends were removed from ggplot2 version 3.4.0

Issue - State: open - Opened by Baohua-Chen almost 2 years ago - 2 comments

#546 - Update inset.R

Pull Request - State: closed - Opened by cmt2 almost 2 years ago

#545 - Some `layout` options cause error in ggtree()

Issue - State: open - Opened by cmt2 almost 2 years ago - 2 comments

#544 - Unable to install ggtree_3.2.1: object 'warning_wrap' not found

Issue - State: closed - Opened by amizeranschi almost 2 years ago - 8 comments

#543 - update ggtree to compatible with the ggplot2 3.4.0

Pull Request - State: closed - Opened by xiangpin almost 2 years ago

#542 - flip tree function

Issue - State: closed - Opened by antoine4ucsd almost 2 years ago - 2 comments

#540 - Aligning tip labels in geom_tiplab results in error

Issue - State: closed - Opened by egonozer almost 2 years ago - 3 comments

#539 - geom_hilight based on node name [&&NHX:S=CladeName]

Issue - State: open - Opened by francicco almost 2 years ago - 1 comment

#538 - as.treedata creating label.x and label.y columns in some cases

Issue - State: closed - Opened by nick-youngblut almost 2 years ago - 1 comment

#537 - gheatmap cuts the top row and last column

Issue - State: open - Opened by PSSchacksen almost 2 years ago

#536 - data formatting for ggheatmap()

Issue - State: open - Opened by nick-youngblut almost 2 years ago

#535 - Expanded docs for geom_tiplab()

Issue - State: open - Opened by nick-youngblut almost 2 years ago - 3 comments

#534 - Error when trying to scale and collaps multiple clades on tree

Issue - State: open - Opened by janstrauss1 about 2 years ago - 4 comments

#533 - groupOTU adds an extra group called 0

Issue - State: open - Opened by MarekGierlinski about 2 years ago - 2 comments