TimoLassmann/kalign issues and pull requests

#46 - "illegal instruction" only on certain CPUs

Issue - State: open - Opened by luisas 2 months ago - 2 comments

#45 - Segmentation fault (core dumped)

Issue - State: closed - Opened by aebaci 3 months ago - 9 comments

#44 - "offending character" warnings

Issue - State: open - Opened by AledHe 6 months ago

#43 - kalign fail when sequences in input file are almost the same.

Issue - State: closed - Opened by xiekunwhy 7 months ago - 1 comment

#42 - Memory consumption usage

Issue - State: closed - Opened by Tang-pro 8 months ago - 4 comments

#41 - Version 3.4.0 seems to break clustal format parsers

Issue - State: closed - Opened by biomadeira 8 months ago - 3 comments

#40 - ‘KALIGN_PACKAGE_NAME’ undeclared (first use in this function)

Issue - State: closed - Opened by grenaud 10 months ago - 3 comments

#39 - Turning AVX2 on or off, the program produces different outputs

Issue - State: closed - Opened by Shawdox over 1 year ago - 4 comments

#38 - --type removed from kalign3

Issue - State: open - Opened by Rohit-Satyam over 1 year ago - 3 comments

#37 - Final characters are sometimes missing in alignment when one sequence is a prefix of another

Issue - State: closed - Opened by jeizenga almost 2 years ago - 2 comments

#36 - Many unwanted log messages are printed to stderr when using kalign as a library

Issue - State: closed - Opened by jeizenga almost 2 years ago - 1 comment

#35 - About the latest release

Issue - State: closed - Opened by chenrui333 almost 2 years ago - 1 comment

#34 - Segmentation fault (core dumped) - 10 million sequence dataset

Issue - State: closed - Opened by Shubhangi1397 about 2 years ago - 5 comments

#33 - Library and Public Headers

Issue - State: closed - Opened by Robin-Rounthwaite over 2 years ago - 14 comments

#32 - trouble in installing

Issue - State: closed - Opened by huawen-poppy over 2 years ago - 4 comments

#31 - Substitution Matrix

Issue - State: open - Opened by tanas80 over 2 years ago

#30 - Segmentation fault for large datasets

Issue - State: closed - Opened by Shubhangi1397 over 2 years ago - 7 comments

#29 - how to adjust the penalty parameter

Issue - State: closed - Opened by huangnengCSU almost 3 years ago - 1 comment

#28 - number of threads

Issue - State: closed - Opened by ardy20 about 3 years ago - 2 comments

#27 - Issue with installation using make

Issue - State: closed - Opened by mtva0001 about 3 years ago - 2 comments

#26 - Print log in stderr

Issue - State: closed - Opened by apcamargo over 3 years ago - 1 comment

#25 - Is the old "bonus score" still available in version 3?

Issue - State: closed - Opened by biomadeira over 3 years ago - 10 comments

#24 - Choose the number of threads

Issue - State: closed - Opened by ATVincent over 3 years ago - 1 comment

#23 - using muti-thread

Issue - State: closed - Opened by yxhmjl about 4 years ago - 3 comments

#22 - WARNING: AVX2 instruction set not found! When it is available

Issue - State: closed - Opened by vmkalbskopf over 4 years ago - 1 comment

#21 - tagged releases for 2.3.4 and 2.3.5

Issue - State: closed - Opened by mr-c over 4 years ago - 2 comments

#20 - Enable building on non-x86 architectures

Pull Request - State: closed - Opened by mr-c over 4 years ago - 7 comments

#19 - Don't discard the provided CFLAGS

Pull Request - State: closed - Opened by mr-c over 4 years ago

#18 - Add check for linux-specific constant

Pull Request - State: closed - Opened by davebx over 4 years ago - 3 comments

#17 - difficulties for calling kalign from inside a C program

Issue - State: closed - Opened by flandrs over 4 years ago - 1 comment

#16 - Error when linking on MacOS

Issue - State: closed - Opened by gperriere almost 5 years ago - 6 comments

#15 - Feature requests: exporting distance matrix & medoid sequence

Issue - State: closed - Opened by andreaswallberg almost 5 years ago - 1 comment

#14 - Cannot pass sequences via standard input to `kalign`.

Issue - State: closed - Opened by todddeluca almost 5 years ago - 5 comments