Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / MDU-PHL/meningotype issues and pull requests

#44 - Provide an option to not print the header on the output

Issue - State: open - Opened by pvanheus over 1 year ago

#41 - Updating DB outside of tool-installation directory should be possible

Issue - State: open - Opened by pvanheus over 1 year ago - 2 comments

#40 - Meningotype does not fail if any of the subprocesses it calls (isPcr, mlst) fail

Issue - State: closed - Opened by stroehleina over 1 year ago - 1 comment
Labels: bug

#39 - Update meningotype.py

Pull Request - State: open - Opened by boasvdp about 2 years ago

#38 - Mendevar

Pull Request - State: open - Opened by stroehleina about 2 years ago - 3 comments
Labels: enhancement

#37 - Meningotype seems to have trouble identifying FetA F5-1

Issue - State: open - Opened by boasvdp about 2 years ago - 1 comment

#36 - Need to add tests for updating DB

Issue - State: open - Opened by andersgs about 3 years ago

#35 - meningotype can not work

Issue - State: closed - Opened by chen1i6c04 about 3 years ago - 5 comments
Labels: help wanted

#34 - Kristy

Pull Request - State: closed - Opened by kristyhoran almost 5 years ago

#33 - Updates to Py3 upgrade

Pull Request - State: closed - Opened by schultzm about 5 years ago - 2 comments
Labels: help wanted

#32 - Adding other serotype E, cnl etc

Issue - State: closed - Opened by lexleong over 5 years ago - 2 comments
Labels: enhancement, help wanted

#31 - Updated installation instructions

Pull Request - State: closed - Opened by embatty about 6 years ago

#30 - Installing dependencies: homebrew/science is deprecated

Issue - State: closed - Opened by embatty about 6 years ago - 1 comment

#29 - Fixing incorrect exit code upon successful updating of the database.

Pull Request - State: closed - Opened by andersgs over 6 years ago

#28 - Migrate to Python 3

Issue - State: closed - Opened by tseemann over 6 years ago - 2 comments
Labels: enhancement

#27 - Needs some documentation on interpretation of output

Issue - State: open - Opened by andersgs about 7 years ago - 2 comments
Labels: enhancement, asks_too_many_questions

#26 - Not compatible with latest version of MLST

Issue - State: closed - Opened by andersgs about 7 years ago
Labels: bug

#25 - seroWY doesn't handle gaps

Issue - State: open - Opened by kwongj over 7 years ago
Labels: bug

#24 - Add capacity to perform cgMLST

Issue - State: open - Opened by kwongj over 7 years ago - 2 comments
Labels: enhancement

#23 - Add option for using multiple CPUs for BLAST

Issue - State: closed - Opened by kwongj over 7 years ago - 1 comment
Labels: enhancement

#22 - Add --checkdeps and check within application too?

Issue - State: closed - Opened by tseemann over 7 years ago
Labels: bug

#21 - Refactor code

Issue - State: open - Opened by tseemann over 7 years ago
Labels: enhancement

#20 - Consider combining all .fas files and do a single blast

Issue - State: open - Opened by tseemann over 7 years ago
Labels: enhancement, question

#19 - Add to bioconda

Issue - State: closed - Opened by tseemann over 7 years ago - 1 comment
Labels: enhancement

#18 - Add to homebrew/science

Issue - State: closed - Opened by tseemann over 7 years ago - 1 comment
Labels: enhancement

#17 - Start preparing for release on PyPi

Issue - State: closed - Opened by tseemann over 7 years ago - 1 comment
Labels: enhancement

#16 - Does --db need to be BLAST formatted?

Issue - State: closed - Opened by tseemann over 7 years ago - 1 comment
Labels: question

#15 - Make --version more standards compliant

Issue - State: closed - Opened by tseemann over 7 years ago - 1 comment
Labels: bug

#14 - Barf nicer on non-existent filename

Issue - State: closed - Opened by tseemann over 7 years ago
Labels: bug

#13 - --printseq should NOT write to folder in current directory

Issue - State: closed - Opened by tseemann over 7 years ago
Labels: bug, enhancement

#12 - Missing exact hits to PorA

Issue - State: closed - Opened by tseemann over 7 years ago - 5 comments
Labels: bug

#11 - Update Markdown docs to strict format

Issue - State: closed - Opened by tseemann over 7 years ago
Labels: bug

#10 - BLAST databases don't get updated with --updatedb

Issue - State: closed - Opened by kwongj over 7 years ago
Labels: bug

#9 - error in menwy.py with non-P/G/S amino acid in EX7E motif

Issue - State: closed - Opened by kwongj over 7 years ago - 1 comment

#8 - Check ctrA PCR

Issue - State: closed - Opened by kwongj over 7 years ago - 1 comment
Labels: enhancement

#7 - porB

Issue - State: closed - Opened by kwongj over 7 years ago - 1 comment
Labels: enhancement

#6 - User can't run --update if installed globally

Issue - State: closed - Opened by tseemann over 7 years ago - 1 comment
Labels: bug

#5 - incorrectly calls truncated alleles

Issue - State: closed - Opened by kwongj over 7 years ago - 1 comment
Labels: bug

#4 - Handle new Y+W serotype

Issue - State: closed - Opened by tseemann about 8 years ago - 1 comment
Labels: enhancement

#3 - Pip install fix2

Pull Request - State: closed - Opened by andersgs about 8 years ago

#2 - Pip install fix

Pull Request - State: closed - Opened by andersgs about 8 years ago

#1 - Pip install

Pull Request - State: closed - Opened by andersgs about 8 years ago - 1 comment