Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / LieberInstitute/spatialLIBD issues and pull requests
#89 - [BUG/Question] What's the layer annotation variable in the spe object?
Issue -
State: open - Opened by sluan-jh about 1 month ago
- 5 comments
Labels: bug-on-dependency
#89 - [BUG/Question] What's the layer annotation variable in the spe object?
Issue -
State: open - Opened by sluan-jh about 1 month ago
- 5 comments
Labels: bug-on-dependency
#88 - Read10x updates
Pull Request -
State: closed - Opened by Nick-Eagles about 1 month ago
#87 - [BUG] fetch_data(): Not all rnames found or unique
Issue -
State: closed - Opened by dimalvovs about 1 month ago
- 1 comment
Labels: duplicate
#86 - Registration wrapper k2
Pull Request -
State: closed - Opened by lahuuki about 2 months ago
- 1 comment
#85 - [BUG] fetch_data fails
Issue -
State: closed - Opened by stemangiola 2 months ago
- 2 comments
Labels: duplicate
#84 - [BUG] fetch data spe failed
Issue -
State: closed - Opened by hym97 3 months ago
- 4 comments
#84 - [BUG] fetch data spe failed
Issue -
State: closed - Opened by hym97 3 months ago
- 4 comments
#83 - [BUG] Reporting of Missing Genes in Spot Plots multi-gene functionality
Issue -
State: closed - Opened by cyntsc 4 months ago
- 2 comments
#82 - Stitched plotting
Pull Request -
State: closed - Opened by lcolladotor 5 months ago
#82 - Stitched plotting
Pull Request -
State: closed - Opened by lcolladotor 5 months ago
#81 - [Feature Request] Host Visium LS data through `fetch_data()`
Issue -
State: closed - Opened by Nick-Eagles 5 months ago
#81 - [Feature Request] Host Visium LS data through `fetch_data()`
Issue -
State: closed - Opened by Nick-Eagles 5 months ago
#80 - [BUG] vis_grid_clus cannot handle logical variables
Issue -
State: closed - Opened by lahuuki 5 months ago
- 1 comment
#80 - [BUG] vis_grid_clus cannot handle logical variables
Issue -
State: closed - Opened by lahuuki 5 months ago
- 1 comment
#79 - [BUG] Fail to obtain the spe data of DLPFC
Issue -
State: closed - Opened by YikaiLou 6 months ago
- 5 comments
Labels: bug-on-dependency
#79 - [BUG] Fail to obtain the spe data of DLPFC
Issue -
State: closed - Opened by YikaiLou 6 months ago
- 5 comments
Labels: bug-on-dependency
#78 - Add metric QC function
Pull Request -
State: closed - Opened by lahuuki 6 months ago
#78 - Add metric QC function
Pull Request -
State: closed - Opened by lahuuki 6 months ago
#77 - [BUG] `sort_clusters` creates arbitary numeric seqences as legend labels in `vis_grid_clus` plots.
Issue -
State: closed - Opened by boyiguo1 7 months ago
- 1 comment
#77 - [BUG] `sort_clusters` creates arbitary numeric seqences as legend labels in `vis_grid_clus` plots.
Issue -
State: closed - Opened by boyiguo1 7 months ago
- 1 comment
#76 - upload multiple Visium samples to the spatialLIBD shiny app
Issue -
State: open - Opened by cathalgking 7 months ago
- 4 comments
Labels: waiting-for-response
#76 - upload multiple Visium samples to the spatialLIBD shiny app
Issue -
State: open - Opened by cathalgking 7 months ago
- 4 comments
Labels: waiting-for-response
#75 - shiny_updates issues
Issue -
State: closed - Opened by lcolladotor 8 months ago
- 4 comments
#75 - shiny_updates issues
Issue -
State: closed - Opened by lcolladotor 8 months ago
- 4 comments
#74 - Unable to deploy iSEE app to Shinyapps.io
Issue -
State: closed - Opened by RyAMiller 8 months ago
- 1 comment
#73 - Fail to obtain the spe data of DLPFC through fetch_data()
Issue -
State: closed - Opened by YSPeng1225 8 months ago
- 6 comments
Labels: duplicate
#73 - Fail to obtain the spe data of DLPFC through fetch_data()
Issue -
State: closed - Opened by YSPeng1225 8 months ago
- 6 comments
Labels: duplicate
#72 - [BUG] Error during extract and reformat enrichment results when using `registration_wrapper`
Issue -
State: open - Opened by boyiguo1 11 months ago
- 3 comments
Labels: bug
#72 - [BUG] Error during extract and reformat enrichment results when using `registration_wrapper`
Issue -
State: open - Opened by boyiguo1 11 months ago
- 3 comments
Labels: bug
#71 - Error in loading app locally
Issue -
State: closed - Opened by dimurali93 11 months ago
- 4 comments
#71 - Error in loading app locally
Issue -
State: closed - Opened by dimurali93 11 months ago
- 4 comments
#70 - Switch to using rlang and cli
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#70 - Switch to using rlang and cli
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#69 - Translate course and intro documentation to Spanish
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#69 - Translate course and intro documentation to Spanish
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#68 - Design a 2 day workshop / short course
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#68 - Design a 2 day workshop / short course
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#67 - Create video guide for spatialLIBD web applications
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#67 - Create video guide for spatialLIBD web applications
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#66 - Add support for inspecting colors to visual impairment + guide for choosing colors
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#66 - Add support for inspecting colors to visual impairment + guide for choosing colors
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#65 - Allow users to write custom shiny code for web applications
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#64 - Determine limits of dataset size that can be supported by shinyapps.io + document Amazon AWS deployment
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#64 - Determine limits of dataset size that can be supported by shinyapps.io + document Amazon AWS deployment
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#63 - Expand utilities for exploring spatial data
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#63 - Expand utilities for exploring spatial data
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#62 - Modularize interactive code
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#62 - Modularize interactive code
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#61 - Add support for non-Visium data and/or SpatialFeatureExperiment
Issue -
State: open - Opened by lcolladotor 12 months ago
- 3 comments
Labels: enhancement
#61 - Add support for non-Visium data and/or SpatialFeatureExperiment
Issue -
State: open - Opened by lcolladotor 12 months ago
- 3 comments
Labels: enhancement
#60 - Enhance frame limit detection
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#59 - Create guide for shinyapps.io deployment
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#59 - Create guide for shinyapps.io deployment
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#58 - Refactor guide for external datasets
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#58 - Refactor guide for external datasets
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#57 - Add support for dream by Gabriel Hoffman
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#57 - Add support for dream by Gabriel Hoffman
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#56 - Improve data access organization and documentation
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#56 - Improve data access organization and documentation
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#55 - Deposit published data on ExperimentHub
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#55 - Deposit published data on ExperimentHub
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#54 - Use ComplexHeatmap
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#54 - Use ComplexHeatmap
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#53 - Add support for visualizing stitched capture areas
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#53 - Add support for visualizing stitched capture areas
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#52 - Improve code coverage
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#52 - Improve code coverage
Issue -
State: open - Opened by lcolladotor 12 months ago
Labels: enhancement
#51 - [BUG] run_app() error in frame_limits in newer R version
Issue -
State: closed - Opened by erkinacar5 about 1 year ago
- 1 comment
#51 - [BUG] run_app() error in frame_limits in newer R version
Issue -
State: closed - Opened by erkinacar5 about 1 year ago
- 1 comment
#50 - [BUG] An error when using registration_wrapper().
Issue -
State: closed - Opened by GGFranck about 1 year ago
#50 - [BUG] An error when using registration_wrapper().
Issue -
State: closed - Opened by GGFranck about 1 year ago
#49 - [Feature Request] Enable Biocparallel-based execution of registration_wrapper steps
Issue -
State: closed - Opened by berniejmulvey over 1 year ago
- 3 comments
#49 - [Feature Request] Enable Biocparallel-based execution of registration_wrapper steps
Issue -
State: closed - Opened by berniejmulvey over 1 year ago
- 3 comments
#48 - [Feature Request] registration_wrapper(): create and check validity of eventual pseudobulk factor names before starting
Issue -
State: open - Opened by berniejmulvey over 1 year ago
- 3 comments
Labels: bug
#48 - [Feature Request] registration_wrapper(): create and check validity of eventual pseudobulk factor names before starting
Issue -
State: open - Opened by berniejmulvey over 1 year ago
- 3 comments
Labels: bug
#47 - [BUG] fetch_data(type = "spe") yields "Error: Other 'type' values are not supported."
Issue -
State: closed - Opened by george-hall-ucl over 1 year ago
- 1 comment
#46 - Add spatial registration vignette
Pull Request -
State: closed - Opened by lahuuki over 1 year ago
#46 - Add spatial registration vignette
Pull Request -
State: closed - Opened by lahuuki over 1 year ago
#45 - Want to download the full real data (spe) to use
Issue -
State: closed - Opened by zhang-TD over 1 year ago
- 1 comment
#45 - Want to download the full real data (spe) to use
Issue -
State: closed - Opened by zhang-TD over 1 year ago
- 1 comment
#44 - In gene_set_enrichment use alternative greater
Pull Request -
State: closed - Opened by lahuuki over 1 year ago
#44 - In gene_set_enrichment use alternative greater
Pull Request -
State: closed - Opened by lahuuki over 1 year ago
#43 - Color Blending for NA values in `vis_clus`
Issue -
State: closed - Opened by boyiguo1 almost 2 years ago
- 3 comments
#43 - Color Blending for NA values in `vis_clus`
Issue -
State: closed - Opened by boyiguo1 almost 2 years ago
- 3 comments
#42 - Update document of `sampleid` argument in viz_clus
Issue -
State: closed - Opened by boyiguo1 almost 2 years ago
- 2 comments
Labels: documentation
#42 - Update document of `sampleid` argument in viz_clus
Issue -
State: closed - Opened by boyiguo1 almost 2 years ago
- 2 comments
Labels: documentation
#41 - [BUG] Errors are shown when you select a gene for which there are no modeling results
Issue -
State: closed - Opened by lcolladotor over 2 years ago
#41 - [BUG] Errors are shown when you select a gene for which there are no modeling results
Issue -
State: closed - Opened by lcolladotor over 2 years ago
#40 - [BUG] Cannot resume manual annotation
Issue -
State: closed - Opened by lcolladotor over 2 years ago
- 2 comments
#40 - [BUG] Cannot resume manual annotation
Issue -
State: closed - Opened by lcolladotor over 2 years ago
- 2 comments
#39 - Trouble loading two gene sets
Issue -
State: closed - Opened by abspangler13 over 2 years ago
- 1 comment
#39 - Trouble loading two gene sets
Issue -
State: closed - Opened by abspangler13 over 2 years ago
- 1 comment
#38 - problem with read10xVisiumWrapper function
Issue -
State: closed - Opened by abspangler13 over 2 years ago
- 1 comment
#38 - problem with read10xVisiumWrapper function
Issue -
State: closed - Opened by abspangler13 over 2 years ago
- 1 comment
#37 - an error when use check_sce() function
Issue -
State: closed - Opened by SiyuanHuang1 over 2 years ago
- 6 comments
#36 - Rename SpatialImage to VirtualSpatialImage class
Pull Request -
State: closed - Opened by lmweber over 2 years ago
#36 - Rename SpatialImage to VirtualSpatialImage class
Pull Request -
State: closed - Opened by lmweber over 2 years ago
#35 - Error in BiocFileCache::bfcrpath(bfc, url)
Issue -
State: closed - Opened by SiyuanHuang1 over 2 years ago
- 3 comments
#35 - Error in BiocFileCache::bfcrpath(bfc, url)
Issue -
State: closed - Opened by SiyuanHuang1 over 2 years ago
- 3 comments