Ecosyste.ms: Issues

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GitHub / Knowledge-Graph-Hub/universalizer issues and pull requests

#37 - Remove `sssom` dependency and update for newer version

Pull Request - State: closed - Opened by caufieldjh 12 months ago - 1 comment

#36 - Fix sssom-py pin

Issue - State: closed - Opened by caufieldjh 12 months ago

#35 - Fix for KeyError when checking existing category assignments

Pull Request - State: closed - Opened by caufieldjh over 1 year ago

#34 - KeyError due to node IDs missing from `update_cats` dict

Issue - State: closed - Opened by caufieldjh over 1 year ago

#33 - Fix for #32

Pull Request - State: closed - Opened by caufieldjh over 1 year ago

#31 - Fix for node categories getting overwritten by those defined by edges

Pull Request - State: closed - Opened by caufieldjh over 1 year ago

#30 - Bump dependencies and version

Pull Request - State: closed - Opened by caufieldjh over 1 year ago

#29 - Relax kgx constraints, now that the current version is above 2.0

Pull Request - State: closed - Opened by kevinschaper over 1 year ago - 1 comment

#28 - Refresh and update dependencies

Pull Request - State: closed - Opened by caufieldjh over 1 year ago

#27 - Repair removal of category edges

Pull Request - State: closed - Opened by caufieldjh over 1 year ago

#26 - Category edges persist, with incorrect objects

Issue - State: closed - Opened by caufieldjh almost 2 years ago - 2 comments

#25 - Fix an issue with assigning categories to some ids

Pull Request - State: closed - Opened by caufieldjh about 2 years ago

#24 - Add function to parse namespace-based category maps

Pull Request - State: closed - Opened by caufieldjh about 2 years ago

#23 - Default argument parsing isn't working correctly

Issue - State: open - Opened by caufieldjh about 2 years ago

#22 - Fix for #21

Pull Request - State: closed - Opened by caufieldjh about 2 years ago

#21 - Error on checking for list of edges to remove

Issue - State: closed - Opened by caufieldjh about 2 years ago

#20 - Fix for IndexError on search for STY IRI

Pull Request - State: closed - Opened by caufieldjh about 2 years ago - 1 comment

#19 - IndexError on checking for STY category

Issue - State: closed - Opened by caufieldjh about 2 years ago

#18 - Fix for category remapping

Pull Request - State: closed - Opened by caufieldjh about 2 years ago

#17 - ID remapped nodes don't get category remapped

Issue - State: closed - Opened by caufieldjh about 2 years ago

#16 - Updates to handle Bioportal normalization

Pull Request - State: closed - Opened by caufieldjh about 2 years ago

#15 - Black formatting

Pull Request - State: closed - Opened by caufieldjh about 2 years ago

#14 - Consider blackening this project

Issue - State: closed - Opened by cthoyt about 2 years ago - 1 comment

#13 - Some OBO IDs are parsed incorrectly

Issue - State: closed - Opened by caufieldjh about 2 years ago - 2 comments

#12 - Update process for parsing UMLS semantic type category assignments

Pull Request - State: closed - Opened by caufieldjh about 2 years ago

#11 - Fixes for better performance

Pull Request - State: closed - Opened by caufieldjh about 2 years ago

#9 - Duplication of functionality of Bioregistry

Issue - State: open - Opened by cthoyt about 2 years ago - 2 comments

#8 - Auto-update SSSOM maps

Issue - State: open - Opened by caufieldjh about 2 years ago - 1 comment
Labels: enhancement

#7 - Check for existence of conflicting category assignments

Issue - State: open - Opened by caufieldjh about 2 years ago - 2 comments

#6 - Update and normalize Biolink categories

Pull Request - State: closed - Opened by caufieldjh about 2 years ago

#5 - Add more Biolink category checks

Issue - State: closed - Opened by caufieldjh about 2 years ago - 2 comments

#4 - Accept SSSOM map input for node ID and category remapping

Pull Request - State: closed - Opened by caufieldjh about 2 years ago

#3 - Prefix normalization, and related additions

Pull Request - State: closed - Opened by caufieldjh about 2 years ago

#2 - Implement prefix normalization

Issue - State: closed - Opened by caufieldjh about 2 years ago - 1 comment
Labels: enhancement

#1 - Provide option to accept SSSOM map as input

Issue - State: closed - Opened by caufieldjh about 2 years ago - 2 comments
Labels: enhancement