Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / HadrienG/taxadb issues and pull requests
#101 - Bump certifi from 2019.6.16 to 2022.12.7
Pull Request -
State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies
#100 - CVE-2007-4559 Patch
Pull Request -
State: open - Opened by TrellixVulnTeam about 2 years ago
#99 - Bump codecov from 2.0.15 to 2.0.16
Pull Request -
State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies
#98 - Taxadb is not being maintained anymore
Issue -
State: open - Opened by HadrienG over 3 years ago
- 1 comment
#97 - Bump urllib3 from 1.25.3 to 1.25.8
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
- 1 comment
Labels: dependencies
#96 - ERROR:parser:File taxadb/nucl_gb.accession2taxid.gz does not exist
Issue -
State: open - Opened by jorvis over 4 years ago
- 1 comment
#95 - Bump tqdm from 4.33.0 to 4.47.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 4 years ago
Labels: dependencies
#94 - Bump requests from 2.22.0 to 2.24.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 4 years ago
Labels: dependencies
#93 - Bump codecov from 2.0.15 to 2.1.7
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 4 years ago
- 1 comment
Labels: dependencies
#92 - Bump tqdm from 4.33.0 to 4.46.1
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 4 years ago
- 1 comment
Labels: dependencies
#91 - Bump codecov from 2.0.15 to 2.1.4
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 4 years ago
- 2 comments
Labels: dependencies
#90 - Fix bug in taxadb/taxid.py line 107
Pull Request -
State: closed - Opened by DrAntoine over 4 years ago
#89 - Bump codecov from 2.0.15 to 2.1.3
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 4 years ago
- 2 comments
Labels: dependencies
#88 - Bump codecov from 2.0.15 to 2.1.1
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 4 years ago
- 2 comments
Labels: dependencies
#87 - Bump codecov from 2.0.15 to 2.1.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 4 years ago
- 2 comments
Labels: dependencies
#86 - Add explicit commit statements
Pull Request -
State: open - Opened by bosborne over 4 years ago
- 1 comment
#85 - Accession loading issue
Issue -
State: open - Opened by bosborne over 4 years ago
- 3 comments
#84 - Error creating database
Issue -
State: open - Opened by ngilber3 over 4 years ago
- 1 comment
#83 - Bump tqdm from 4.33.0 to 4.46.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 4 years ago
- 2 comments
Labels: dependencies
#82 - Bump peewee from 3.10.0 to 3.13.3
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 4 years ago
Labels: dependencies
#81 - SQLite DB generated by TaxaDB must be stored in writable directories
Issue -
State: open - Opened by tbigot over 4 years ago
- 2 comments
#80 - Bump tqdm from 4.33.0 to 4.45.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 4 years ago
- 2 comments
Labels: dependencies
#79 - Bump tqdm from 4.33.0 to 4.44.1
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 4 years ago
- 1 comment
Labels: dependencies
#78 - Bump peewee from 3.10.0 to 3.13.2
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 4 years ago
- 1 comment
Labels: dependencies
#77 - Bump codecov from 2.0.15 to 2.0.22
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 4 years ago
- 2 comments
Labels: dependencies
#76 - Bump codecov from 2.0.15 to 2.0.21
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 4 years ago
- 2 comments
Labels: dependencies
#75 - Bump codecov from 2.0.15 to 2.0.16
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 4 years ago
- 2 comments
Labels: dependencies
#74 - Bump tqdm from 4.33.0 to 4.43.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 5 years ago
- 2 comments
Labels: dependencies
#73 - Bump requests from 2.22.0 to 2.23.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 5 years ago
- 2 comments
Labels: dependencies
#72 - Bump tqdm from 4.33.0 to 4.42.1
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 5 years ago
- 2 comments
Labels: dependencies
#71 - Bump tqdm from 4.33.0 to 4.42.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 5 years ago
- 2 comments
Labels: dependencies
#70 - Ranks=True - NameError: name 'current_lineage_id' is not defined
Issue -
State: closed - Opened by BenjaminGuinet almost 5 years ago
- 2 comments
Labels: bug
#69 - Bump tqdm from 4.33.0 to 4.41.1
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 5 years ago
- 2 comments
Labels: dependencies
#68 - Bump tqdm from 4.33.0 to 4.41.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 5 years ago
- 2 comments
Labels: dependencies
#67 - Problems building/querying database: Can't create database object: 'None' not supported
Issue -
State: closed - Opened by nextgenusfs almost 5 years ago
- 2 comments
#66 - Bump tqdm from 4.33.0 to 4.40.2
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 5 years ago
- 2 comments
Labels: dependencies
#65 - Bump peewee from 3.10.0 to 3.13.1
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 5 years ago
- 2 comments
Labels: dependencies
#64 - Bump tqdm from 4.33.0 to 4.40.1
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 5 years ago
- 2 comments
Labels: dependencies
#63 - Bump peewee from 3.10.0 to 3.13.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 5 years ago
- 2 comments
Labels: dependencies
#62 - Bump tqdm from 4.33.0 to 4.40.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 5 years ago
- 2 comments
Labels: dependencies
#61 - Bump peewee from 3.10.0 to 3.12.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 5 years ago
- 2 comments
Labels: dependencies
#60 - Bump tqdm from 4.33.0 to 4.39.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 5 years ago
- 2 comments
Labels: dependencies
#59 - Bump tqdm from 4.33.0 to 4.38.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] about 5 years ago
- 2 comments
Labels: dependencies
#58 - Bump tqdm from 4.33.0 to 4.37.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] about 5 years ago
- 2 comments
Labels: dependencies
#57 - Change default section to DBSETTINGS in taxadb.ini.example
Pull Request -
State: open - Opened by christiam about 5 years ago
- 1 comment
#56 - Bump peewee from 3.10.0 to 3.11.2
Pull Request -
State: closed - Opened by dependabot-preview[bot] about 5 years ago
- 2 comments
Labels: dependencies
#55 - Bump peewee from 3.10.0 to 3.11.1
Pull Request -
State: closed - Opened by dependabot-preview[bot] about 5 years ago
- 2 comments
Labels: dependencies
#54 - Bump peewee from 3.10.0 to 3.11.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] about 5 years ago
- 2 comments
Labels: dependencies
#53 - Bump tqdm from 4.33.0 to 4.36.1
Pull Request -
State: closed - Opened by dependabot-preview[bot] about 5 years ago
- 2 comments
Labels: dependencies
#52 - Bump tqdm from 4.33.0 to 4.36.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] about 5 years ago
- 2 comments
Labels: dependencies
#51 - Bump tqdm from 4.33.0 to 4.35.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] about 5 years ago
- 1 comment
Labels: dependencies
#50 - Bump tqdm from 4.33.0 to 4.34.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 5 years ago
- 2 comments
Labels: dependencies
#49 - Bump tqdm from 4.32.2 to 4.33.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 5 years ago
- 1 comment
Labels: dependencies
#48 - 0.12.0
Pull Request -
State: closed - Opened by HadrienG over 5 years ago
- 1 comment
#47 - Bump peewee from 3.8.2 to 3.10.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 5 years ago
- 1 comment
Labels: dependencies
#46 - no rank issue
Issue -
State: closed - Opened by alienzj over 5 years ago
- 3 comments
Labels: bug
#45 - Bump tqdm from 4.30.0 to 4.32.2
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 5 years ago
- 1 comment
Labels: dependencies
#44 - "taxadb query -h" has no useful help?
Issue -
State: closed - Opened by tseemann over 5 years ago
- 1 comment
Labels: documentation
#43 - Bump peewee from 3.8.2 to 3.9.6
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 5 years ago
- 2 comments
Labels: dependencies
#42 - Bump requests from 2.21.0 to 2.22.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 5 years ago
- 1 comment
Labels: dependencies
#41 - Bump tqdm from 4.30.0 to 4.32.1
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 5 years ago
- 2 comments
Labels: dependencies
#40 - Bump peewee from 3.8.2 to 3.9.5
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 5 years ago
- 2 comments
Labels: dependencies
#39 - New ncbi structure
Issue -
State: closed - Opened by HadrienG over 5 years ago
Labels: bug
#38 - [Security] Bump urllib3 from 1.24.1 to 1.24.2
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 5 years ago
- 1 comment
Labels: dependencies, security
#37 - Bump peewee from 2.8.1 to 3.9.4
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 5 years ago
- 2 comments
Labels: dependencies
#36 - Bump peewee from 2.8.1 to 3.9.3
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 5 years ago
- 2 comments
Labels: dependencies
#35 - Bump peewee from 2.8.1 to 3.9.2
Pull Request -
State: closed - Opened by dependabot-preview[bot] over 5 years ago
- 2 comments
Labels: dependencies
#34 - Too many accession entries
Issue -
State: closed - Opened by StromTroopers over 5 years ago
#33 - Bump tqdm from 4.29.1 to 4.31.1
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 6 years ago
- 2 comments
Labels: dependencies
#32 - Bump tqdm from 4.29.1 to 4.30.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 6 years ago
- 2 comments
Labels: dependencies
#31 - 0.10.0
Pull Request -
State: closed - Opened by HadrienG almost 6 years ago
- 1 comment
#30 - Table taxa does not exist
Issue -
State: open - Opened by treitpeter almost 6 years ago
- 2 comments
Labels: bug, on hold
#29 - Bump peewee from 2.8.1 to 3.8.2
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 6 years ago
- 1 comment
Labels: dependencies
#28 - Bump tqdm from 4.25.0 to 4.29.1
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 6 years ago
- 1 comment
Labels: dependencies
#27 - [Security] Bump requests from 2.19.1 to 2.21.0
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 6 years ago
- 1 comment
Labels: dependencies, security
#26 - Bump peewee from 2.8.1 to 3.8.1
Pull Request -
State: closed - Opened by dependabot-preview[bot] almost 6 years ago
- 2 comments
Labels: dependencies
#25 - Lineage
Pull Request -
State: closed - Opened by HadrienG about 6 years ago
- 1 comment
#24 - Improved progress status output would be helpful
Issue -
State: closed - Opened by jorvis about 6 years ago
- 7 comments
#23 - From taxid to accession number
Issue -
State: closed - Opened by aghozlane over 6 years ago
#22 - Lineage levels
Issue -
State: closed - Opened by HadrienG over 6 years ago
Labels: enhancement
#21 - Concurrent access to one db
Issue -
State: open - Opened by tbigot over 6 years ago
- 3 comments
Labels: performance
#20 - scientific name to taxid
Pull Request -
State: closed - Opened by HadrienG over 6 years ago
- 1 comment
#19 - Allow taxa names as input to obtain the corresponding taxa id
Issue -
State: closed - Opened by RVanDamme over 6 years ago
- 2 comments
Labels: enhancement
#18 - 0.7.0
Pull Request -
State: closed - Opened by HadrienG over 6 years ago
- 1 comment
#17 - Fix sqlite dbname in docs
Pull Request -
State: closed - Opened by Erotemic over 6 years ago
- 2 comments
#16 - Failure to build sqlite3 database
Issue -
State: closed - Opened by Erotemic over 6 years ago
- 1 comment
Labels: documentation
#15 - Select files to download
Issue -
State: closed - Opened by HadrienG over 6 years ago
Labels: enhancement
#14 - URLs broken for SQLite3 databases
Issue -
State: closed - Opened by jorvis about 7 years ago
- 1 comment
#13 - Current DB proposed for download won’t work with current version
Issue -
State: closed - Opened by tbigot over 7 years ago
- 13 comments
#12 - Small updates :)
Pull Request -
State: closed - Opened by horkko over 7 years ago
- 1 comment
#11 - ERROR: (2014, 'Command Out of Sync') with MySQL
Issue -
State: closed - Opened by HadrienG over 7 years ago
- 1 comment
Labels: bug
#10 - Slow db creation
Issue -
State: closed - Opened by HadrienG over 7 years ago
- 13 comments
Labels: enhancement
#9 - Update documentation
Pull Request -
State: closed - Opened by HadrienG over 7 years ago
- 4 comments
#6 - Object implementation for taxadb
Pull Request -
State: closed - Opened by horkko over 7 years ago
- 17 comments
#5 - Shouldn’t accessions table be merged in a unique one?
Issue -
State: closed - Opened by tbigot almost 8 years ago
- 2 comments
Labels: enhancement
#4 - `too many SQL variables` occurs
Issue -
State: closed - Opened by tbigot almost 8 years ago
- 6 comments
Labels: bug
#3 - Support for PostgreSQL and database driver creation wrapped
Pull Request -
State: closed - Opened by horkko almost 8 years ago
- 7 comments
#2 - Add error message when md5 doesn't match
Issue -
State: closed - Opened by HadrienG almost 8 years ago
Labels: enhancement