EnvironmentOntology/envo issues and pull requests

#1462 - Following biome DOS-DP pattern verbatim creates some asserted equivalent classes

Issue - State: closed - Opened by turbomam about 1 year ago - 2 comments

#1461 - Revise axioms for biome terms with asserted subclassing or equivalent classing with 'biome'

Issue - State: open - Opened by turbomam about 1 year ago - 1 comment

#1460 - Classify a 'desert biome' as a 'terrestrial biome'

Issue - State: open - Opened by turbomam about 1 year ago - 2 comments

#1459 - add biome 'part of' 'climactic ecological succession' axioms for better inferred hierarchy

Pull Request - State: closed - Opened by turbomam about 1 year ago - 12 comments

#1458 - Additional participates in some climactic ecosystem succession axioms

Issue - State: closed - Opened by turbomam about 1 year ago

#1457 - SPARQL for misclassified biomes

Pull Request - State: closed - Opened by turbomam about 1 year ago

#1455 - Switch NCBITAXON and CHEBI to slims

Pull Request - State: closed - Opened by matentzn about 1 year ago - 2 comments

#1454 - Review GitHub merge/rebase options

Issue - State: closed - Opened by cmungall about 1 year ago - 3 comments

#1453 - Consolidate biome issues

Issue - State: closed - Opened by pbuttigieg about 1 year ago - 4 comments
Labels: enhancement, axiomatization

#1452 - renormalizing to latest owlapi

Pull Request - State: closed - Opened by cmungall about 1 year ago - 2 comments

#1451 - Alicia's stream parts with revisions by PLB

Pull Request - State: closed - Opened by turbomam about 1 year ago - 1 comment

#1450 - Proposal: obsolete 'alga'

Pull Request - State: closed - Opened by hrshdhgd about 1 year ago - 4 comments
Labels: Automated

#1449 - Add DOSDP QC

Pull Request - State: closed - Opened by matentzn about 1 year ago

#1448 - Proposal: obsolete 'alga'

Issue - State: closed - Opened by kgcl-change-request about 1 year ago

#1447 - Remove legacy synonyms on ice sheet

Pull Request - State: closed - Opened by hrshdhgd about 1 year ago - 1 comment
Labels: Automated

#1446 - Remove legacy synonyms on ice sheet

Issue - State: closed - Opened by hrshdhgd about 1 year ago

#1445 - Addressing #865 with desert biome example

Pull Request - State: closed - Opened by pbuttigieg about 1 year ago - 1 comment
Labels: enhancement, axiomatization, MIxS

#1444 - create replacement process class

Issue - State: open - Opened by turbomam about 1 year ago

#1443 - Implement `ontobot-change-agent` as a GitHub action workflow

Pull Request - State: closed - Opened by hrshdhgd about 1 year ago

#1442 - clean pr with Alicia's terms, using recent robot

Pull Request - State: closed - Opened by turbomam about 1 year ago

#1441 - Created new term geological formation process

Pull Request - State: closed - Opened by cmungall about 1 year ago - 1 comment

#1440 - update envo-edit.owl to include ARMS related classes

Pull Request - State: closed - Opened by cpavloud about 1 year ago - 4 comments

#1439 - Fixed logical def for animal environment. Fixes #1435

Pull Request - State: closed - Opened by cmungall about 1 year ago

#1438 - Smaller NMDC id range... remainder for Mark and Alicia

Pull Request - State: closed - Opened by turbomam about 1 year ago

#1437 - shrink NMDC's id reservations and split the rest of the range between Mark A Miller and Alicia Clum

Issue - State: closed - Opened by turbomam about 1 year ago

#1436 - normalized envo-edit. Fixes #1428.

Pull Request - State: closed - Opened by cmungall about 1 year ago

#1435 - ENVO:01001055’s logical definition is incompatible with Uberon

Issue - State: closed - Opened by gouttegd about 1 year ago - 1 comment

#1434 - ENVO:03600093 artificial satellite

Pull Request - State: closed - Opened by turbomam about 1 year ago - 1 comment

#1433 - Stream part classes, in support of NMDC-NEON collaboration, via ROBOT template.

Pull Request - State: closed - Opened by aclum about 1 year ago - 2 comments

#1432 - Issue 1415 -add envo terms pertaining to streams

Pull Request - State: closed - Opened by aclum about 1 year ago

#1431 - Update CONTRIBUTING.md

Pull Request - State: closed - Opened by cmungall about 1 year ago

#1430 - pr 1390 cherry picked

Pull Request - State: closed - Opened by cmungall about 1 year ago - 2 comments

#1429 - fix minor typo

Pull Request - State: closed - Opened by omahs about 1 year ago - 1 comment

#1428 - [technical] Normalize edit.owl serialization to latest version of owlapi

Issue - State: closed - Opened by cmungall about 1 year ago - 1 comment

#1427 - ensure all artificial objects are asserted to be outputs of human construction

Issue - State: open - Opened by cmungall about 1 year ago

#1426 - extend energy transfer process participancy to include organisms

Issue - State: open - Opened by reality over 1 year ago - 3 comments

#1425 - Modifify containment relations to be location relations.

Pull Request - State: closed - Opened by cmungall over 1 year ago

#1424 - Either adopt or obsolete the RO system grouping

Issue - State: open - Opened by cmungall over 1 year ago - 1 comment

#1423 - Document consistent design patterns for use of overlaps relation for areas

Issue - State: open - Opened by cmungall over 1 year ago - 1 comment

#1422 - missing relationships for temperate broadleaf forest biome

Issue - State: open - Opened by cmungall over 1 year ago

#1421 - temperate mediterranean sea biome should be a subclass of temperate biome

Issue - State: open - Opened by cmungall over 1 year ago - 1 comment

#1420 - classification of swamps

Issue - State: open - Opened by cmungall over 1 year ago

#1419 - Add mappings to WMO

Issue - State: open - Opened by cmungall over 1 year ago

#1418 - replacing hasAlternativeId with hasDbXref for all non-ENVO literal CURIEs.

Pull Request - State: closed - Opened by cmungall over 1 year ago

#1417 - Change mapping predicate from oio:hasAlternativeId to either skos or oio:hasDbXref

Issue - State: closed - Opened by cmungall over 1 year ago - 1 comment

#1416 - Proposed ENVO simple layer

Issue - State: open - Opened by cmungall over 1 year ago - 5 comments

#1415 - Add terms related to streams

Issue - State: closed - Opened by aclum over 1 year ago - 13 comments

#1414 - Create sssom-qc.yml

Pull Request - State: closed - Opened by matentzn over 1 year ago

#1413 - ENVO needs to have a SSSOM validation GitHub action added

Issue - State: open - Opened by rduerr over 1 year ago - 1 comment

#1412 - Issue 1409 pull request

Pull Request - State: closed - Opened by rduerr over 1 year ago - 1 comment

#1411 - Relax logical definition of water ice, liquid water=>water.

Pull Request - State: closed - Opened by cmungall over 1 year ago

#1410 - logical definition of ice is wrong

Issue - State: closed - Opened by cmungall over 1 year ago

#1409 - Suggested revisions for ENVO-SWEET sssom file

Issue - State: open - Opened by cmungall over 1 year ago - 4 comments

#1408 - many classes incorrectly have the synonym "wetland", but "wetland ecosystem" doesn't have the synonym

Issue - State: open - Opened by cmungall over 1 year ago

#1407 - Align KnowWhereGraph event type terms with ENVO

Issue - State: open - Opened by cmungall over 1 year ago

#1406 - Analysis of usage of BFO by ENVO

Issue - State: open - Opened by cmungall over 1 year ago - 1 comment

#1405 - Avoid axiom injection: RO_0001000 is under ENVO_01003004

Issue - State: open - Opened by matentzn almost 2 years ago - 1 comment

#1404 - ENVO release 13.02.2023 (#1401)

Pull Request - State: closed - Opened by matentzn almost 2 years ago

#1403 - Fix hours of sunshine

Pull Request - State: closed - Opened by matentzn almost 2 years ago

#1402 - NTR: autonomous reef monitoring structures (arms)

Issue - State: closed - Opened by cpavloud almost 2 years ago - 1 comment

#1401 - DO NOT MERGE. debugging only

Pull Request - State: closed - Opened by matentzn almost 2 years ago - 5 comments

#1400 - Create January 2023 release

Issue - State: closed - Opened by matentzn almost 2 years ago - 1 comment

#1399 - NTRs including fumes, noises, and solders

Issue - State: open - Opened by laurenechan almost 2 years ago - 5 comments

#1398 - Pattern error on CHEBI pesticide role

Issue - State: open - Opened by pbuttigieg almost 2 years ago - 4 comments
Labels: axiomatization

#1397 - First pass at SWEET-ENVO cryosphere SSSOM

Pull Request - State: closed - Opened by pbuttigieg almost 2 years ago - 3 comments
Labels: mapping

#1396 - Please add this ENVO/SWEET xls file to the mappings directory

Issue - State: closed - Opened by rduerr almost 2 years ago - 1 comment
Labels: enhancement, mapping, SWEET

#1395 - fix: add definition for sea ice mass

Pull Request - State: closed - Opened by wdduncan almost 2 years ago

#1394 - fix: change till plan to till plain

Pull Request - State: closed - Opened by wdduncan almost 2 years ago

#1393 - http://purl.obolibrary.org/obo/ENVO_00000254 label is mispelled - should be till plain instead of till plan

Issue - State: closed - Opened by rduerr almost 2 years ago - 2 comments

#1392 - http://purl.obolibrary.org/obo/ENVO_01001536 sea ice mass needs a definition

Issue - State: closed - Opened by rduerr almost 2 years ago - 1 comment

#1391 - multiple NTRs, closes #1367

Pull Request - State: closed - Opened by turbomam almost 2 years ago

#1390 - Issue 1251

Pull Request - State: closed - Opened by pbuttigieg almost 2 years ago - 4 comments
Labels: enhancement, axiomatization

#1389 - FOODON import cleanup

Issue - State: open - Opened by pbuttigieg almost 2 years ago - 2 comments
Labels: enhancement, axiomatization, possible domain conflict, FOODON