Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / DataBiosphere/terra-notebook-utils issues and pull requests

#417 - v0.15.0

Pull Request - State: closed - Opened by LizBaldo 2 months ago

#416 - Unpin bgzip upper bound

Pull Request - State: closed - Opened by almahmoud 3 months ago

#415 - v0.14.0

Pull Request - State: closed - Opened by tlangs 5 months ago

#414 - [ID-1311] Pass cloud platform when resolving a DRS URI

Pull Request - State: closed - Opened by samanehsan 6 months ago - 2 comments

#413 - ID-1207 Tell DRSHub its TNU a-knockin

Pull Request - State: closed - Opened by tlangs 7 months ago

#411 - ID-1146 Remove Martha and Bond References

Pull Request - State: closed - Opened by tlangs 11 months ago

#410 - Support verbose logging for diagnostic purposes

Issue - State: open - Opened by mbaumann-broad about 1 year ago
Labels: enhancement

#409 - Support TNU on macOS and Windows

Issue - State: open - Opened by mbaumann-broad about 1 year ago
Labels: enhancement

#408 - Update TNU readme re. TNU only being supported on Linux

Issue - State: open - Opened by mbaumann-broad about 1 year ago
Labels: documentation

#407 - v0.13.0

Pull Request - State: closed - Opened by tlangs over 1 year ago

#406 - ID-423 Let Terra Choose DRS Endpoint

Pull Request - State: closed - Opened by tlangs over 1 year ago - 1 comment

#405 - ID-376 Use DRSHub in Dev

Pull Request - State: closed - Opened by tlangs almost 2 years ago

#404 - Azure error if gcloud is not signed in.

Issue - State: open - Opened by DailyDreaming almost 2 years ago

#403 - Reliable identification of primary cloud

Issue - State: open - Opened by mbaumann-broad about 2 years ago

#402 - Only enable requester pays when necessary #400

Pull Request - State: closed - Opened by mbaumann-broad about 2 years ago

#401 - Enable TNU to use Azure auth for DRS operations #399

Pull Request - State: closed - Opened by mbaumann-broad about 2 years ago

#400 - Only enable requester pays when necessary

Issue - State: open - Opened by mbaumann-broad about 2 years ago

#399 - Enable TNU to use Azure auth for DRS operations

Issue - State: closed - Opened by mbaumann-broad about 2 years ago

#398 - [ID-323] Allow tnu to use either Martha or DRSHub to resolve DRS URIs

Pull Request - State: closed - Opened by Shakespeared about 2 years ago

#397 - [ID-323] Allow tnu to use either Martha or DRSHub to resolve DRS URIs

Pull Request - State: closed - Opened by Shakespeared about 2 years ago - 1 comment

#396 - Conda install with wheels

Issue - State: open - Opened by sjfleming over 2 years ago

#395 - Warn if invalid Martha URL.

Pull Request - State: closed - Opened by DailyDreaming over 2 years ago - 1 comment

#393 - Get rid of unnecessary info call.

Pull Request - State: closed - Opened by DailyDreaming over 2 years ago - 1 comment

#392 - Only request an access URL if using access, copy, or copy-batch.

Pull Request - State: closed - Opened by DailyDreaming over 2 years ago - 1 comment

#391 - The TNU drs info operation must not request the `accessUrl`

Issue - State: closed - Opened by mbaumann-broad over 2 years ago - 2 comments

#390 - Firecloud breaks python3.10.

Issue - State: open - Opened by DailyDreaming over 2 years ago

#389 - Update Iterable import.

Pull Request - State: closed - Opened by DailyDreaming over 2 years ago - 1 comment

#388 - Better error message and sanity check for signed URL generation.

Pull Request - State: closed - Opened by DailyDreaming over 2 years ago - 3 comments

#387 - Better error handling.

Pull Request - State: closed - Opened by DailyDreaming over 2 years ago

#386 - sometimes submission parts are not workflows since they lacked some i…

Pull Request - State: closed - Opened by yfarjoun almost 3 years ago - 1 comment

#385 - Errors in Terra from terra-notebook-utils-tests

Issue - State: closed - Opened by jordansafer almost 3 years ago - 4 comments

#384 - Check if bucket is empty string

Pull Request - State: closed - Opened by aofarrel almost 3 years ago - 1 comment

#383 - Make bucket first arg for list_bucket.

Pull Request - State: closed - Opened by DailyDreaming almost 3 years ago

#382 - Restore list_bucket()

Pull Request - State: closed - Opened by aofarrel almost 3 years ago

#381 - Make sure that drs access does not output newlines.

Pull Request - State: closed - Opened by DailyDreaming almost 3 years ago

#380 - Add pytz req.

Pull Request - State: closed - Opened by DailyDreaming almost 3 years ago

#379 - pytz import fails?

Issue - State: closed - Opened by DailyDreaming almost 3 years ago - 1 comment

#378 - Flaky test.

Issue - State: open - Opened by DailyDreaming almost 3 years ago

#377 - Bump gcloud reqs.

Pull Request - State: closed - Opened by DailyDreaming almost 3 years ago

#376 - Reorder copy_batch() parameters for backwards compatibility

Pull Request - State: closed - Opened by jessebrennan about 3 years ago

#375 - Stop extraneous logging for Notebook progress bar (#371)

Pull Request - State: closed - Opened by jessebrennan about 3 years ago

#374 - Restore old DRS copy_batch API; separate copy_batch with manifest

Pull Request - State: closed - Opened by jessebrennan about 3 years ago - 1 comment

#373 - Distinguish between WORKSPACE_NAMESPACE and GOOGLE_PROJECT

Pull Request - State: closed - Opened by jessebrennan about 3 years ago

#371 - Extraneous logging when using drs.copy API operations in Jupyter Notebook

Issue - State: closed - Opened by mbaumann-broad over 3 years ago - 2 comments
Labels: bug

#369 - TNU DRS operations fail in Terra project-per-workspace (PPW) workspaces (Urgent)

Issue - State: closed - Opened by mbaumann-broad over 3 years ago - 2 comments
Labels: bug

#368 - Update drs info to include all available hashes.

Pull Request - State: closed - Opened by DailyDreaming over 3 years ago - 1 comment

#367 - Better debug message.

Pull Request - State: closed - Opened by DailyDreaming over 3 years ago

#366 - Generate a signed url.

Pull Request - State: closed - Opened by DailyDreaming over 3 years ago - 1 comment

#365 - Remove make clean.

Pull Request - State: closed - Opened by DailyDreaming over 3 years ago - 1 comment

#364 - Use latest available workflow in workflow test

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#362 - IA-2932 Add upload to azure functionality

Pull Request - State: open - Opened by Qi77Qi over 3 years ago - 4 comments

#361 - Use new image for CI.

Pull Request - State: closed - Opened by DailyDreaming over 3 years ago

#360 - Resolve 'access_url' from DRS response

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#359 - Passthrough copies verify md5 sums

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#358 - Settable md5 property for URLBlob

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#357 - md5 property for GSBlob

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#356 - WIP Add upload to azure functionality

Pull Request - State: closed - Opened by Qi77Qi over 3 years ago - 2 comments

#355 - Test TNU in a Jupyter notebook on Terra

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#354 - Fix typos in dev_scripts/test_installed_cli.py

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#353 - Test that correct progress indicators obtain

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#352 - Remove unneeded imports

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#351 - Add IPython widget progress bars for notebooks

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#350 - Add CLI configuration for copy progress indicators

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#349 - Fix requester pays logging messages

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#348 - Split blobstore progress into separate module

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#347 - Update CLI config file data into defaults

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#346 - Rename 'Config' to 'CLIConfig'

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#345 - Consolidate loggers

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#344 - Avoid writing empty CLI config file

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#343 - Refactor drs.head for new blobstore abstractions

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#342 - Adjust error messages, reduce test specificity

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#341 - Fix type hint

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#340 - Move drs resolution during copy into background

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#339 - Improve copy target resolution

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#338 - Fix drs test_head

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#337 - Profile some tests in test_installed_cli.py

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#336 - Introduce local WDL test using Terra container

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#335 - Use manifest for batch copy, introduce CLI arg

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#334 - Lazily init fiss session to speed up startup

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#333 - Test the pip-installed CLI

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#332 - Output json-like data from table list-rows cli

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#331 - Fix example text in table put-row

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#330 - Profile module deserves its own tests

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#329 - Better CLI organization and entrypoint

Pull Request - State: closed - Opened by xbrianh over 3 years ago - 1 comment

#328 - Perform CLI tests simultaneously with python API

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#327 - Organize command modules into commands package

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#326 - Reorganize cli code

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#325 - Refator tar_gz for new blobstore

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#324 - Optionally create subdirs for local blob writes

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#323 - Remove old unused progress indicators.

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#322 - Use ordered part iterators and writers

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#321 - Use new blobstore code for VCF functionality

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#320 - Update DRS tests with new blobstore functionality

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#319 - Blob 'open' should return io.FileIO or equivalent

Pull Request - State: closed - Opened by xbrianh over 3 years ago

#318 - Optionally create local directories as needed for drs downloads

Issue - State: closed - Opened by xbrianh over 3 years ago - 1 comment