Ecosyste.ms: Issues

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GitHub / ComPath/ComPath issues and pull requests

#89 - Reorganize for Bio2BEL and PyBEL updates

Pull Request - State: open - Opened by cthoyt over 4 years ago - 1 comment

#88 - Unable to run `compath populate`

Issue - State: open - Opened by bigsuicideparty almost 5 years ago - 2 comments

#87 - Redundant pathway title on Pathway Detail page

Issue - State: closed - Opened by cthoyt over 6 years ago
Labels: enhancement

#86 - Improper capitalization in "Pathway Details" page

Issue - State: closed - Opened by cthoyt over 6 years ago - 1 comment
Labels: enhancement

#85 - Sort by "accepted" is broken

Issue - State: open - Opened by cthoyt over 6 years ago
Labels: bug

#84 - Release compath_utils new version

Issue - State: closed - Opened by ddomingof over 6 years ago

#83 - Should show 3 votes for all accepted mappings that you created

Issue - State: closed - Opened by cthoyt over 6 years ago - 1 comment
Labels: bug

#82 - DataTables CSV export is broken

Issue - State: open - Opened by cthoyt over 6 years ago - 1 comment
Labels: bug

#81 - 500 error when looking at "my activity"

Issue - State: closed - Opened by cthoyt over 6 years ago - 1 comment
Labels: bug

#80 - Mappings can be established both ways

Issue - State: closed - Opened by cthoyt over 6 years ago - 3 comments
Labels: bug

#79 - Improve feedback after establishing a mapping

Issue - State: closed - Opened by cthoyt over 6 years ago

#78 - Bug after creating a mapping black list plugins are included

Issue - State: closed - Opened by ddomingof over 6 years ago

#77 - Combine tables for WikiPathways, KEGG, and Reactome

Issue - State: open - Opened by cthoyt over 6 years ago
Labels: enhancement

#76 - Pathway distribution title below

Issue - State: closed - Opened by ddomingof over 6 years ago

#75 - Legend instead of description in query results

Issue - State: closed - Opened by ddomingof over 6 years ago
Labels: enhancement

#74 - Gene View

Issue - State: closed - Opened by ddomingof over 6 years ago

#73 - Delete mapping with admin powers

Issue - State: closed - Opened by ddomingof over 6 years ago
Labels: enhancement

#72 - Add export of gene set to pathway overlap view

Issue - State: closed - Opened by cthoyt over 6 years ago
Labels: enhancement

#71 - Put resource on left in pathway overlap form

Issue - State: closed - Opened by cthoyt over 6 years ago
Labels: enhancement

#70 - Give example pathway overlap in the text

Issue - State: closed - Opened by cthoyt over 6 years ago
Labels: enhancement

#69 - Suggestions for Pathway Similarity Network view

Issue - State: closed - Opened by cthoyt over 6 years ago - 1 comment
Labels: enhancement

#68 - Clustergrammar view doesn't fit

Issue - State: closed - Opened by cthoyt over 6 years ago - 4 comments
Labels: bug

#67 - Stylize resource names

Issue - State: closed - Opened by cthoyt over 6 years ago
Labels: enhancement

#66 - Show pathway distribution and gene promiscuity on same page

Issue - State: closed - Opened by cthoyt over 6 years ago
Labels: enhancement

#65 - Search Pathway Page

Issue - State: closed - Opened by ddomingof over 6 years ago - 1 comment

#64 - Contradiction view

Issue - State: closed - Opened by ddomingof over 6 years ago
Labels: enhancement

#63 - Extend RESTFul API

Issue - State: closed - Opened by ddomingof over 6 years ago

#62 - Color mappings edge in network

Issue - State: closed - Opened by ddomingof over 6 years ago

#61 - get_enriched_pathways manager compath utils

Issue - State: closed - Opened by ddomingof over 6 years ago

#59 - Export mappings to OBO/OWL

Issue - State: open - Opened by ddomingof over 6 years ago

#58 - Label in catalog

Issue - State: closed - Opened by ddomingof over 6 years ago

#57 - Add filtering option in cytoscape

Issue - State: open - Opened by ddomingof over 6 years ago - 1 comment

#56 - Mappings hierarchy overview

Issue - State: closed - Opened by ddomingof over 6 years ago
Labels: enhancement

#55 - Load mapping files directly from ComPath curation raw links

Issue - State: closed - Opened by ddomingof over 6 years ago

#54 - Make cmopath curation package

Issue - State: closed - Opened by ddomingof over 6 years ago

#53 - Infer a pathway's children

Issue - State: open - Opened by ddomingof over 6 years ago

#52 - Model rationale gene set parkinsosn

Issue - State: closed - Opened by ddomingof over 6 years ago

#51 - Suggest mapping overlap

Issue - State: closed - Opened by ddomingof over 6 years ago

#50 - Genes included in the pathway

Issue - State: closed - Opened by ddomingof over 6 years ago

#49 - Add example pathway enrichment

Issue - State: closed - Opened by ddomingof over 6 years ago

#48 - Fix documentation of all compath packages

Issue - State: closed - Opened by ddomingof over 6 years ago

#47 - PEP guidelines

Pull Request - State: closed - Opened by ddomingof over 6 years ago

#46 - Show histograms for each pathway resource in c3

Issue - State: closed - Opened by ddomingof over 6 years ago

#45 - Headers border Chrome

Issue - State: closed - Opened by ddomingof over 6 years ago - 1 comment

#44 - Adjust histogram views

Issue - State: closed - Opened by ddomingof over 6 years ago
Labels: bug, easy

#43 - Gene promiscuity (Histogram genes count pathways)

Issue - State: closed - Opened by ddomingof over 6 years ago

#42 - Test infer hierarchies

Issue - State: closed - Opened by ddomingof over 6 years ago

#41 - Mapping catalog show only equivalent/isPartOf

Issue - State: closed - Opened by ddomingof over 6 years ago

#40 - Check performance catalog

Issue - State: closed - Opened by ddomingof over 6 years ago

#39 - Add ComPath template

Issue - State: closed - Opened by ddomingof over 6 years ago

#38 - Handle logging curation

Issue - State: closed - Opened by ddomingof over 6 years ago

#37 - Automatically accepting mapping with X votes

Issue - State: closed - Opened by ddomingof over 6 years ago

#34 - Coverage in main page

Issue - State: closed - Opened by ddomingof over 6 years ago
Labels: enhancement, easy

#33 - Pathway neighborhood view

Issue - State: closed - Opened by ddomingof over 6 years ago
Labels: enhancement

#32 - Add Mapping relatinship

Issue - State: closed - Opened by ddomingof over 6 years ago

#31 - Reactome hierarchy mapped automatically

Issue - State: closed - Opened by ddomingof over 6 years ago

#30 - Download mappings button

Issue - State: closed - Opened by ddomingof over 6 years ago

#29 - Test/ Fix problem creating two mappings for different useres

Issue - State: closed - Opened by ddomingof over 6 years ago

#28 - Add metapathway table

Issue - State: closed - Opened by ddomingof over 6 years ago

#27 - Improve pathway page

Issue - State: closed - Opened by ddomingof over 6 years ago
Labels: enhancement, easy

#26 - Add parser to canonical mappings excel

Issue - State: closed - Opened by ddomingof over 6 years ago

#25 - Show in results genes without assigned pathway

Issue - State: closed - Opened by ddomingof over 6 years ago
Labels: enhancement

#24 - Add documentation d3_dendrogram

Issue - State: closed - Opened by ddomingof over 6 years ago

#23 - Test create_similarity_matrix

Issue - State: closed - Opened by ddomingof over 6 years ago

#22 - Select threshold and color clusters

Issue - State: closed - Opened by ddomingof over 6 years ago

#21 - Select all button not selecting hided table pagination

Issue - State: closed - Opened by ddomingof over 6 years ago

#20 - Button to cluster all pathways presented as a dendogram

Issue - State: closed - Opened by ddomingof over 6 years ago

#19 - sh script for load everything

Issue - State: closed - Opened by ddomingof over 6 years ago

#17 - Add tutorial with screenshot and videos

Issue - State: open - Opened by ddomingof over 6 years ago
Labels: good first issue

#16 - Add summary table to enrichment scores

Issue - State: closed - Opened by ddomingof over 6 years ago

#15 - Add datatables exporting options

Issue - State: closed - Opened by ddomingof over 6 years ago

#14 - Pathway enrichment p value calculations

Issue - State: closed - Opened by ddomingof over 6 years ago - 2 comments

#13 - Add link to NDEX

Issue - State: open - Opened by ddomingof over 6 years ago
Labels: wontfix

#12 - Add deployment info to about page

Issue - State: closed - Opened by ddomingof over 6 years ago

#11 - Add MANIFEST.in

Issue - State: closed - Opened by cthoyt almost 7 years ago

#10 - Add Logo

Issue - State: closed - Opened by ddomingof almost 7 years ago

#9 - Add manual mapping submission

Issue - State: closed - Opened by cthoyt almost 7 years ago

#8 - Add user feature

Issue - State: closed - Opened by ddomingof almost 7 years ago
Labels: enhancement

#7 - Write documentation about adding a new repo

Issue - State: closed - Opened by ddomingof almost 7 years ago

#6 - Loading repos with entry points

Issue - State: closed - Opened by ddomingof almost 7 years ago
Labels: enhancement

#5 - Add NeuroMMSig

Issue - State: closed - Opened by cthoyt almost 7 years ago
Labels: Resource

#4 - Add MSigDB

Issue - State: closed - Opened by cthoyt almost 7 years ago
Labels: Resource

#3 - Add WikiPathways

Issue - State: closed - Opened by cthoyt almost 7 years ago - 2 comments
Labels: Resource

#2 - Statistics

Issue - State: closed - Opened by ddomingof almost 7 years ago

#1 - Web use cases

Issue - State: closed - Opened by ddomingof almost 7 years ago - 1 comment