Ecosyste.ms: Issues

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GitHub / Bioconductor/GenomicAlignments issues and pull requests

#36 - summarizeOverlaps warnings

Issue - State: open - Opened by sunta3iouxos 29 days ago - 3 comments

#31 - When I use the readGAlignments .

Issue - State: closed - Opened by wangguiqian about 1 year ago - 2 comments

#30 - Differences in reads' base content with IGV.

Issue - State: closed - Opened by sfragkoul over 1 year ago - 2 comments

#29 - Fix mapFromAlignments() related to issue #12

Pull Request - State: open - Opened by gaoce over 1 year ago - 1 comment

#28 - Convert summarizeOverlaps.Rnw to summarizeOverlaps.Rmd

Pull Request - State: open - Opened by Rohit-Satyam over 1 year ago - 2 comments

#27 - Permission for SweaveToRmd

Issue - State: open - Opened by SunSummoner over 1 year ago - 9 comments

#26 - Addition of the strandMode parameter to readGAlignmentsList()

Pull Request - State: closed - Opened by rcastelo almost 2 years ago - 6 comments

#25 - Support for strandMode in GAlignmentsList objects

Pull Request - State: open - Opened by rcastelo almost 2 years ago - 9 comments

#24 - Converting OverlapEncodings Rnw file to Rmd

Pull Request - State: open - Opened by BerylKanali almost 2 years ago - 7 comments

#23 - 'cigar_buf' overflow ERROR when calling GenomicAlignments::cigarNarrow()

Issue - State: closed - Opened by daewoooo almost 2 years ago - 2 comments

#22 - Convert WorkingWithAlignedNucleotides from Rnw to Rmd

Pull Request - State: closed - Opened by Chisomgold about 2 years ago - 20 comments

#21 - WIP WorkingWorkingWithAlignedNucleotides.Rnw to Rmd

Pull Request - State: closed - Opened by raoulkam over 2 years ago - 1 comment

#20 - WIP GenomicAlignmentsIntroduction.Rnw to Rmd

Pull Request - State: closed - Opened by raoulkam over 2 years ago

#19 - cigarNarrow_segmentationFault

Issue - State: closed - Opened by daewoooo over 2 years ago - 3 comments

#18 - BiocParallel errors

Issue - State: closed - Opened by gevro over 2 years ago - 3 comments

#17 - reference to query location

Issue - State: closed - Opened by gevro over 2 years ago - 1 comment

#16 - summarizeOverlap performance issues and crashes.

Issue - State: closed - Opened by mgperry over 3 years ago - 7 comments

#15 - install error

Issue - State: closed - Opened by shiyi-pan about 4 years ago - 1 comment

#14 - S4Vectors

Issue - State: closed - Opened by jiangweixia about 4 years ago - 1 comment

#13 - Implementation of queryLoc2refLoc() function

Issue - State: closed - Opened by caspargross over 4 years ago - 2 comments

#12 - mapFromAlignments() and soft-clipping

Issue - State: open - Opened by hpages almost 5 years ago - 6 comments

#11 - readGAlignmentPairs causes Floating point exception (core dumped)

Issue - State: closed - Opened by jayoung almost 5 years ago - 21 comments

#10 - fail on r-devel

Issue - State: closed - Opened by alkodsi almost 5 years ago - 4 comments

#9 - add length test to Fix #8

Pull Request - State: closed - Opened by c-mertes over 5 years ago

#8 - summarizeJunctions with genome fails if no junction exists

Issue - State: closed - Opened by c-mertes over 5 years ago - 1 comment

#7 - Clarify Strandedness Options for SummarizeOverlaps in Documentation

Issue - State: open - Opened by groverj3 over 5 years ago - 1 comment

#6 - Clarify Counting of Query-Spanning Reads in Documentation

Issue - State: open - Opened by DarioS over 5 years ago

#5 - Non-graceful, when trying to access metadata column from GAlignment object

Issue - State: closed - Opened by FelixErnst over 5 years ago - 1 comment

#4 - Performance of readGAlignmentPairs with inter-chromosomal pairs

Issue - State: open - Opened by LTLA over 5 years ago

#3 - Error using granges with unused argument on.discordant.seqnames

Issue - State: open - Opened by sda910722 over 6 years ago - 1 comment

#1 - Strand-related warning in summarizeOverlaps() persists in some cases

Issue - State: closed - Opened by hpages over 6 years ago - 2 comments