Ecosyste.ms: Issues

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GitHub / Bioconductor/BiocFileCache issues and pull requests

#53 - Small fixes to documentation

Pull Request - State: closed - Opened by Shians 6 months ago - 2 comments

#52 - Failure to query bfc using url containing special characters

Issue - State: closed - Opened by Shians 6 months ago - 1 comment

#51 - overriding rpath filename when downloading

Issue - State: open - Opened by grlloyd 12 months ago - 3 comments

#50 - Explicitly name argument `n` in `collect()`

Pull Request - State: closed - Opened by mgirlich over 1 year ago - 2 comments

#49 - Reducing the number of package dependencies

Issue - State: closed - Opened by mjsteinbaugh over 1 year ago - 6 comments

#47 - Problem with remote files with whitespaces in the file name

Issue - State: closed - Opened by jorainer almost 2 years ago - 9 comments

#46 - Fix argument mismatch of generic to function for bfcupdate

Pull Request - State: closed - Opened by lshep about 2 years ago - 4 comments

#45 - Update BiocFileCache.Rmd

Pull Request - State: closed - Opened by federicomarini about 2 years ago

#44 - stale cached file not updated when calling `bfcupdate` with `rid`

Issue - State: closed - Opened by LiNk-NY about 2 years ago - 2 comments

#43 - Option no unique identifier

Pull Request - State: closed - Opened by lshep over 2 years ago - 2 comments

#42 - How to query and add atomically?

Issue - State: open - Opened by romanzenka over 2 years ago - 3 comments

#41 - Error in removebfc in an interactive session

Issue - State: closed - Opened by sdgamboa over 2 years ago - 1 comment

#40 - option for not having unique identifier

Issue - State: closed - Opened by lshep over 2 years ago - 8 comments
Labels: enhancement

#39 - Cannot lock file

Issue - State: closed - Opened by ZheFrench almost 3 years ago - 2 comments

#38 - bfcquery[['rpath']] is not the same as bfcrpath()

Issue - State: closed - Opened by LiNk-NY almost 3 years ago - 3 comments

#37 - Update remote file only when changed

Issue - State: closed - Opened by chrarnold almost 3 years ago - 10 comments

#36 - set expiration date for web resource

Issue - State: open - Opened by LiNk-NY about 3 years ago - 2 comments

#35 - manual build of vignette fails

Issue - State: closed - Opened by vjcitn about 3 years ago - 1 comment

#34 - Add @LTLA solution for making bfcrpath thread-safe

Pull Request - State: closed - Opened by lshep about 3 years ago - 1 comment

#33 - bfcrpath is not thread-safe

Issue - State: closed - Opened by LTLA over 3 years ago

#32 - Avoid loading in the entire DB on various queries.

Pull Request - State: closed - Opened by LTLA over 3 years ago - 1 comment

#31 - cleanbfc uses wrong format strings

Issue - State: closed - Opened by LTLA almost 4 years ago

#29 - tools::R_user_dir vs rappdirs::user_cache_dir

Issue - State: closed - Opened by lgeistlinger almost 4 years ago - 5 comments

#28 - Is BiocFileCache's directory structure "scratch-safe"?

Issue - State: closed - Opened by LTLA about 4 years ago - 2 comments

#27 - Added file locking for thread-safe SQL operations.

Pull Request - State: closed - Opened by LTLA over 4 years ago - 17 comments

#26 - bfcquery returns inconsistent column types for empty rows

Issue - State: open - Opened by omsai over 4 years ago - 2 comments

#25 - Mention use of days=-Inf to delete cache contents.

Pull Request - State: closed - Opened by LTLA almost 5 years ago - 2 comments

#24 - Wipe cache contents without destroying it

Issue - State: closed - Opened by LTLA almost 5 years ago - 2 comments

#23 - Deprecated dplyr functions cause check warnings

Issue - State: closed - Opened by tfkillian almost 5 years ago - 1 comment

#22 - avoid link 'does not exist' documentation error

Pull Request - State: closed - Opened by mtmorgan about 5 years ago - 4 comments

#21 - ask and report use of temporary cache once per session

Pull Request - State: closed - Opened by mtmorgan about 5 years ago

#20 - tests fail due to stats URL 404ing

Issue - State: closed - Opened by mr-c over 5 years ago - 2 comments

#19 - Add makeCachedActiveBinding()

Pull Request - State: closed - Opened by hpages over 5 years ago - 4 comments

#18 - `BiocFileCache()` inducing R abort

Issue - State: closed - Opened by robertamezquita over 5 years ago - 2 comments

#17 - file comparison only on Date will miss updates on edge case of same day updates

Issue - State: closed - Opened by lshep almost 6 years ago - 4 comments

#16 - prompt wraps poorly on macOS

Issue - State: open - Opened by mtmorgan almost 6 years ago - 1 comment

#15 - example(bfcmeta) can throw error

Issue - State: closed - Opened by vjcitn almost 6 years ago - 2 comments

#14 - bfcneedsupdate() fails when last_modified_time is NA

Issue - State: closed - Opened by Shians about 6 years ago - 7 comments

#13 - Disable progress bar in bfcrpath

Issue - State: closed - Opened by LTLA over 6 years ago - 3 comments

#12 - web file check

Issue - State: open - Opened by lshep over 6 years ago

#11 - bfcrpath seems to dislike URLs with odd characters

Issue - State: closed - Opened by LTLA over 6 years ago - 2 comments

#10 - rpath arguments should do exact matching

Issue - State: closed - Opened by lwaldron over 6 years ago - 2 comments

#9 - use `file.copy` instead of `file.rename`

Issue - State: open - Opened by LiNk-NY almost 7 years ago - 10 comments

#8 - Cached files should remember 'Expires' / 'Max-age' headers

Issue - State: closed - Opened by mtmorgan about 7 years ago - 1 comment

#7 - add 'ask=' to BiocFileCache

Pull Request - State: closed - Opened by mtmorgan about 7 years ago

#6 - Default path on Windows not usable

Issue - State: closed - Opened by FelixErnst about 7 years ago - 7 comments

#5 - Using file hash instead of last modified time to check for cached file

Issue - State: closed - Opened by lcougnaud about 7 years ago - 1 comment

#4 - Brainstorming: multiple cache locations handled like .libPaths()

Issue - State: closed - Opened by kevinrue about 7 years ago - 2 comments

#3 - Allow "pluggable" download option and update checking for remote resources

Issue - State: closed - Opened by seandavi over 7 years ago - 4 comments

#2 - Allow user-supplied rid?

Issue - State: closed - Opened by seandavi over 7 years ago - 1 comment

#1 - Keep file extensions

Issue - State: closed - Opened by lshep almost 8 years ago - 1 comment