AndersenLab/VCF-kit issues and pull requests

#48 - Can't install

Issue - State: open - Opened by boutrys 7 months ago

#47 - vcf2tsv cna't print header

Issue - State: open - Opened by huipan1973 8 months ago

#46 - problem with primer3 in both conda and docker

Issue - State: open - Opened by shanmugavadivelps 9 months ago

#45 - Running Docker version: "ModuleNotFoundError: No module named 'pomegranate'"

Issue - State: open - Opened by ariellerjohnson about 2 years ago

#44 - Cannot find thermo path '/primer3_config/

Issue - State: open - Opened by thomvesiri about 2 years ago

#43 - Muscle 5.1 no longer has "-maketree" command, breaking vk phylo

Issue - State: open - Opened by William-Gibson-ig over 2 years ago

#42 - Memory Issues when running tajima module

Issue - State: open - Opened by mwersebe over 2 years ago

#41 - Custom genome assembly?

Issue - State: open - Opened by BayLab over 2 years ago

#40 - TypeError: '<' not supported between instances of 'int' and 'NoneType'

Issue - State: open - Opened by selasphoruskershaw over 3 years ago

#39 - error while using docker image (andersenlab/vcf-kit:20200822175018b7b60d: TypeError: a bytes-like object is required, not 'str'

Issue - State: open - Opened by laura-bankers over 3 years ago - 1 comment

#38 - Warning --sample option not given

Issue - State: open - Opened by VivekTodur over 3 years ago

#37 - KeyError: b'AC' in Tajima'sD calculation

Issue - State: closed - Opened by mariesaitou over 3 years ago - 1 comment

#36 - fix biopython version

Pull Request - State: closed - Opened by samwachspress over 3 years ago

#35 - vk primer bio.alphabet error

Issue - State: closed - Opened by kimh11 almost 4 years ago - 3 comments

#34 - cannot get this to work

Issue - State: open - Opened by herber4 almost 4 years ago - 5 comments

#33 - got an KeyError with the tajima.py

Issue - State: closed - Opened by JieGao-XTBG almost 4 years ago - 1 comment

#32 - ImportError: No module named vcfkit

Issue - State: closed - Opened by vappiah almost 4 years ago - 4 comments

#31 - error loading tabix index for building a region specific tree

Issue - State: open - Opened by ccastane9 almost 4 years ago - 2 comments

#30 - TypeError Python 3

Issue - State: open - Opened by sofsta about 4 years ago - 2 comments

#29 - Make VCF-kit work with Python3

Pull Request - State: closed - Opened by danielecook over 4 years ago

#28 - calculate Tajima'D on haploid

Issue - State: open - Opened by AlexWanghaoming over 4 years ago - 2 comments

#27 - vcf2tsv error

Issue - State: closed - Opened by boboppie over 4 years ago - 1 comment

#26 - something wrong installing with anaconda

Issue - State: closed - Opened by Haoyuan17 over 4 years ago - 9 comments

#25 - Conda install error

Issue - State: open - Opened by danrlu over 4 years ago

#24 - Is it possible to plot the Tajima's D result?

Issue - State: closed - Opened by smallfishcui almost 5 years ago - 1 comment

#23 - ImportError: cannot import name 'lev' from 'utils' (/Applications/miniconda3/lib/python3.7/site-packages/utils/init.py)

Issue - State: closed - Opened by joswald almost 5 years ago - 4 comments

#22 - Exception due to misuse of numpy options

Issue - State: closed - Opened by aozalevsky over 5 years ago - 1 comment

#21 - The 'VCF-kit==0.1.6' distribution was not found and is required by the application

Issue - State: open - Opened by DallasThomas over 5 years ago - 2 comments

#20 - issue with primer3

Issue - State: closed - Opened by amykwebster about 6 years ago - 4 comments

#19 - phylogenetic tree

Issue - State: closed - Opened by vinay104 over 6 years ago - 2 comments

#18 - nothing to be generated

Issue - State: closed - Opened by DengHAU over 6 years ago - 1 comment

#17 - setup error

Issue - State: closed - Opened by oxidizer2001 over 6 years ago - 1 comment

#16 - vk error on RHEL7

Issue - State: closed - Opened by beechwood13 almost 7 years ago - 11 comments

#15 - issues installing vcf-kit on Mac

Issue - State: closed - Opened by seraphim711 almost 7 years ago - 1 comment

#14 - No reference strain in output alignment file?

Issue - State: closed - Opened by nghait almost 7 years ago - 3 comments

#13 - problems with PyFPE

Issue - State: open - Opened by lroma84 about 7 years ago - 2 comments

#12 - VK does not work with plink outputed VCF because the AC is empty

Issue - State: closed - Opened by andreyurch about 7 years ago - 2 comments

#11 - vk doesnot work on mac

Issue - State: closed - Opened by andreyurch about 7 years ago - 5 comments

#10 - vk setup errors

Issue - State: closed - Opened by mwhj about 7 years ago - 7 comments

#9 - vk calc syntax error

Issue - State: closed - Opened by asherichia over 7 years ago - 1 comment

#8 - Problem install VCF-kit

Issue - State: closed - Opened by CristianRiccio over 7 years ago - 1 comment

#7 - vk setup Error

Issue - State: closed - Opened by moko-moko over 7 years ago - 1 comment

#6 - pip install fail

Issue - State: closed - Opened by hoyonh almost 8 years ago - 36 comments

#5 - No module named cyvcf2

Issue - State: closed - Opened by nuin almost 8 years ago - 1 comment

#4 - vk phylo bug

Issue - State: closed - Opened by pthiru almost 8 years ago - 11 comments

#3 - Error parsing GATK produced VCFs

Issue - State: closed - Opened by nuin almost 8 years ago - 6 comments

#2 - Great

Issue - State: closed - Opened by danielecook about 8 years ago

#1 - Can I pip install this?

Issue - State: closed - Opened by tseemann about 8 years ago - 2 comments

GitHub / AndersenLab/VCF-kit issues and pull requests