Ecosyste.ms: Issues

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GitLab.com / dacs-hpi/covradar issues and pull requests

#151 - db update documentation

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#150 - Removed missing IDs

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#149 - Germany map #minor

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#148 - Resolve "add loading screen" #minor

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago
Labels: Dash/Flask, Doing-Website, priority: mid

#147 - merge Master into 95-add-loading-screen

Pull Request - State: merged - Opened by JakubBartoszewicz over 3 years ago

#146 - Germany map #minor

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#145 - Fixed wrong zip codes

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#144 - Updated reporting_lab_plz and sending_lab_plz to correct postal codes

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#143 - Update voc table

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#142 - Update LICENSE.md

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#141 - Germany map #minor

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#140 - right menu adapted, header of primary lab map changed

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#138 - Resolve "handle different sorting order of voc columns"

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago
Labels: Bug-Website

#137 - Change osf download

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#136 - Update gitlab login for deployment

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#135 - Added new rule to deploy to gitlab

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#134 - Fixed docker deployment

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#133 - Fixed docker deployment

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#132 - Fixed docker deployment

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#130 - Line profiler

Pull Request - State: merged - Opened by JakubBartoszewicz over 3 years ago

#129 - Merged demis and reporting_lab in metadata table

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#128 - Mobile start page

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#126 - Update variable for Docker deployment

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#125 - Update .gitlab-ci.yml to deploy to docker on scheduled times

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#124 - Update README.md

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#122 - Added code to remove repeated sequences from EBI

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#121 - Added script to create demis zip table #major

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#120 - Fixed version not shown on website through docker-compose

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#119 - Fixed bug in the rule vcf_modify and on the script create_config.py

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#118 - docker bugfix #minor

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#117 - Update virulign

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#116 - Disable creation of lab_id_zip table if file is not used as input

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#115 - version added #minor

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#114 - Added versioneer

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#113 - improved germany map and app layout

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#112 - Fixed apt-get error when connection fails

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#111 - Add tag denbi to build-test-image

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#110 - Update CONTRIBUTING.md and bump version #major

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#109 - frontend test db setup: add environmant variables MYSQL_DBgermany and...

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago
Labels: Doing-Website, priority: high

#108 - Add "automated docker image generation"

Pull Request - State: merged - Opened by HeSchie over 3 years ago - 3 comments
Labels: TODO-Pipeline, priority: high

#107 - add backend scripts to testing (including gitlab-ci)

Pull Request - State: merged - Opened by HeSchie over 3 years ago

#106 - Removed file backend/scripts/extract_ebi_data.py

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#103 - Added automatic versioning to repository

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#102 - sql environment.yml updated

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#101 - Resolve "improve SNP table upload performance"

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago
Labels: Doing-Pipeline

#100 - 182 write voc table modifier script

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#99 - Aa distribution plot

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#98 - Fixed empty date bug

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#97 - Rki prototype

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#96 - modified zip coordinates table for faster sql queries

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago
Labels: Doing-Pipeline, priority: high

#95 - bugfix data distribution plot

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#94 - lab and zip tables added

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago
Labels: Doing-Pipeline, priority: high

#93 - Make metadata flexible

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#92 - Resolve "make aa-nt translation script accessible for backend"

Pull Request - State: merged - Opened by JakubBartoszewicz over 3 years ago
Labels: Doing-Pipeline, priority: high

#91 - db name parameter in upload script added

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#90 - Master

Pull Request - State: merged - Opened by JakubBartoszewicz over 3 years ago

#89 - Germany app disabled

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#88 - Resolve "improve DB connection setup in App"

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago
Labels: Doing-Website

#87 - rm warnings base dist plot (upd panda syntax)

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#86 - Update snakemake version, README and create_config.py

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#85 - Resolve "Beautify the home page"

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago
Labels: Doing-Website, html, priority: high

#84 - Resolve "add imprint"

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago
Labels: Doing-Website

#83 - docs: fix file name of database setup script

Pull Request - State: merged - Opened by HeSchie over 3 years ago

#82 - Resolve "write script for sequence - VOC table"

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago
Labels: Doing-Pipeline, priority: high

#81 - Resolve "Handling aa deletion ("-") in the Consensus Table"

Pull Request - State: merged - Opened by JakubBartoszewicz over 3 years ago
Labels: Bug-Website, TODO-Website

#80 - fix: position converter, genome dropdown

Pull Request - State: merged - Opened by MelaniaNowicka over 3 years ago
Labels: Bug-Website

#79 - Added commands to create backup before updating the database

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#78 - Add automatic testing pipeline

Pull Request - State: merged - Opened by HeSchie over 3 years ago - 4 comments

#77 - Added temporary table for variants of concern

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#76 - Resolve "Standalone aa to nt translation script"

Pull Request - State: merged - Opened by MelaniaNowicka over 3 years ago
Labels: priority: mid, python

#75 - Removed gender, age and other info from host field

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#74 - Updated script to remove empty dates

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#73 - Add positions of interest in pipeline

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#72 - Added file backend/bibigrid/ansible_snakemake.yml

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#71 - [wip] 125-highlight_positions_of_interest

Pull Request - State: merged - Opened by sgiese over 3 years ago
Labels: MySQL, TODO-Website, plotly, priority: high

#70 - Get ebi data api

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#69 - Automate EBI updates

Pull Request - State: merged - Opened by mirand863 over 3 years ago

#68 - Update README.md

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#67 - Resolve ""No objects to concatenate" in consensus table"

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago
Labels: Doing-Website

#66 - renamed env variables

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#65 - Resolve "implement nucleotide - amino acid translation"

Pull Request - State: merged - Opened by JakubBartoszewicz over 3 years ago
Labels: Doing-Website, plotly, priority: high, python

#64 - Update README.md

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#63 - Yaml2env

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#62 - Update README.md

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#61 - adapt tests to new file structure

Pull Request - State: merged - Opened by Alice_Wittig over 3 years ago

#60 - Resolve "Implement app for Germany"

Pull Request - State: merged - Opened by Alice_Wittig almost 4 years ago
Labels: Doing-Germany, priority: high

#59 - Jenkinsfile added

Pull Request - State: merged - Opened by Alice_Wittig almost 4 years ago

#58 - exit status in app backend test added

Pull Request - State: merged - Opened by Alice_Wittig almost 4 years ago

#57 - exit status in frontend test added

Pull Request - State: merged - Opened by Alice_Wittig almost 4 years ago

#56 - simplify env.yml install in container

Pull Request - State: merged - Opened by hoelzer almost 4 years ago

#55 - Bugfix

Pull Request - State: merged - Opened by Alice_Wittig almost 4 years ago

#54 - fixed print function, bootstrap heights

Pull Request - State: merged - Opened by Alice_Wittig almost 4 years ago
Labels: Doing-Website

#53 - bugfix

Pull Request - State: merged - Opened by Alice_Wittig almost 4 years ago

#52 - Resolve "restructure app"

Pull Request - State: merged - Opened by Alice_Wittig almost 4 years ago
Labels: Doing-Website