Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitLab.com / bienvenu/matpopmod issues and pull requests

#122 - ExpansionNotFound and expand.optimize

Issue - State: opened - Opened by geeklhem over 2 years ago
Labels: bug, suboptimal, suspicious

#121 - Confidence interval for descriptors

Issue - State: opened - Opened by geeklhem over 2 years ago - 2 comments
Labels: api, suggestion

#119 - Sensitivity Report

Issue - State: opened - Opened by geeklhem over 2 years ago - 5 comments
Labels: api, plot, suggestion

#118 - Module expand

Issue - State: opened - Opened by geeklhem over 2 years ago - 3 comments
Labels: api, suggestion

#117 - Logo is not displayed properly on some set-ups

Issue - State: opened - Opened by bienvenu almost 3 years ago
Labels: suboptimal

#116 - test_attributes_readonly does not work

Issue - State: closed - Opened by bienvenu almost 3 years ago - 1 comment
Labels: testing

#115 - mean_age_population returns NaN when w has entries equal to zero

Issue - State: closed - Opened by bienvenu almost 3 years ago - 1 comment
Labels: suboptimal

#114 - COMPADRE ID245576 raises UnexpectedMathError

Issue - State: opened - Opened by bienvenu almost 3 years ago
Labels: suboptimal

#113 - Problem: proba_repro and life_expectancy_repro are incorrectly computed

Issue - State: closed - Opened by bienvenu almost 3 years ago - 1 comment
Labels: bug, math

#112 - Module kinship

Issue - State: opened - Opened by bienvenu almost 3 years ago
Labels: api, suggestion

#111 - plot.trajectory raises KeyError: 'Classes'

Issue - State: closed - Opened by bienvenu almost 3 years ago - 8 comments
Labels: bug, plot

#110 - Tutorial and cookbook

Issue - State: opened - Opened by geeklhem about 3 years ago - 3 comments
Labels: suggestion

#109 - Layman blogpost

Issue - State: closed - Opened by geeklhem about 3 years ago - 18 comments
Labels: compadre, releasing

#108 - Set reminders to update the version of COMPADRE/COMADRE

Issue - State: closed - Opened by bienvenu about 3 years ago - 5 comments
Labels: compadre, releasing

#107 - Checking the reference files for test_reference.py

Issue - State: opened - Opened by bienvenu about 3 years ago
Labels: testing, todo

#106 - Nodes clipping in plot.lifecycle when there is no self-loop

Issue - State: closed - Opened by geeklhem about 3 years ago - 2 comments
Labels: bug, plot

#105 - AttributeError: 'MPM' object has no attribute 'entropy' or 'xi'

Issue - State: closed - Opened by geeklhem about 3 years ago - 2 comments
Labels: bug, testing

#104 - License

Issue - State: closed - Opened by bienvenu about 3 years ago - 1 comment
Labels: releasing, suggestion

#103 - Prevent linebreak before punctation

Issue - State: closed - Opened by bienvenu about 3 years ago - 6 comments
Labels: docs, suboptimal

#102 - AttributeError: 'MPM' object has no attribute 'one_proper_newborn_class'

Issue - State: closed - Opened by geeklhem about 3 years ago - 4 comments
Labels: bug

#101 - Not running the pipeline for every commit to dev

Issue - State: closed - Opened by bienvenu about 3 years ago - 3 comments
Labels: suboptimal, suggestion

#100 - Export version number to the documentation

Issue - State: closed - Opened by bienvenu about 3 years ago - 5 comments
Labels: docs, suggestion

#99 - Suggestion: mpm.examples.all_models should be a MPMCollection

Issue - State: closed - Opened by geeklhem about 3 years ago - 4 comments
Labels: suggestion

#98 - Total reproductive output fails with NameError

Issue - State: closed - Opened by geeklhem about 3 years ago - 2 comments
Labels: bug

#97 - AttributeError in model.xi and model.entropy

Issue - State: closed - Opened by geeklhem about 3 years ago - 4 comments
Labels: bug

#96 - Empty dictionary / list as default arguments

Issue - State: closed - Opened by bienvenu about 3 years ago - 5 comments

#95 - Problematic steps when running main.R

Issue - State: closed - Opened by bienvenu about 3 years ago
Labels: compadre

#94 - Cannot convert COMPADRE with R 3.5.2

Issue - State: closed - Opened by bienvenu about 3 years ago - 1 comment
Labels: compadre, won't fix :(

#93 - Change pip commands in README

Issue - State: closed - Opened by bienvenu about 3 years ago - 1 comment

#92 - Issue better information messages when building the doc

Issue - State: closed - Opened by bienvenu about 3 years ago - 1 comment
Labels: docs, suboptimal, suggestion, won't fix :(

#91 - updating version 0.1.0 to PyPi

Issue - State: closed - Opened by bienvenu about 3 years ago - 25 comments
Labels: orga, releasing

#90 - incorrect width in plot.matrices with bubbles

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: bug, plot

#89 - plot.matrices: draw the legend on the side of the figure, not on top of it

Issue - State: closed - Opened by bienvenu over 3 years ago - 2 comments
Labels: plot, suboptimal, suggestion

#88 - Changes in the API of plot.matrices (formerly plot.show_matrices)

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: plot

#87 - plot.matrices: are different scales used for style = "bars"?

Issue - State: closed - Opened by bienvenu over 3 years ago - 2 comments
Labels: suboptimal, suspicious, todo

#86 - Incorrect figure boundaries with `plot.matrices`

Issue - State: opened - Opened by bienvenu over 3 years ago - 3 comments
Labels: plot, suboptimal

#85 - plot.trajectory: custom timespan, grouping classes

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: plot, todo

#84 - test known mpms

Issue - State: closed - Opened by bienvenu over 3 years ago - 15 comments
Labels: testing, todo

#83 - Genealogical Collapsing does not seem to preserve reproductive values

Issue - State: closed - Opened by geeklhem over 3 years ago - 3 comments
Labels: bug

#82 - Module trajectories

Issue - State: closed - Opened by bienvenu over 3 years ago - 2 comments
Labels: api, todo

#81 - Add a note about PRNG in the FAQ

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: docs, todo

#80 - Random number generation

Issue - State: closed - Opened by bienvenu over 3 years ago - 8 comments
Labels: api

#79 - PGC PRNG

Issue - State: closed - Opened by bienvenu over 3 years ago - 7 comments
Labels: math

#78 - Documentation style for functions with tons of arguments

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: docs

#77 - Add color schemes to matpopmod

Issue - State: closed - Opened by bienvenu over 3 years ago - 10 comments

#76 - plot.life_cycle: align labels of of classes in legends

Issue - State: closed - Opened by bienvenu over 3 years ago - 6 comments
Labels: plot, suboptimal, suggestion

#75 - plot.life_cycle: legend is drawn outside of the figure

Issue - State: closed - Opened by bienvenu over 3 years ago - 51 comments
Labels: plot, suboptimal

#74 - Add a sphinx gallery to the homepage

Issue - State: closed - Opened by bienvenu over 3 years ago - 6 comments
Labels: docs, todo

#73 - plot._lifecycle_labels sometimes fails

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: bug, plot

#72 - plot life_cycle: use red as default for fertilities and dotted survival for overlapping edges

Issue - State: closed - Opened by bienvenu over 3 years ago - 27 comments
Labels: plot, suggestion

#71 - plot.life_cycle: half drawn circles in some graphs

Issue - State: closed - Opened by bienvenu over 3 years ago
Labels: bug, plot

#70 - plot.life_cycle: draw node labels in white for nodes for which fill == True

Issue - State: closed - Opened by bienvenu over 3 years ago - 2 comments
Labels: plot, suggestion

#69 - Add metadata["MatrixClassAuthor"] to the models in examples so that "auto" can be used in plot.life_cycle

Issue - State: closed - Opened by bienvenu over 3 years ago - 4 comments
Labels: plot, suggestion, todo

#68 - plot.life_cycles: arrow heads are plotted in color C0 by default (instead of black).

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: plot, suboptimal, todo

#67 - Include an alias to matplotlib.pyplot.show() in matpopmod.plot

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: plot, suggestion

#66 - plot.life_cycle: incorrect edge labels with i -> j and j -> transitions

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: bug, plot, todo

#65 - plot.life_cycle: draw the labels of the edges with the same color as the edges

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: plot, suboptimal, todo

#64 - Road to 1.0.0

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: orga, releasing

#63 - label of edges in plot.graph overuses scientific notation

Issue - State: closed - Opened by bienvenu over 3 years ago - 11 comments
Labels: plot, suboptimal, suggestion

#62 - .. plot:: not working in module collapsing

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: bug, docs

#61 - Reducing the amount of empty space around the life-cycle graph in plot.graph

Issue - State: closed - Opened by bienvenu over 3 years ago - 6 comments
Labels: suboptimal, suggestion

#60 - labels of nodes in the life-cycle graph

Issue - State: closed - Opened by bienvenu over 3 years ago - 7 comments
Labels: suggestion

#59 - Ignore some warnings

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: suboptimal, todo

#58 - A significant number of models have R0 = 0 or extremely small

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: suspicious

#57 - plot.graph is broken on my computer

Issue - State: closed - Opened by bienvenu over 3 years ago - 9 comments
Labels: bug, plot

#56 - loading of submodules.

Issue - State: closed - Opened by bienvenu over 3 years ago - 5 comments
Labels: api, bug, suggestion

#55 - individual_R0 returns nan

Issue - State: closed - Opened by bienvenu over 3 years ago - 2 comments
Labels: suspicious

#54 - catching classes that do not inherit from BaseException is not allowed

Issue - State: closed - Opened by bienvenu over 3 years ago - 28 comments
Labels: bug

#53 - Improve the landing page of the full API documentation

Issue - State: closed - Opened by bienvenu over 3 years ago
Labels: docs, todo

#52 - Finish the quickstart tutorial

Issue - State: closed - Opened by bienvenu over 3 years ago - 2 comments
Labels: docs, todo

#51 - Module IBM

Issue - State: opened - Opened by bienvenu over 3 years ago - 8 comments
Labels: api

#46 - html representation of MPM objects in jupyter notebook

Issue - State: closed - Opened by geeklhem over 3 years ago - 2 comments
Labels: api, suggestion, todo

#45 - How does matpopmod compare to other libraries

Issue - State: closed - Opened by bienvenu over 3 years ago - 6 comments
Labels: docs

#42 - Structure of the tests

Issue - State: closed - Opened by bienvenu over 3 years ago - 4 comments
Labels: testing

#40 - Pretty print MPMs

Issue - State: closed - Opened by bienvenu over 3 years ago - 5 comments
Labels: todo

#39 - Comparison with the popbio library

Issue - State: closed - Opened by geeklhem over 3 years ago - 10 comments
Labels: testing

#35 - Submitting the library to Zenodo to have a doi

Issue - State: closed - Opened by bienvenu over 3 years ago - 4 comments
Labels: releasing, suggestion

#34 - Compare matpopmod to other libraries

Issue - State: closed - Opened by bienvenu over 3 years ago
Labels: docs, releasing, suggestion

#33 - module `plot`

Issue - State: closed - Opened by bienvenu over 3 years ago - 39 comments
Labels: api, plot, suggestion

#32 - FAQ

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: docs

#30 - Random matrices and "mock" MPMs

Issue - State: opened - Opened by bienvenu over 3 years ago - 9 comments
Labels: api, suggestion

#27 - README

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: docs

#21 - Check that arrays-valued attributes are immutable

Issue - State: closed - Opened by bienvenu over 3 years ago - 2 comments
Labels: testing, todo

#20 - Freeze versions

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: releasing

#19 - Ship example MPMs

Issue - State: closed - Opened by bienvenu over 3 years ago - 33 comments
Labels: api, orga, suggestion

#16 - Defining T_R0 when lambda = 1

Issue - State: closed - Opened by bienvenu over 3 years ago
Labels: math, todo

#14 - List of "self-coherency" tests for module MPM

Issue - State: opened - Opened by bienvenu over 3 years ago - 13 comments
Labels: testing

#13 - List of problems in / suggestions for the documentation

Issue - State: closed - Opened by bienvenu over 3 years ago - 55 comments
Labels: docs, suboptimal, suggestion, todo

#12 - Conventions for docstrings

Issue - State: closed - Opened by bienvenu over 3 years ago - 4 comments
Labels: docs, orga

#11 - Instantiating MPM

Issue - State: closed - Opened by bienvenu over 3 years ago - 6 comments
Labels: api

#10 - Coding style

Issue - State: closed - Opened by bienvenu over 3 years ago
Labels: orga

#9 - Module 'model'

Issue - State: closed - Opened by bienvenu over 3 years ago
Labels: api, orga

#8 - Organizing the work

Issue - State: closed - Opened by bienvenu over 3 years ago
Labels: orga

#7 - COMADRE / COMPADRE

Issue - State: closed - Opened by bienvenu over 3 years ago - 51 comments
Labels: api, orga, releasing

#6 - Testing

Issue - State: closed - Opened by bienvenu over 3 years ago - 10 comments
Labels: testing

#5 - Distribution / webpage / marketing

Issue - State: closed - Opened by bienvenu over 3 years ago - 4 comments
Labels: orga, releasing, suggestion

#4 - Descriptors of matrix population models

Issue - State: closed - Opened by bienvenu over 3 years ago - 29 comments
Labels: math, orga

#3 - Branching processes

Issue - State: opened - Opened by bienvenu over 3 years ago - 3 comments
Labels: api, orga, suggestion

#2 - Structure / content / API

Issue - State: closed - Opened by bienvenu over 3 years ago - 1 comment
Labels: api