Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitLab.com / bienvenu/matpopmod issues and pull requests
#122 - ExpansionNotFound and expand.optimize
Issue -
State: opened - Opened by geeklhem over 2 years ago
Labels: bug, suboptimal, suspicious
#121 - Confidence interval for descriptors
Issue -
State: opened - Opened by geeklhem over 2 years ago
- 2 comments
Labels: api, suggestion
#120 - optimize_z fail if there is an ExpansionNotFound (Could not find an expanded model with survival probabilities < 1 after 1000 tries)
Issue -
State: closed - Opened by geeklhem over 2 years ago
- 14 comments
Labels: bug
#119 - Sensitivity Report
Issue -
State: opened - Opened by geeklhem over 2 years ago
- 5 comments
Labels: api, plot, suggestion
#118 - Module expand
Issue -
State: opened - Opened by geeklhem over 2 years ago
- 3 comments
Labels: api, suggestion
#117 - Logo is not displayed properly on some set-ups
Issue -
State: opened - Opened by bienvenu almost 3 years ago
Labels: suboptimal
#116 - test_attributes_readonly does not work
Issue -
State: closed - Opened by bienvenu almost 3 years ago
- 1 comment
Labels: testing
#115 - mean_age_population returns NaN when w has entries equal to zero
Issue -
State: closed - Opened by bienvenu almost 3 years ago
- 1 comment
Labels: suboptimal
#114 - COMPADRE ID245576 raises UnexpectedMathError
Issue -
State: opened - Opened by bienvenu almost 3 years ago
Labels: suboptimal
#113 - Problem: proba_repro and life_expectancy_repro are incorrectly computed
Issue -
State: closed - Opened by bienvenu almost 3 years ago
- 1 comment
Labels: bug, math
#112 - Module kinship
Issue -
State: opened - Opened by bienvenu almost 3 years ago
Labels: api, suggestion
#111 - plot.trajectory raises KeyError: 'Classes'
Issue -
State: closed - Opened by bienvenu almost 3 years ago
- 8 comments
Labels: bug, plot
#110 - Tutorial and cookbook
Issue -
State: opened - Opened by geeklhem about 3 years ago
- 3 comments
Labels: suggestion
#109 - Layman blogpost
Issue -
State: closed - Opened by geeklhem about 3 years ago
- 18 comments
Labels: compadre, releasing
#108 - Set reminders to update the version of COMPADRE/COMADRE
Issue -
State: closed - Opened by bienvenu about 3 years ago
- 5 comments
Labels: compadre, releasing
#107 - Checking the reference files for test_reference.py
Issue -
State: opened - Opened by bienvenu about 3 years ago
Labels: testing, todo
#106 - Nodes clipping in plot.lifecycle when there is no self-loop
Issue -
State: closed - Opened by geeklhem about 3 years ago
- 2 comments
Labels: bug, plot
#105 - AttributeError: 'MPM' object has no attribute 'entropy' or 'xi'
Issue -
State: closed - Opened by geeklhem about 3 years ago
- 2 comments
Labels: bug, testing
#104 - License
Issue -
State: closed - Opened by bienvenu about 3 years ago
- 1 comment
Labels: releasing, suggestion
#103 - Prevent linebreak before punctation
Issue -
State: closed - Opened by bienvenu about 3 years ago
- 6 comments
Labels: docs, suboptimal
#102 - AttributeError: 'MPM' object has no attribute 'one_proper_newborn_class'
Issue -
State: closed - Opened by geeklhem about 3 years ago
- 4 comments
Labels: bug
#101 - Not running the pipeline for every commit to dev
Issue -
State: closed - Opened by bienvenu about 3 years ago
- 3 comments
Labels: suboptimal, suggestion
#100 - Export version number to the documentation
Issue -
State: closed - Opened by bienvenu about 3 years ago
- 5 comments
Labels: docs, suggestion
#99 - Suggestion: mpm.examples.all_models should be a MPMCollection
Issue -
State: closed - Opened by geeklhem about 3 years ago
- 4 comments
Labels: suggestion
#98 - Total reproductive output fails with NameError
Issue -
State: closed - Opened by geeklhem about 3 years ago
- 2 comments
Labels: bug
#97 - AttributeError in model.xi and model.entropy
Issue -
State: closed - Opened by geeklhem about 3 years ago
- 4 comments
Labels: bug
#96 - Empty dictionary / list as default arguments
Issue -
State: closed - Opened by bienvenu about 3 years ago
- 5 comments
#95 - Problematic steps when running main.R
Issue -
State: closed - Opened by bienvenu about 3 years ago
Labels: compadre
#94 - Cannot convert COMPADRE with R 3.5.2
Issue -
State: closed - Opened by bienvenu about 3 years ago
- 1 comment
Labels: compadre, won't fix :(
#93 - Change pip commands in README
Issue -
State: closed - Opened by bienvenu about 3 years ago
- 1 comment
#92 - Issue better information messages when building the doc
Issue -
State: closed - Opened by bienvenu about 3 years ago
- 1 comment
Labels: docs, suboptimal, suggestion, won't fix :(
#91 - updating version 0.1.0 to PyPi
Issue -
State: closed - Opened by bienvenu about 3 years ago
- 25 comments
Labels: orga, releasing
#90 - incorrect width in plot.matrices with bubbles
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 1 comment
Labels: bug, plot
#89 - plot.matrices: draw the legend on the side of the figure, not on top of it
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 2 comments
Labels: plot, suboptimal, suggestion
#88 - Changes in the API of plot.matrices (formerly plot.show_matrices)
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 1 comment
Labels: plot
#87 - plot.matrices: are different scales used for style = "bars"?
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 2 comments
Labels: suboptimal, suspicious, todo
#86 - Incorrect figure boundaries with `plot.matrices`
Issue -
State: opened - Opened by bienvenu over 3 years ago
- 3 comments
Labels: plot, suboptimal
#85 - plot.trajectory: custom timespan, grouping classes
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 1 comment
Labels: plot, todo
#84 - test known mpms
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 15 comments
Labels: testing, todo
#83 - Genealogical Collapsing does not seem to preserve reproductive values
Issue -
State: closed - Opened by geeklhem over 3 years ago
- 3 comments
Labels: bug
#82 - Module trajectories
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 2 comments
Labels: api, todo
#81 - Add a note about PRNG in the FAQ
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 1 comment
Labels: docs, todo
#80 - Random number generation
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 8 comments
Labels: api
#79 - PGC PRNG
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 7 comments
Labels: math
#78 - Documentation style for functions with tons of arguments
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 1 comment
Labels: docs
#77 - Add color schemes to matpopmod
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 10 comments
#76 - plot.life_cycle: align labels of of classes in legends
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 6 comments
Labels: plot, suboptimal, suggestion
#75 - plot.life_cycle: legend is drawn outside of the figure
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 51 comments
Labels: plot, suboptimal
#74 - Add a sphinx gallery to the homepage
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 6 comments
Labels: docs, todo
#73 - plot._lifecycle_labels sometimes fails
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 1 comment
Labels: bug, plot
#72 - plot life_cycle: use red as default for fertilities and dotted survival for overlapping edges
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 27 comments
Labels: plot, suggestion
#71 - plot.life_cycle: half drawn circles in some graphs
Issue -
State: closed - Opened by bienvenu over 3 years ago
Labels: bug, plot
#70 - plot.life_cycle: draw node labels in white for nodes for which fill == True
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 2 comments
Labels: plot, suggestion
#69 - Add metadata["MatrixClassAuthor"] to the models in examples so that "auto" can be used in plot.life_cycle
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 4 comments
Labels: plot, suggestion, todo
#68 - plot.life_cycles: arrow heads are plotted in color C0 by default (instead of black).
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 1 comment
Labels: plot, suboptimal, todo
#67 - Include an alias to matplotlib.pyplot.show() in matpopmod.plot
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 1 comment
Labels: plot, suggestion
#66 - plot.life_cycle: incorrect edge labels with i -> j and j -> transitions
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 1 comment
Labels: bug, plot, todo
#65 - plot.life_cycle: draw the labels of the edges with the same color as the edges
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 1 comment
Labels: plot, suboptimal, todo
#64 - Road to 1.0.0
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 1 comment
Labels: orga, releasing
#63 - label of edges in plot.graph overuses scientific notation
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 11 comments
Labels: plot, suboptimal, suggestion
#62 - .. plot:: not working in module collapsing
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 1 comment
Labels: bug, docs
#61 - Reducing the amount of empty space around the life-cycle graph in plot.graph
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 6 comments
Labels: suboptimal, suggestion
#60 - labels of nodes in the life-cycle graph
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 7 comments
Labels: suggestion
#59 - Ignore some warnings
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 1 comment
Labels: suboptimal, todo
#58 - A significant number of models have R0 = 0 or extremely small
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 1 comment
Labels: suspicious
#57 - plot.graph is broken on my computer
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 9 comments
Labels: bug, plot
#56 - loading of submodules.
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 5 comments
Labels: api, bug, suggestion
#55 - individual_R0 returns nan
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 2 comments
Labels: suspicious
#54 - catching classes that do not inherit from BaseException is not allowed
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 28 comments
Labels: bug
#53 - Improve the landing page of the full API documentation
Issue -
State: closed - Opened by bienvenu over 3 years ago
Labels: docs, todo
#52 - Finish the quickstart tutorial
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 2 comments
Labels: docs, todo
#51 - Module IBM
Issue -
State: opened - Opened by bienvenu over 3 years ago
- 8 comments
Labels: api
#46 - html representation of MPM objects in jupyter notebook
Issue -
State: closed - Opened by geeklhem over 3 years ago
- 2 comments
Labels: api, suggestion, todo
#45 - How does matpopmod compare to other libraries
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 6 comments
Labels: docs
#42 - Structure of the tests
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 4 comments
Labels: testing
#40 - Pretty print MPMs
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 5 comments
Labels: todo
#39 - Comparison with the popbio library
Issue -
State: closed - Opened by geeklhem over 3 years ago
- 10 comments
Labels: testing
#35 - Submitting the library to Zenodo to have a doi
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 4 comments
Labels: releasing, suggestion
#34 - Compare matpopmod to other libraries
Issue -
State: closed - Opened by bienvenu over 3 years ago
Labels: docs, releasing, suggestion
#33 - module `plot`
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 39 comments
Labels: api, plot, suggestion
#30 - Random matrices and "mock" MPMs
Issue -
State: opened - Opened by bienvenu over 3 years ago
- 9 comments
Labels: api, suggestion
#27 - README
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 1 comment
Labels: docs
#21 - Check that arrays-valued attributes are immutable
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 2 comments
Labels: testing, todo
#20 - Freeze versions
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 1 comment
Labels: releasing
#19 - Ship example MPMs
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 33 comments
Labels: api, orga, suggestion
#16 - Defining T_R0 when lambda = 1
Issue -
State: closed - Opened by bienvenu over 3 years ago
Labels: math, todo
#14 - List of "self-coherency" tests for module MPM
Issue -
State: opened - Opened by bienvenu over 3 years ago
- 13 comments
Labels: testing
#13 - List of problems in / suggestions for the documentation
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 55 comments
Labels: docs, suboptimal, suggestion, todo
#12 - Conventions for docstrings
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 4 comments
Labels: docs, orga
#11 - Instantiating MPM
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 6 comments
Labels: api
#10 - Coding style
Issue -
State: closed - Opened by bienvenu over 3 years ago
Labels: orga
#9 - Module 'model'
Issue -
State: closed - Opened by bienvenu over 3 years ago
Labels: api, orga
#8 - Organizing the work
Issue -
State: closed - Opened by bienvenu over 3 years ago
Labels: orga
#7 - COMADRE / COMPADRE
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 51 comments
Labels: api, orga, releasing
#6 - Testing
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 10 comments
Labels: testing
#5 - Distribution / webpage / marketing
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 4 comments
Labels: orga, releasing, suggestion
#4 - Descriptors of matrix population models
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 29 comments
Labels: math, orga
#3 - Branching processes
Issue -
State: opened - Opened by bienvenu over 3 years ago
- 3 comments
Labels: api, orga, suggestion
#2 - Structure / content / API
Issue -
State: closed - Opened by bienvenu over 3 years ago
- 1 comment
Labels: api