Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitLab.com / atomap/atomap issues and pull requests

#115 - processing speed slowing down with more atoms to fit

Issue - State: opened - Opened by usr0101 over 1 year ago

#114 - Save images in jpeg or png format (MakeTestDataset)

Issue - State: opened - Opened by AliBaghizadeh almost 2 years ago

#113 - Any method to know which atom fails during gaussian fiting?

Issue - State: opened - Opened by Shzhhh almost 2 years ago

#112 - pint.unit module not found?

Issue - State: closed - Opened by rahimofr almost 2 years ago - 1 comment

#111 - Finding the feature separation not working

Issue - State: opened - Opened by mardilos about 2 years ago - 2 comments

#109 - Stack of navigator in minimum separation feature

Issue - State: opened - Opened by dipanjan.iisc about 3 years ago

#108 - Issue with loading image for atomap

Issue - State: opened - Opened by faith.akinlade about 3 years ago - 3 comments

#107 - Atomap on google colaboratory

Issue - State: opened - Opened by rohitsinghupes2011.rp about 3 years ago - 1 comment

#106 - It's possible to construct Oxygen atoms sites.

Issue - State: closed - Opened by somboon39 over 3 years ago

#105 - ValueError: negative dimensions are not allowed

Issue - State: closed - Opened by somboon39 over 3 years ago

#104 - Slow PCA: suggestion

Issue - State: closed - Opened by din14970 over 3 years ago - 2 comments

#103 - Test suite fails on macos

Issue - State: opened - Opened by ericpre over 3 years ago - 1 comment

#102 - The value of atom_amplitude_gaussian2d is weird

Issue - State: opened - Opened by Shzhhh over 3 years ago - 2 comments

#101 - 'atomic_resolution' signal type

Issue - State: opened - Opened by ericpre over 3 years ago - 4 comments

#100 - sublattice.atom_positions is int, not float

Issue - State: opened - Opened by thomasaarholt almost 4 years ago

#99 - Extract intensity at refined atomic column positions

Issue - State: opened - Opened by dr.mfireman almost 4 years ago - 1 comment

#98 - Matplotlib 3.3 Deprecated

Issue - State: opened - Opened by matthewwest55 almost 4 years ago - 2 comments

#97 - Issues with installing Atomap

Issue - State: opened - Opened by Y.Linden about 4 years ago - 2 comments

#96 - Problem in starting Atomap at the first time

Issue - State: closed - Opened by TYL2020 over 4 years ago - 1 comment

#95 - Load xyz-files as HyperSpy signal

Issue - State: opened - Opened by magnunor over 4 years ago

#94 - Save atom lattice image

Issue - State: closed - Opened by yy-ssang over 4 years ago - 5 comments

#93 - New Atom Position attribute for elements and z coordinate.

Issue - State: opened - Opened by PinkShnack almost 5 years ago - 4 comments

#92 - Test suite fails in the hyperspy bundle/winpython distribution

Issue - State: closed - Opened by ericpre about 5 years ago - 3 comments

#91 - Add standard deviation to _get_property_line_profile

Issue - State: closed - Opened by vogela about 5 years ago - 2 comments

#89 - Delete atoms in atomap

Issue - State: opened - Opened by rainagyw about 5 years ago - 1 comment

#87 - Error while running test_tool.py > test_simple_flip.

Issue - State: opened - Opened by PinkShnack about 5 years ago - 1 comment

#85 - Adding a new section to Atomap?

Issue - State: opened - Opened by PinkShnack over 5 years ago - 5 comments

#84 - Making a test for calculate max (& min, mean) intensity

Issue - State: opened - Opened by PinkShnack over 5 years ago - 2 comments

#83 - Remove outlying atom positions

Issue - State: opened - Opened by chrisallen80 over 5 years ago - 1 comment

#82 - get_feature_seperation not working for HR-TEM image

Issue - State: opened - Opened by martin.siron over 5 years ago - 1 comment

#81 - sub.plot() much slower than add_atoms_with_gui in plotting markers

Issue - State: opened - Opened by thomasaarholt over 5 years ago - 2 comments

#79 - Tests not being checked?

Issue - State: opened - Opened by thomasaarholt over 5 years ago - 1 comment

#78 - Identifying speed improvements to Gaussian2D refinement

Issue - State: opened - Opened by thomasaarholt over 5 years ago

#76 - Integrator integer overflow for high-value datasets

Issue - State: opened - Opened by thomasaarholt over 5 years ago - 3 comments

#75 - Speeding up Gaussian refinement

Issue - State: opened - Opened by thomasaarholt over 5 years ago - 2 comments

#74 - ModuleNotFoundError during installation on windows 7

Issue - State: closed - Opened by hyinsuny over 5 years ago - 4 comments

#73 - atom_positions have different types

Issue - State: opened - Opened by thomasaarholt almost 6 years ago - 8 comments

#72 - get_monolayer_distance_map() should explicitly require construct_zone_axes()

Issue - State: opened - Opened by thomasaarholt almost 6 years ago - 1 comment

#71 - .plot_ellipticity_vectors() figure is always rectangular

Issue - State: opened - Opened by thomasaarholt almost 6 years ago - 1 comment

#70 - Using get_atom_positions on large images

Issue - State: opened - Opened by thomasaarholt almost 6 years ago - 5 comments

#69 - get_feature_separation not working on specific files, unhelpful error message

Issue - State: closed - Opened by thomasaarholt almost 6 years ago - 2 comments

#68 - Displaying Atom Position attributes in a sublattice plot

Issue - State: opened - Opened by PinkShnack almost 6 years ago - 1 comment

#67 - Linking sublattices

Issue - State: opened - Opened by PinkShnack almost 6 years ago - 1 comment

#66 - Atomap installation check

Issue - State: opened - Opened by Paultjuuh almost 6 years ago - 1 comment

#65 - Calibrating the sublattice/Atom_Lattice objects

Issue - State: opened - Opened by PinkShnack about 6 years ago - 2 comments

#64 - Handle poor Gaussian fitting

Issue - State: opened - Opened by erh3cq about 6 years ago - 3 comments

#63 - Improve setup.py and pytest integration

Issue - State: opened - Opened by magnunor about 6 years ago

#62 - Add better handling of outer edge atoms when finding second sublattices

Issue - State: opened - Opened by magnunor over 6 years ago - 1 comment

#61 - Dealing with vacancies, hexagonal lattices

Issue - State: opened - Opened by PinkShnack over 6 years ago - 6 comments

#60 - Error when finding peak_separation

Issue - State: opened - Opened by thomasaarholt over 6 years ago - 2 comments

#59 - Atomic Column Integrator does not handle spectrum images correctly

Issue - State: opened - Opened by thomasaarholt over 6 years ago - 8 comments

#58 - Add error message for complex signals

Issue - State: opened - Opened by magnunor over 6 years ago

#57 - Handle finding atom in single-atom images

Issue - State: opened - Opened by thomasaarholt over 6 years ago - 1 comment

#56 - Accidentally making get_atom_positions take forever

Issue - State: closed - Opened by thomasaarholt over 6 years ago - 2 comments

#55 - Improve error message for wrong dtype

Issue - State: opened - Opened by magnunor over 6 years ago

#54 - Throws type error when doing 2D Gaussian Refining

Issue - State: closed - Opened by shisendo over 6 years ago - 3 comments

#53 - Save result of construct_zone_axes

Issue - State: opened - Opened by rbjorge almost 7 years ago

#52 - Disconnected planes with construct_zone_axes

Issue - State: opened - Opened by rbjorge almost 7 years ago - 4 comments

#51 - Improve `sublattice.get_model_image` runtime

Issue - State: opened - Opened by magnunor almost 7 years ago

#50 - construct_zone_axes memory use

Issue - State: opened - Opened by rbjorge almost 7 years ago - 5 comments

#49 - show_progressbar argument when convenient

Issue - State: opened - Opened by thomasaarholt almost 7 years ago - 1 comment

#48 - am.Sublattice should check image is numpy array

Issue - State: closed - Opened by thomasaarholt almost 7 years ago - 2 comments

#47 - Update release date for sphinx frontpage

Issue - State: closed - Opened by magnunor almost 7 years ago

#46 - Proofread sphinx documentation

Issue - State: closed - Opened by magnunor almost 7 years ago
Labels: documentation

#45 - Documentation: check install instructions

Issue - State: closed - Opened by magnunor almost 7 years ago
Labels: documentation

#44 - Make sublattice._get_property_line_profile public

Issue - State: opened - Opened by magnunor about 7 years ago
Labels: enhancement

#43 - Bug for Ubuntu 17.10 and debian unstable, get_atom_positions

Issue - State: closed - Opened by idahj about 7 years ago - 2 comments
Labels: bug

#42 - Include figure generation in the make html procedure

Issue - State: closed - Opened by idahj about 7 years ago - 3 comments

#41 - Question: How interplation for maps really works

Issue - State: opened - Opened by idahj about 7 years ago
Labels: discussion

#40 - Unittest runtime too long

Issue - State: opened - Opened by idahj about 7 years ago - 2 comments
Labels: suggestion

#39 - change name of zone_axis_para_list

Issue - State: opened - Opened by idahj about 7 years ago

#38 - Make method public

Issue - State: closed - Opened by magnunor about 7 years ago

#37 - Make function public

Issue - State: closed - Opened by magnunor about 7 years ago

#36 - Add an Atom_Lattice to dummy_data

Issue - State: closed - Opened by magnunor about 7 years ago

#35 - Check possibly reduntant functions

Issue - State: closed - Opened by magnunor about 7 years ago - 2 comments

#34 - Update the Jupyter notebook demos

Issue - State: closed - Opened by magnunor about 7 years ago

#33 - Update online frontpage

Issue - State: closed - Opened by magnunor about 7 years ago - 1 comment
Labels: documentation

#32 - Misc. pages for the online tutorial

Issue - State: closed - Opened by magnunor about 7 years ago - 1 comment
Labels: documentation

#31 - Improve online tutorials

Issue - State: closed - Opened by magnunor about 7 years ago - 3 comments
Labels: documentation

#30 - Improve docstrings

Issue - State: closed - Opened by magnunor about 7 years ago
Labels: documentation

#29 - sublattice.find_nearest_neighbors() not working as expected

Issue - State: closed - Opened by idahj about 7 years ago

#28 - Rotation of sublattice

Issue - State: opened - Opened by idahj about 7 years ago

#27 - Limitation in plot_planes (get_all_atom_planes_by_zone_vector)

Issue - State: opened - Opened by idahj about 7 years ago

#26 - Release 0.1.0: Remaining tasks

Issue - State: closed - Opened by idahj about 7 years ago - 1 comment

#25 - Replace make_artifical_atomic_signal function with TestData class

Issue - State: closed - Opened by magnunor about 7 years ago - 1 comment
Labels: enhancement

#24 - Suggestion: Useful tutorials

Issue - State: closed - Opened by idahj about 7 years ago

#23 - Bug: Atom position outside the image

Issue - State: closed - Opened by idahj about 7 years ago - 1 comment
Labels: bug, confirmed

#22 - Bug: load_atom_lattice_from_hdf5 with construct_zone_axes as default fails

Issue - State: closed - Opened by idahj about 7 years ago - 2 comments
Labels: bug, confirmed

#21 - User guide for installing from source

Issue - State: closed - Opened by idahj about 7 years ago - 1 comment
Labels: documentation

#20 - Bug report: No module named 'sklearn' when installing from source on debian unstable

Issue - State: closed - Opened by idahj about 7 years ago - 2 comments
Labels: bug

#18 - Add analysis of dumbbell structures to user guide

Issue - State: opened - Opened by magnunor over 7 years ago
Labels: documentation

#16 - Combining Atoms with Absolute_Integrator

Issue - State: opened - Opened by k8macarthur over 7 years ago - 37 comments

#3 - Add GUI function for selecting region of interest

Issue - State: opened - Opened by magnunor almost 9 years ago - 1 comment

#2 - Add simple GUI functions for calibrating images

Issue - State: opened - Opened by magnunor almost 9 years ago

#1 - Add support for a "model" image

Issue - State: opened - Opened by magnunor almost 9 years ago