Ecosyste.ms: Issues

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GitHub / zyxue/kleat issues and pull requests

#20 - Make window_size adjustable when searching for polyadenylation signal hexamer

Issue - State: open - Opened by zyxue over 6 years ago
Labels: enhancement

#19 - visualize-alignment.py enhancement

Issue - State: open - Opened by zyxue over 6 years ago
Labels: enhancement

#18 - Sum up num_suffix_reads is buggy

Issue - State: closed - Opened by zyxue over 6 years ago
Labels: bug, high priority

#17 - Format test case doc strings

Issue - State: open - Opened by zyxue over 6 years ago
Labels: help wanted, Easy

#16 - test edgecases

Issue - State: open - Opened by zyxue over 6 years ago

#15 - Parallize the initial looping through contig

Issue - State: closed - Opened by zyxue over 6 years ago - 5 comments
Labels: enhancement

#14 - Refactor calc_genome_offset with skip_check_size

Issue - State: open - Opened by zyxue over 6 years ago
Labels: enhancement

#13 - Consider how to deal with fuzzy skip boundary

Issue - State: closed - Opened by zyxue over 6 years ago

#13 - Consider how to deal with fuzzy skip boundary

Issue - State: closed - Opened by zyxue over 6 years ago

#12 - Deal with hardclip in xseq_minus.py

Issue - State: closed - Opened by zyxue over 6 years ago - 1 comment

#12 - Deal with hardclip in xseq_minus.py

Issue - State: closed - Opened by zyxue over 6 years ago - 1 comment

#11 - Unify tail_side and tail_base, and other names that indicates the same information

Issue - State: open - Opened by zyxue over 6 years ago
Labels: enhancement

#11 - Unify tail_side and tail_base, and other names that indicates the same information

Issue - State: open - Opened by zyxue over 6 years ago
Labels: enhancement

#10 - ctg_hex_pos and ctg_hex_dist is buggy when the contig has indels

Issue - State: closed - Opened by zyxue over 6 years ago - 4 comments
Labels: bug, high priority

#10 - ctg_hex_pos and ctg_hex_dist is buggy when the contig has indels

Issue - State: closed - Opened by zyxue over 6 years ago - 4 comments
Labels: bug, high priority

#8 - Work out difference between query_length and infer_query_length

Issue - State: closed - Opened by zyxue over 6 years ago - 1 comment

#8 - Work out difference between query_length and infer_query_length

Issue - State: closed - Opened by zyxue over 6 years ago - 1 comment

#7 - Think through hardclip from softclip

Issue - State: open - Opened by zyxue over 6 years ago
Labels: enhancement, question

#7 - Think through hardclip from softclip

Issue - State: open - Opened by zyxue over 6 years ago
Labels: enhancement, question

#6 - Remove window default value for extract_seq in contig PAS hexamer search

Issue - State: open - Opened by zyxue over 6 years ago
Labels: enhancement

#5 - Add two columns for ctg_hex_dist and ref_hex_dist

Issue - State: closed - Opened by zyxue over 6 years ago

#3 - Parallelize aggregating polyA evidence after groupby (seqname, strand, clv)

Issue - State: closed - Opened by zyxue over 6 years ago - 1 comment
Labels: enhancement

#3 - Parallelize aggregating polyA evidence after groupby (seqname, strand, clv)

Issue - State: closed - Opened by zyxue over 6 years ago - 1 comment
Labels: enhancement

#2 - Inconsistent extracted seq for contig and reference

Issue - State: closed - Opened by zyxue over 6 years ago - 1 comment
Labels: bug

#2 - Inconsistent extracted seq for contig and reference

Issue - State: closed - Opened by zyxue over 6 years ago - 1 comment
Labels: bug

#1 - Infer ref_clv from chimeric contigs

Issue - State: open - Opened by zyxue over 6 years ago
Labels: enhancement

#1 - Infer ref_clv from chimeric contigs

Issue - State: open - Opened by zyxue over 6 years ago
Labels: enhancement