Ecosyste.ms: Issues

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GitHub / zrqiao/NeuralPLexer issues and pull requests

#29 - 如何进行推理工作

Issue - State: open - Opened by ONESSSSSS 9 months ago

#27 - Export residue-level PDB plDDT values

Pull Request - State: closed - Opened by amorehead 9 months ago

#26 - pLDDT values mssing

Issue - State: open - Opened by Luke-ebbis 9 months ago - 1 comment

#25 - RuntimeError: Not compiled with CUDA support

Issue - State: closed - Opened by pstansfeld 9 months ago - 2 comments

#24 - Multiple-GPU support

Issue - State: open - Opened by dingyan20 9 months ago

#23 - Huge protein issue

Issue - State: open - Opened by AlvinLeopold 9 months ago - 1 comment

#22 - Update README.rst

Pull Request - State: closed - Opened by zrqiao 10 months ago

#21 - Fix key prefix for pretrained MHT weights in `mht_encoder.py`

Pull Request - State: closed - Opened by amorehead 10 months ago - 2 comments

#20 - protein sequence input

Issue - State: open - Opened by ehsansyh 10 months ago

#19 - openfold error when making environment

Issue - State: open - Opened by dannyoo 10 months ago

#18 - Error trying to install on Debian 12 with cuda 11.8

Issue - State: closed - Opened by syntesys87 11 months ago - 7 comments

#17 - Question about models/frames and animation.

Issue - State: open - Opened by dealmeida-h 11 months ago

#15 - Provide a runscript+other build

Issue - State: open - Opened by patrickbryant1 11 months ago - 1 comment

#14 - Inference Issue: Missing MHT Weights in NeuralPLexer Checkpoint

Issue - State: open - Opened by JohnBrown2022 11 months ago - 4 comments

#14 - Inference Issue: Missing MHT Weights in NeuralPLexer Checkpoint

Issue - State: open - Opened by JohnBrown2022 11 months ago - 4 comments

#13 - How much time is required for making environment?

Issue - State: open - Opened by jianqingzheng 11 months ago - 8 comments

#11 - Additions and fixes for inference.py

Pull Request - State: closed - Opened by amorehead 11 months ago - 2 comments

#10 - handle args.input_ligand is None in inference.py

Pull Request - State: closed - Opened by jsture 11 months ago

#9 - `batched_structure_sampling` fails if arg.ligand is None

Issue - State: closed - Opened by jsture 11 months ago

#8 - structure not refined, and no pLDDT output.

Issue - State: closed - Opened by Samuel-gwb 11 months ago - 2 comments

#7 - Fix separation of PDB file models in protein.py

Pull Request - State: closed - Opened by amorehead 11 months ago

#6 - `multi_pose_sampling` does not write pLDDT

Issue - State: closed - Opened by jsture 11 months ago - 3 comments

#5 - Dockerfile and associated requirements for NeuralPLexer.

Pull Request - State: closed - Opened by forcefield 11 months ago

#4 - Issue with Cb atoms of threonines, perhaps other amino-acids?

Issue - State: open - Opened by Toverkwark 11 months ago - 6 comments

#3 - Could not load pretrained MHT weights, skipping

Issue - State: closed - Opened by bio-rat 11 months ago - 7 comments

#2 - Sementation fault

Issue - State: closed - Opened by Toverkwark 11 months ago - 1 comment

#1 - Make environment fails

Issue - State: closed - Opened by forcefield 11 months ago - 15 comments