Ecosyste.ms: Issues

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GitHub / zoj613/OccuSpytial issues and pull requests

#45 - MAINT: remove metadata in cython files

Pull Request - State: closed - Opened by zoj613 almost 4 years ago

#44 - BLD: fix readthedocs build failure by re-adding setup.py shim

Pull Request - State: closed - Opened by zoj613 almost 4 years ago - 4 comments

#43 - MAINT: replace polya-gamma random sampler and revamp distributions module

Pull Request - State: closed - Opened by zoj613 about 4 years ago - 1 comment

#42 - MAINT: simplify build process

Pull Request - State: closed - Opened by zoj613 about 4 years ago - 8 comments

#41 - MAINT: Remove docstring duplication in PosteriorParameter class

Pull Request - State: closed - Opened by zoj613 over 4 years ago - 1 comment

#40 - FIX:remove branch protection hook to fix failing CI test

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#39 - MAINT: Rename distribution class

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#38 - DEV: Precommit hooks & style fixes

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#37 - DEV: CI setup

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#36 - DOC: Fix doc build faliture on readthedocs

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#35 - REL: bump version

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#34 - MAINT: Add scipy to build requirements

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#33 - MAINT: add numpy to build requirements

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#32 - REL: prepare for first release

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#31 - DOC: Add sphinx documentation

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#30 - MAINT: use pointers for cdef function

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#29 - ENH: Improve cython & cleanup

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#28 - ENH: Speed improvements

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#27 - ENH: Improve ProbitGibbsSampler speed and bugs

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#26 - ENH: Cythonize data module

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#25 - FIX: Make sure random state initializing distribution is the bitgenrator

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#24 - WIP: Add documentation to project

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#23 - MAINT: Clean up distributions module

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#22 - MAINT: Get rid of out parameter in reduceat func

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#21 - ENH: Use numpy universal functions and remove _cumsum.pyx

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#20 - Make use of numpy's universal functions to simplify codebase

Issue - State: closed - Opened by zoj613 over 4 years ago - 1 comment

#19 - MAINT: use threading backend for single chain sampling

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#18 - ENH: add unittests

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#17 - Gibbs resample method broken

Issue - State: closed - Opened by zoj613 over 4 years ago
Labels: bug

#16 - MAINT: simplify PosteriorParameter and Gibbs base class

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#15 - ENH: add a function to get an instance of a numpy generator

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#14 - MAINT: upgrade scipy requirement to 1.3.3

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#13 - ENH: use a faster bernouilli random sampling algorithm for gibbs samplers

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#12 - MAINT: Use fast SFC64 bitgenator instead of the default one

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#11 - ENH: use c level distributions for random number generation in distributions module

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#10 - ENH: Add a fake data generating function

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#9 - MAINT: clip survival function values to be no less than 1e-04

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#8 - FIX: Implement correct indexing of occupancy state during sampling for unordered surveyed sites

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#7 - MAINT: use brodcasting to calculate logsumexp in gibbs z param update method

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#6 - FIX: Remove high memory load during sampling

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#5 - Caching values returned by getitem in Data class causes a linear growth in memory

Issue - State: closed - Opened by zoj613 over 4 years ago
Labels: bug

#4 - MAINT: clean setup and make cython a build requirement

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#3 - Make cython building optional by including the .c files.

Issue - State: closed - Opened by zoj613 over 4 years ago
Labels: maintainance

#2 - ENH: Rewrite the codebase

Pull Request - State: closed - Opened by zoj613 over 4 years ago

#1 - Docstrings

Pull Request - State: closed - Opened by zoj613 over 5 years ago