zktuong/ktplots issues and pull requests

#129 - prevent crash

Pull Request - State: closed - Opened by zktuong 23 days ago - 1 comment

#128 - plot_cpdb exits with error if no interaction found

Issue - State: closed - Opened by kloot 23 days ago - 3 comments

#127 - edge_colors for plot_cpdb4

Issue - State: open - Opened by kloot 25 days ago - 5 comments

#126 - fixes #125 and #124

Pull Request - State: closed - Opened by zktuong 25 days ago - 1 comment

#125 - Error with `plot_cpdb3` - Sorry not supported. Please use a SingleCellExperiment object.

Issue - State: closed - Opened by lucygarner 25 days ago - 2 comments

#124 - plot_cpdb() error

Issue - State: closed - Opened by lucygarner 25 days ago - 2 comments

#123 - interaction_annotation to replicate plot_cpdb2 plot in vignette

Issue - State: closed - Opened by JackieMium about 1 month ago - 3 comments

#122 - now properly cache biocversion

Pull Request - State: closed - Opened by zktuong about 2 months ago - 1 comment

#121 - Update workflow and formatting

Pull Request - State: closed - Opened by zktuong about 2 months ago - 1 comment

#120 - Some questions regarding visualization details.

Issue - State: open - Opened by wuxiangning 3 months ago - 3 comments

#118 - Error in h(simpleError(msg, call)): While computing the parameter "x" for the function "t", an error occurred: 'data' must be a vector, but it is 'NULL' now In plot4

Issue - State: closed - Opened by wuxiangning 3 months ago - 6 comments
Labels: more-information-needed

#117 - plot3 and plot4 have unattractive proportions. Help!!!!

Issue - State: closed - Opened by wuxiangning 3 months ago - 12 comments

#116 - plot_cpdb question

Issue - State: closed - Opened by L-wang17 4 months ago - 8 comments

#115 - Fix for genes mismatch

Pull Request - State: closed - Opened by zktuong 5 months ago - 1 comment

#114 - Error when including special characters in plot_cpdb3()

Issue - State: closed - Opened by jreimertz 5 months ago - 6 comments

#113 - Result precision

Pull Request - State: closed - Opened by zktuong 7 months ago - 1 comment

#112 - mislead example in _legacy_README.md

Issue - State: closed - Opened by maozhy3 8 months ago - 1 comment

#111 - test

Pull Request - State: closed - Opened by zktuong 8 months ago - 1 comment

#110 - plot_cpdb() error

Issue - State: closed - Opened by rosanababu 9 months ago - 6 comments

#109 - problems with plot_cpdb using cellphonedb v5 outputs

Issue - State: closed - Opened by Zifeng-L 9 months ago - 1 comment

#108 - Update plot_cpdb_heatmap.R

Pull Request - State: closed - Opened by zktuong 10 months ago

#107 - Problem is plotting plot_cpdb4

Issue - State: closed - Opened by stalware 10 months ago - 7 comments

#106 - fixed a bug related to the label when plotting

Pull Request - State: closed - Opened by fentouxungui 11 months ago - 3 comments

#105 - remove prep dimensions

Pull Request - State: closed - Opened by zktuong 12 months ago - 4 comments

#104 - Fix uneven rows and columns

Pull Request - State: closed - Opened by zktuong 12 months ago - 1 comment

#103 - Fix search pattern

Pull Request - State: closed - Opened by zktuong 12 months ago - 1 comment

#102 - fix heatmap if cell type combination not symmetrical

Pull Request - State: closed - Opened by zktuong 12 months ago - 1 comment

#101 - plot_cpdb: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' length

Issue - State: closed - Opened by jreimertz 12 months ago - 8 comments

#100 - revert missing column changes

Pull Request - State: closed - Opened by zktuong 12 months ago - 1 comment

#99 - fix missing rows

Pull Request - State: closed - Opened by zktuong 12 months ago - 1 comment

#98 - add celltypes option to heatmap

Pull Request - State: closed - Opened by zktuong 12 months ago - 1 comment

#97 - fix missing columns

Pull Request - State: closed - Opened by zktuong 12 months ago - 1 comment

#96 - Problems plotting interactions with multiple words in cpdb4

Issue - State: open - Opened by jweefergs about 1 year ago - 3 comments
Labels: bug, wontfix

#95 - incorrect column being used for cellphonedb v5 output

Pull Request - State: closed - Opened by zktuong about 1 year ago - 1 comment

#94 - Update plot_cpdb3.R

Pull Request - State: closed - Opened by WeberKang about 1 year ago - 4 comments

#93 - Warning: ‘>’ not meaningful for factorsError in if (any(lr_interactions[, 3] > 0)) { : missing value where TRUE/FALSE needed

Issue - State: closed - Opened by zehualilab about 1 year ago - 4 comments

#92 - how to order colnames in plot_cpdb() function ?

Issue - State: closed - Opened by Dongjie-orange about 1 year ago - 2 comments

#91 - proble Please check your options for splitby_key and your celltypes.

Issue - State: open - Opened by dd123456000 about 1 year ago - 12 comments
Labels: bug, wontfix

#90 - fix duplicate rownames introduced in CellPhoneDB v5

Pull Request - State: closed - Opened by zktuong about 1 year ago - 1 comment

#89 - Error in `.rowNamesDF<-`(x, value = value) : duplicate 'row.names'

Issue - State: closed - Opened by lijiaze0331 about 1 year ago - 3 comments

#88 - problem in plot_cpdb

Issue - State: closed - Opened by GGboy-Zzz about 1 year ago - 2 comments
Labels: wontfix

#87 - could not find function "scale_linewidth" in scale_linewidth(range = c(0, max_highlight_size))

Issue - State: closed - Opened by honghh2018 about 1 year ago - 3 comments

#86 - Fix bug with degs analysis

Pull Request - State: closed - Opened by zktuong about 1 year ago - 1 comment

#85 - update tutorial

Pull Request - State: closed - Opened by zktuong about 1 year ago - 3 comments

#84 - the parameter keep_significant_only in plot_cpbd.R is not work

Issue - State: closed - Opened by snow55 over 1 year ago - 7 comments

#83 - Error in c_type1[[i]] : subscript out of boundstill getting an error.

Issue - State: closed - Opened by beetlejuice007 over 1 year ago - 4 comments

#82 - error while plotting plot_cpdb_heatmap

Issue - State: closed - Opened by Prathyusha-konda over 1 year ago - 4 comments

#81 - Refactor prep

Pull Request - State: closed - Opened by zktuong over 1 year ago - 1 comment

#80 - refactor plot_cpdb

Issue - State: closed - Opened by zktuong over 1 year ago - 2 comments
Labels: documentation

#79 - attempt to flip the colour order

Pull Request - State: closed - Opened by zktuong over 1 year ago - 1 comment

#78 - plot_cpdb2: non significant interactions show up and other problems

Issue - State: closed - Opened by stanaka6 over 1 year ago - 4 comments

#77 - where to get "interactions_groups.txt" file in plot_cpdb2

Issue - State: closed - Opened by wenqihu1995 over 1 year ago - 4 comments

#76 - Interaction plots not working with deg_analysis = TRUE

Issue - State: closed - Opened by Prathyusha-konda over 1 year ago - 2 comments
Labels: question, wontfix

#75 - Update plot_cpdb.R

Pull Request - State: closed - Opened by polojacky over 1 year ago - 2 comments

#74 - Can't utilize plot_cpdb3,4 functions using my data

Issue - State: closed - Opened by cacaonib over 1 year ago - 4 comments

#73 - split.by parameter in plot_cpdb

Issue - State: closed - Opened by zzzsssyyy1995 almost 2 years ago - 2 comments

#72 - fix the output table format

Pull Request - State: closed - Opened by zktuong almost 2 years ago - 1 comment

#71 - Changing legend scale and order of labels

Issue - State: closed - Opened by stalware almost 2 years ago - 2 comments
Labels: wontfix

#70 - add symmetrical to heatmap

Pull Request - State: closed - Opened by zktuong almost 2 years ago - 1 comment

#69 - plot_cpdb_heatmap doesn't support symmetric

Issue - State: closed - Opened by johan-gson almost 2 years ago - 8 comments
Labels: enhancement

#68 - desiredInteractions shuffling node labels?

Issue - State: closed - Opened by zktuong almost 2 years ago - 5 comments
Labels: wontfix

#67 - counts <- Matrix::t(adata$X) error

Issue - State: closed - Opened by chrsyl almost 2 years ago - 3 comments

#65 - Update plot_cpdb_heatmap.R

Pull Request - State: closed - Opened by fentouxungui almost 2 years ago - 2 comments

#64 - NA/NaN/Inf in foreign function call

Issue - State: closed - Opened by connerlambden almost 2 years ago - 6 comments
Labels: wontfix

#63 - utils::download.file error

Issue - State: closed - Opened by sheenaseven almost 2 years ago - 2 comments
Labels: wontfix

#62 - Adjust spacing of chords in plot_cpdb3

Issue - State: closed - Opened by nhgopee almost 2 years ago - 5 comments
Labels: wontfix

#61 - plot_cpdb2 failed plot a chord diagram of cellphonedb results

Issue - State: closed - Opened by wzh7768 almost 2 years ago - 3 comments
Labels: wontfix

#60 - Bug Report: plot_cpdb3() "grid_color" parameter

Issue - State: closed - Opened by Tu-feng almost 2 years ago - 3 comments
Labels: wontfix

#59 - Fix bug heatmap

Pull Request - State: closed - Opened by Tu-feng almost 2 years ago - 2 comments

#58 - Error in h(simpleError(msg, call))

Issue - State: closed - Opened by AShahzad9 about 2 years ago - 4 comments
Labels: wontfix

#57 - using own data for viz

Issue - State: closed - Opened by Pedramto89 about 2 years ago - 10 comments
Labels: wontfix

#56 - could not find function "combine_cpdb"

Issue - State: closed - Opened by xing9133 about 2 years ago - 2 comments
Labels: wontfix

#55 - legend for plot_cpdb3

Issue - State: closed - Opened by AvitalPo about 2 years ago - 3 comments
Labels: wontfix

#54 - Add combine_cpdb utility function

Pull Request - State: closed - Opened by zktuong about 2 years ago - 1 comment

#53 - add `custom_gene_family` option

Pull Request - State: closed - Opened by zktuong about 2 years ago - 1 comment

#52 - Issue with plot_cpdb2

Issue - State: closed - Opened by DocMonster77 about 2 years ago - 4 comments
Labels: wontfix

#51 - standard_scale not working

Issue - State: closed - Opened by diyang1354 about 2 years ago - 4 comments

#50 - Custom input for plot_cpdb2

Issue - State: closed - Opened by showteeth over 2 years ago - 2 comments

#49 - generate readthedocs

Issue - State: closed - Opened by zktuong over 2 years ago - 1 comment
Labels: wontfix