Ecosyste.ms: Issues

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GitHub / zhpn1024/ribotish issues and pull requests

#37 - Not working with stringtie custom GTF

Issue - State: closed - Opened by ericmalekos 5 months ago - 5 comments

#36 - Why does ribotish call so many ORFs compared to price and ribocode

Issue - State: open - Opened by chenwt 6 months ago - 6 comments

#35 - Encountered error when using ribotish predict

Issue - State: closed - Opened by lbwfff 9 months ago - 2 comments

#34 - Empty sequence error

Issue - State: closed - Opened by NastiaSkuba 10 months ago - 2 comments

#33 - TypeError: unsupported operand type(s) for +=: 'NoneType' and 'int'

Issue - State: open - Opened by haowBio 10 months ago - 7 comments

#32 - ribotish predict module run error

Issue - State: closed - Opened by haowBio over 1 year ago - 2 comments

#31 - Use of 5' mismatch reads in predict

Issue - State: closed - Opened by ericmalekos almost 2 years ago - 1 comment

#30 - AttributeError: 'Exp' object has no attribute 'sq'

Issue - State: open - Opened by noepozzan about 2 years ago - 4 comments

#29 - No reads found!

Issue - State: closed - Opened by noepozzan about 2 years ago - 52 comments

#28 - Wrong CDS annotation

Issue - State: open - Opened by agsanbel about 2 years ago - 6 comments

#27 - The meaning and differences in TisType

Issue - State: open - Opened by ruixuan-zhang about 2 years ago - 10 comments

#25 - run mistakes

Issue - State: open - Opened by czppeter over 2 years ago - 4 comments

#24 - TypeError: unsupported operand type(s) for +=: 'NoneType' and 'int'

Issue - State: closed - Opened by ErinDuffyLacy over 2 years ago - 5 comments

#23 - TypeError: '>=' not supported between instances of 'NoneType' and 'float'

Issue - State: closed - Opened by ericmalekos about 3 years ago - 3 comments

#21 - ribotish quality "no reads found" for TIS reads

Issue - State: closed - Opened by ericmalekos about 3 years ago - 10 comments

#18 - ribotish quality: error: argument -d: expected one argument

Issue - State: open - Opened by yycunc over 3 years ago - 2 comments

#17 - --altcodons ACG,CUG

Issue - State: closed - Opened by etmorefish over 3 years ago

#16 - ribotish tisdiff error?ZeroDivisionError: integer division or modulo by zero

Issue - State: open - Opened by etmorefish over 3 years ago - 10 comments

#15 - what the types of TisType mean?

Issue - State: closed - Opened by shwdmsh over 3 years ago - 2 comments

#14 - how to edit the parameter (-d DIS Position range near start codon or stop codon)?

Issue - State: closed - Opened by shwdmsh over 3 years ago - 3 comments

#13 - What dose this Horizontal line mean

Issue - State: closed - Opened by shwdmsh over 3 years ago - 3 comments

#11 - Feature request: Ribo-seq counts in the results

Issue - State: open - Opened by nsotta about 4 years ago - 2 comments

#10 - Feature Request - Add 3' end match for RPFs

Issue - State: closed - Opened by alanlorenzetti over 4 years ago - 6 comments

#9 - ValueError: start out of range (-21) running ribotish quality

Issue - State: closed - Opened by rbmk1000 over 4 years ago - 4 comments

#8 - "wrong exon strand" and "stop codon error"

Issue - State: closed - Opened by sjannielefevre almost 5 years ago - 17 comments

#7 - Visualization of single transcripts with a-site/p-site coverage

Issue - State: open - Opened by AlexFryd almost 5 years ago - 4 comments

#6 - issues about quality

Issue - State: closed - Opened by Wang497 about 5 years ago - 6 comments

#5 - Python 3 compatibility

Issue - State: closed - Opened by dpryan79 over 5 years ago - 1 comment

#4 - Ribotish on prokaryotic ribosome profiling

Issue - State: closed - Opened by dgelsin over 5 years ago - 13 comments

#3 - Error running ribotish predict with multicore parameters

Issue - State: closed - Opened by elabaronne over 5 years ago - 2 comments

#2 - New release for python 3

Issue - State: closed - Opened by eggzilla over 5 years ago - 3 comments

#1 - Error when running ribotish tisdiff

Issue - State: closed - Opened by marcasriv over 6 years ago - 1 comment