Ecosyste.ms: Issues

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GitHub / zhoujt1994/scHiCluster issues and pull requests

#28 - Normalized impute contact matrix

Issue - State: open - Opened by Xieeeee 3 months ago

#26 - installation with newer python versions

Issue - State: open - Opened by kenrchandradoss 6 months ago

#23 - cooler.Cooler(cell_table.iloc[0])

Issue - State: closed - Opened by XiongGZ 12 months ago

#22 - Implementing normalized gene-score calculation

Issue - State: closed - Opened by Xieeeee about 1 year ago - 3 comments

#21 - create env.yaml & delete .snakemake

Pull Request - State: closed - Opened by DingWB about 1 year ago

#20 - delete .snakemake && add greedy

Pull Request - State: closed - Opened by DingWB about 1 year ago

#19 - Gaussian filter memory error

Issue - State: closed - Opened by sshen82 over 1 year ago - 7 comments

#17 - update snakemake and call domain

Pull Request - State: closed - Opened by DingWB over 1 year ago

#16 - pybedtools sort fails silently if sortBed not available.

Issue - State: open - Opened by Xparx over 1 year ago - 1 comment

#15 - pipeline accepting pairs format?

Issue - State: closed - Opened by Xparx over 1 year ago - 1 comment

#14 - Update 03.apa.ipynb

Pull Request - State: open - Opened by MayWu124 over 1 year ago

#13 - v1 md for all api

Pull Request - State: closed - Opened by rachelzeng98 over 1 year ago

#12 - modify contact_distance

Pull Request - State: closed - Opened by rachelzeng98 over 1 year ago

#11 - add info for prepare-impute and hicluster filter-contact

Pull Request - State: closed - Opened by rachelzeng98 over 1 year ago

#10 - hdf5 to cool format

Issue - State: closed - Opened by Xieeeee over 1 year ago - 1 comment

#8 - Broken link

Issue - State: closed - Opened by wangfuzhou110 over 2 years ago - 1 comment

#7 - merge trans matrix in raw scool

Pull Request - State: closed - Opened by lhqing over 2 years ago

#6 - problems in running generatematrix-cell

Issue - State: open - Opened by qianyizhaoooo almost 3 years ago

#5 - empty npv from embed-concat

Issue - State: closed - Opened by csittz over 3 years ago - 3 comments

#4 - add CLI "hicluster scool"

Pull Request - State: closed - Opened by lhqing almost 4 years ago

#3 - Code reformat

Pull Request - State: closed - Opened by lhqing almost 4 years ago

#2 - requirement for torch

Issue - State: open - Opened by shawnzhangyx about 5 years ago

#1 - problems in running example.py

Issue - State: open - Opened by zhyanlin over 5 years ago - 3 comments