Ecosyste.ms: Issues

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GitHub / zhengxwen/HIBAG issues and pull requests

#33 - Association testing across all HLA type simultaneously

Issue - State: closed - Opened by oalavijeh 7 months ago - 1 comment

#32 - Difference between h.pval and others

Issue - State: closed - Opened by oalavijeh 7 months ago - 1 comment

#31 - hlaConvSequence function: No matching: 02:02

Issue - State: open - Opened by arsangjang 7 months ago

#29 - hg38 hapmap data

Issue - State: open - Opened by s220224 over 1 year ago - 2 comments

#26 - The numbers of SNPs are not consistent

Issue - State: open - Opened by JingjingBai2021 almost 2 years ago - 1 comment

#25 - glm does not work

Issue - State: closed - Opened by JingjingBai2021 almost 2 years ago

#24 - missing SNPs

Issue - State: open - Opened by JingjingBai2021 almost 2 years ago

#22 - More than 50%of SNPs are missing

Issue - State: open - Opened by seagullOnABrick almost 2 years ago - 2 comments

#21 - VCF files

Issue - State: open - Opened by karpat90 almost 2 years ago - 3 comments

#20 - HLA typing for SNP2HLA output

Issue - State: open - Opened by xiw588 almost 2 years ago - 1 comment

#19 - association test

Issue - State: closed - Opened by SunYidan2021 over 2 years ago - 3 comments

#18 - Issue with hlaAttrBagClass

Issue - State: closed - Opened by staedlern over 2 years ago - 10 comments
Labels: bug

#16 - hlaAssocTest()

Issue - State: closed - Opened by mukhtarsadykov about 3 years ago - 1 comment

#15 - Error Installing HIBAG

Issue - State: closed - Opened by pbleic about 3 years ago - 4 comments

#14 - Question: Genotype QC for training

Issue - State: closed - Opened by adiamb over 3 years ago - 1 comment

#13 - Training in parallel causes error for loci "other" than HLA

Issue - State: open - Opened by shubhamsaini over 4 years ago - 2 comments
Labels: bug

#12 - Imputed genotypes to train HIBAG Models?

Issue - State: closed - Opened by adiamb over 4 years ago - 1 comment
Labels: question

#11 - HLA prediction quality

Issue - State: open - Opened by rcanovas over 4 years ago - 1 comment

#10 - "there are 0 individuals in common" and "IDs in PLINK bed are not unique!"

Issue - State: open - Opened by sidtjn about 5 years ago - 1 comment

#9 - Error loading sample pre-built models

Issue - State: closed - Opened by rwanwork over 5 years ago - 2 comments

#8 - Possible Incorrect Accuracy Estimates from HIBAG - Please help !

Issue - State: closed - Opened by Santy-8128 almost 6 years ago - 2 comments

#7 - Force monomorphic SNPs in model?

Issue - State: closed - Opened by cbrunoels almost 6 years ago - 1 comment

#6 - Old aa alignment files

Issue - State: open - Opened by mcjmigdal about 6 years ago

#4 - Amino Acid test with continuous outcome

Issue - State: open - Opened by wusixer over 6 years ago - 2 comments

#3 - Invalid prefix in the PLINK BED file error message

Issue - State: closed - Opened by MarthaDuke over 6 years ago - 3 comments

#2 - Vec gpu

Pull Request - State: closed - Opened by zhengxwen over 7 years ago

#1 - Commit to BioC: v1.3.1

Pull Request - State: closed - Opened by zhengxwen almost 10 years ago