zhafen/linefinder issues and pull requests

#103 - Refactor to be clean and flexible.

Issue - State: closed - Opened by zhafen over 3 years ago - 1 comment

#102 - Tracking test fail irregularly

Issue - State: closed - Opened by zhafen over 5 years ago

#101 - Custom functions on the fly

Issue - State: open - Opened by zhafen over 5 years ago - 1 comment

#100 - The Firefly visualization doesn't allow for custom visualization by the user

Issue - State: open - Opened by zhafen over 5 years ago

#99 - Improve install experience

Issue - State: closed - Opened by zhafen over 5 years ago - 1 comment
Labels: enhancement

#98 - Linefinder Produces Excessive Warnings

Issue - State: open - Opened by zhafen over 5 years ago

#97 - Make the analysis suite user friendly

Issue - State: open - Opened by zhafen almost 6 years ago - 1 comment

#96 - Smooth Rstar0.5, and base classification on that

Issue - State: closed - Opened by zhafen over 6 years ago - 1 comment
Labels: enhancement, critical

#95 - ID Selection fails for galaxies

Issue - State: open - Opened by zhafen over 6 years ago - 6 comments
Labels: bug, blocker

#94 - Internally Processed material is inaccurate to a minor degree

Issue - State: closed - Opened by zhafen over 6 years ago - 1 comment
Labels: bug, major

#93 - Add units

Issue - State: open - Opened by zhafen over 6 years ago
Labels: enhancement, minor

#92 - The classification `is_in_CGM` is currently too restrictive.

Issue - State: closed - Opened by zhafen over 6 years ago - 2 comments
Labels: bug, blocker

#91 - Allow particles that have been enriched in a galaxy to count as processed

Issue - State: closed - Opened by zhafen over 6 years ago - 1 comment
Labels: enhancement, wontfix, major

#90 - Color scheme needs to be revised

Issue - State: closed - Opened by zhafen over 6 years ago
Labels: blocker, task

#89 - Create automatic argument fetcher

Issue - State: closed - Opened by zhafen over 6 years ago - 2 comments
Labels: enhancement, critical

#88 - AHF finds a virial radius for satellites. How?

Issue - State: closed - Opened by zhafen over 6 years ago - 1 comment
Labels: task, critical

#87 - Potential is stored in the particle data, but not the tracking data

Issue - State: closed - Opened by zhafen over 6 years ago - 1 comment
Labels: enhancement, critical

#86 - Inconsistent use of pandas DataFrames when using halo data

Issue - State: open - Opened by zhafen over 6 years ago
Labels: minor, task

#85 - Pathfinder run with jug stalls at certain locations when running through a job

Issue - State: closed - Opened by zhafen over 6 years ago - 3 comments
Labels: bug, critical

#84 - Trying to call certain data keys in worldlines fails

Issue - State: closed - Opened by zhafen over 6 years ago - 3 comments
Labels: bug, blocker

#83 - Make classification that divides particles according to vr

Issue - State: closed - Opened by zhafen over 6 years ago
Labels: major, task

#82 - There's an unexpectedly high amount of IP material in the CGM as high as z=5

Issue - State: closed - Opened by zhafen over 6 years ago - 1 comment
Labels: major, task

#81 - The radial velocity in the CGM is spuriously always positive

Issue - State: closed - Opened by zhafen over 6 years ago - 2 comments
Labels: bug, major

#80 - The cold and dense EP material found around satellite galaxies may be an issue

Issue - State: closed - Opened by zhafen over 6 years ago - 1 comment
Labels: major, task

#79 - Create multi-panel summary plot

Issue - State: closed - Opened by zhafen over 6 years ago - 2 comments
Labels: task, critical

#78 - Create streamline plots like Daniel had

Issue - State: closed - Opened by zhafen over 6 years ago - 6 comments
Labels: enhancement, critical

#77 - py.test eventually breaks on Quest when using the default Python distribution

Issue - State: closed - Opened by zhafen over 6 years ago - 1 comment
Labels: bug, major

#76 - Include ISM gas mass in CGM classification

Issue - State: closed - Opened by zhafen over 6 years ago - 1 comment
Labels: enhancement, minor

#75 - We may not be sampling galaxy properties properly

Issue - State: closed - Opened by zhafen over 6 years ago - 1 comment
Labels: bug, minor

#74 - Set-up a basic analysis pipeline that can be rerun easily

Issue - State: closed - Opened by zhafen over 6 years ago - 2 comments
Labels: enhancement, critical

#73 - Setup process for iterating over multiple pathfinder data sets

Issue - State: closed - Opened by zhafen over 6 years ago - 1 comment
Labels: task, critical

#72 - We still need to decide on a good definition for a galaxy

Issue - State: closed - Opened by zhafen over 6 years ago - 2 comments
Labels: task, critical

#71 - Check that getting data out to 2Rvir is okay

Issue - State: closed - Opened by zhafen over 6 years ago
Labels: major, task

#70 - Apparent memory leak in ParticleTrackGalaxyFinder.get_galaxy_identification_loop_parallel()

Issue - State: closed - Opened by zhafen over 6 years ago - 2 comments
Labels: bug, critical

#69 - When using the new galaxy definition, not enough wind is produced

Issue - State: closed - Opened by zhafen almost 7 years ago - 3 comments
Labels: bug, critical

#68 - CGM EP and NEP classifications should be done specific to the relevant redshift

Issue - State: closed - Opened by zhafen almost 7 years ago - 2 comments
Labels: bug, blocker

#67 - Prevent ejected stars from being counted as wind

Issue - State: open - Opened by zhafen almost 7 years ago
Labels: bug, critical

#66 - Fraction of accreted stars does not add to 1

Issue - State: closed - Opened by zhafen almost 7 years ago - 2 comments
Labels: bug, critical

#65 - Not all duplicate particles appear to be consistently removed

Issue - State: closed - Opened by zhafen almost 7 years ago - 1 comment
Labels: bug, blocker

#64 - Sampling IDs fails when selecting only either gas or stars

Issue - State: open - Opened by zhafen almost 7 years ago
Labels: bug, major

#63 - A lot of stars form well outside the effective radius

Issue - State: closed - Opened by zhafen almost 7 years ago - 7 comments
Labels: bug, blocker

#62 - Putting data in fractional units is currently broken in many cases

Issue - State: closed - Opened by zhafen almost 7 years ago - 5 comments
Labels: bug, critical

#61 - There may exist wind that is not classified as such

Issue - State: closed - Opened by zhafen almost 7 years ago - 2 comments
Labels: bug, major

#60 - Understand if the differences between FIRE-1 and FIRE-2 in EP gas come from lower snapshot time resolution

Issue - State: closed - Opened by zhafen almost 7 years ago - 1 comment
Labels: task, critical

#59 - Make a classification category for particles that have never accreted

Issue - State: closed - Opened by zhafen almost 7 years ago - 1 comment
Labels: bug, blocker

#58 - Allow ID sets to be combined before sampling

Issue - State: open - Opened by zhafen almost 7 years ago - 1 comment
Labels: enhancement, minor

#57 - Finding the index for the first valid snapshot fails in some cases when snap_step != 1

Issue - State: closed - Opened by zhafen almost 7 years ago - 1 comment
Labels: bug, critical

#56 - Change how global default parameters are stored

Issue - State: open - Opened by zhafen almost 7 years ago
Labels: enhancement, trivial

#55 - A significant fraction of stars are classified as intergalactic transfer

Issue - State: closed - Opened by zhafen almost 7 years ago - 6 comments
Labels: bug, blocker

#54 - Load less data when automatically accessing data

Issue - State: open - Opened by zhafen almost 7 years ago
Labels: enhancement, minor

#53 - A large fraction of accreted mass comes from stellar mergers

Issue - State: closed - Opened by zhafen almost 7 years ago - 1 comment
Labels: bug, critical

#52 - Redefine NEP gas as everything that's not EP

Issue - State: closed - Opened by zhafen almost 7 years ago - 1 comment
Labels: enhancement, minor

#51 - Rename t_EP to t_res for consistency with published results.

Issue - State: open - Opened by zhafen almost 7 years ago - 1 comment
Labels: minor, task

#50 - In WorldlineDataMasker, masking before or after first accretion has some uncertainty to it

Issue - State: closed - Opened by zhafen almost 7 years ago - 1 comment
Labels: bug, major

#49 - Setting t_min = 0 is much more selective than t_min = very small

Issue - State: closed - Opened by zhafen almost 7 years ago - 3 comments
Labels: bug, critical

#48 - Make all data retrieval methods accessible by default plotting methods

Issue - State: closed - Opened by zhafen almost 7 years ago - 1 comment
Labels: enhancement, critical

#47 - Finding the circular velocity at a given radius is prohibitively memory intensive

Issue - State: closed - Opened by zhafen almost 7 years ago - 1 comment
Labels: bug, blocker

#46 - Handle "Boundary Conditions" generally

Issue - State: closed - Opened by zhafen almost 7 years ago - 6 comments
Labels: enhancement, major

#45 - Allow choice of a velocity scale when classifying

Issue - State: closed - Opened by zhafen almost 7 years ago - 1 comment
Labels: enhancement, blocker

#44 - Large merger fraction at high redshift

Issue - State: closed - Opened by zhafen almost 7 years ago - 3 comments
Labels: bug, critical

#43 - Check that AHF velocities are in correct units

Issue - State: closed - Opened by zhafen almost 7 years ago - 4 comments
Labels: bug, critical

#42 - Allow processes to be spread across multiple nodes

Issue - State: closed - Opened by zhafen almost 7 years ago - 6 comments
Labels: enhancement, critical

#41 - Integrate stellar effective radius as a length scale in the classification pipeline

Issue - State: closed - Opened by zhafen almost 7 years ago - 1 comment
Labels: blocker, task

#40 - The effective radius of some galaxies may be incorrect

Issue - State: closed - Opened by zhafen almost 7 years ago - 1 comment
Labels: bug, major

#39 - Allow choosing of halo file tag

Issue - State: closed - Opened by zhafen about 7 years ago - 2 comments
Labels: enhancement, critical

#38 - When analyzing data, can accidentally mismatch data products.

Issue - State: open - Opened by zhafen about 7 years ago - 1 comment
Labels: enhancement, major

#37 - Distance to other galaxy selection is messed up for old pipeline data.

Issue - State: closed - Opened by zhafen about 7 years ago - 4 comments
Labels: bug, critical

#36 - galaxy_find fails to store data

Issue - State: closed - Opened by zhafen about 7 years ago - 1 comment
Labels: bug, critical

#35 - Failure to find distance to satellite galaxies, probably in the early universe

Issue - State: closed - Opened by zhafen about 7 years ago - 4 comments
Labels: bug, critical

#34 - A version of d_sat, scaled by the length scale of the nearest satellite, would be useful

Issue - State: closed - Opened by zhafen about 7 years ago - 1 comment
Labels: bug, major

#33 - d_sat in galaxy_find.py doesn't work for early snapshots

Issue - State: closed - Opened by zhafen about 7 years ago - 1 comment
Labels: bug, critical

#32 - Save `is_in_other_gal` as part of events

Issue - State: closed - Opened by zhafen about 7 years ago - 1 comment
Labels: enhancement, major

#31 - Save index of first accretion during classification

Issue - State: closed - Opened by zhafen about 7 years ago - 1 comment
Labels: enhancement, minor

#30 - Save distance from nearest satellite galaxy during galaxy finding

Issue - State: closed - Opened by zhafen about 7 years ago - 1 comment
Labels: enhancement, critical

#29 - Make sure select stores the filters applied to the data

Issue - State: closed - Opened by zhafen about 7 years ago - 1 comment
Labels: enhancement, critical

#28 - Particle(s) with NaN values past certain redshift

Issue - State: closed - Opened by zhafen about 7 years ago - 4 comments
Labels: bug, major

#27 - Change particle tracking to automatically choose start point, end point, etc

Issue - State: closed - Opened by zhafen about 7 years ago - 1 comment
Labels: enhancement, critical

#26 - Conversion factor uses wrong n_particles

Issue - State: closed - Opened by zhafen about 7 years ago - 1 comment
Labels: bug, major

#25 - track.py finds more than the sample number of particles

Issue - State: closed - Opened by zhafen about 7 years ago - 2 comments
Labels: bug, blocker

#24 - Stored paths are relative, not absolute

Issue - State: closed - Opened by zhafen about 7 years ago - 1 comment
Labels: bug, trivial

#23 - Saving redshift_first_acc with real data results in all values of -1

Issue - State: closed - Opened by zhafen about 7 years ago - 7 comments
Labels: bug, blocker

#22 - Make general matplotlibrc file that's packaged with the worldline

Issue - State: open - Opened by zhafen about 7 years ago
Labels: enhancement, trivial

#21 - Worldlines.make_multiple_plots hangs at the end of running all the plots

Issue - State: closed - Opened by zhafen about 7 years ago - 3 comments
Labels: bug, major

#20 - Create a Config file, and a good directory setup for storing data

Issue - State: closed - Opened by zhafen about 7 years ago - 2 comments
Labels: task, critical

#19 - Make compatible with Python 3

Issue - State: closed - Opened by zhafen about 7 years ago - 2 comments
Labels: minor, proposal

#18 - Build analysis framework for classified data

Issue - State: closed - Opened by zhafen about 7 years ago - 3 comments
Labels: task, critical

#17 - Parallel galaxy finding results don't match serial galaxy finding results

Issue - State: closed - Opened by zhafen about 7 years ago - 1 comment
Labels: bug, major

#16 - Memory leak in ParticleTracker.save_particle_tracks()

Issue - State: closed - Opened by zhafen about 7 years ago - 1 comment
Labels: bug, minor

#15 - Use consistent naming scheme across code modules

Issue - State: open - Opened by zhafen about 7 years ago - 2 comments
Labels: minor, task

#14 - EOFError when running parallel particle tracking

Issue - State: closed - Opened by zhafen about 7 years ago - 2 comments
Labels: bug, blocker

#13 - ParticleTracker.get_tracked_data() needs to be sped up

Issue - State: closed - Opened by zhafen about 7 years ago - 1 comment
Labels: enhancement, blocker

#12 - IDSelector.get_selected_ids_parallel() hangs and never finishes

Issue - State: closed - Opened by zhafen about 7 years ago - 3 comments
Labels: bug, critical

#11 - Test data changes with every commit

Issue - State: open - Opened by zhafen about 7 years ago
Labels: bug, minor

#10 - Update pipeline to use cgs units for particle tracking

Issue - State: closed - Opened by zhafen about 7 years ago - 2 comments
Labels: task, critical

#9 - Prepare package for release

Issue - State: open - Opened by zhafen about 7 years ago - 1 comment
Labels: minor, task

#8 - Handle potential duplicate IDs in FIRE-2

Issue - State: closed - Opened by zhafen about 7 years ago - 2 comments
Labels: bug, critical

#7 - Handle when split particles stop existing

Issue - State: open - Opened by zhafen about 7 years ago - 4 comments
Labels: minor, task

#6 - Make compatible with Stampede2

Issue - State: closed - Opened by zhafen about 7 years ago - 2 comments
Labels: bug, minor

#5 - Heavy memory usage in `IDSelector.select_ids()`

Issue - State: closed - Opened by zhafen about 7 years ago - 7 comments
Labels: bug, blocker

#1 - Unexpected Memory Usage

Issue - State: closed - Opened by zhafen about 7 years ago - 4 comments
Labels: bug, major

GitHub / zhafen/linefinder issues and pull requests