Ecosyste.ms: Issues

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GitHub / zarr-developers/zarr-python issues and pull requests

#1269 - Treatment of filters / compressors is not consistent with V3 "codecs"

Issue - State: closed - Opened by rabernat over 1 year ago - 1 comment
Labels: V3

#1267 - Issue fixed

Pull Request - State: closed - Opened by h20200051 over 1 year ago - 11 comments
Labels: needs release notes

#1253 - Add missing newline at EOF

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago

#1244 - Add sphinx-autobuild to documentation build options

Issue - State: open - Opened by DON-BRAN over 1 year ago - 3 comments
Labels: good-first-issue

#1240 - Update tutorial.rst

Pull Request - State: closed - Opened by Mubarraqqq over 1 year ago - 4 comments
Labels: documentation, stale

#1238 - Adding Zarr visualization to docs

Issue - State: open - Opened by Mubarraqqq over 1 year ago - 6 comments
Labels: documentation, good-first-issue

#1237 - Make sure fs exceptions are raised if not Missing

Pull Request - State: closed - Opened by martindurant over 1 year ago - 9 comments
Labels: needs release notes, stale

#1229 - Integrating Ipython shell into the tutorial notebook

Pull Request - State: closed - Opened by GbotemiB over 1 year ago - 4 comments
Labels: documentation, stale

#1228 - Double counting groups in V3

Issue - State: closed - Opened by rabernat over 1 year ago
Labels: bug, V3

#1223 - Update: added date types supported on tutorial docs

Pull Request - State: closed - Opened by oguejioforO over 1 year ago - 6 comments
Labels: documentation, stale

#1218 - ZipStore: zipfile.BadZipFile with multiprocess pytorch dataloader

Issue - State: closed - Opened by croth1 over 1 year ago - 6 comments
Labels: bug

#1217 - Updated tutorial docs

Pull Request - State: closed - Opened by DON-BRAN over 1 year ago - 2 comments
Labels: documentation, needs release notes, stale

#1214 - [WIP] Attempt to continue LRU cache for decoded chunks

Pull Request - State: open - Opened by croth1 over 1 year ago - 9 comments

#1204 - adding GitHub Action for Creating a Release on Tag push

Pull Request - State: closed - Opened by julianavmgiusti over 1 year ago - 7 comments
Labels: stale

#1196 - Move codespell options around

Pull Request - State: closed - Opened by DimitriPapadopoulos over 1 year ago - 15 comments
Labels: stale

#1190 - Fixed an error in an output in the tutorial notebook

Pull Request - State: closed - Opened by KarlieKKY over 1 year ago - 3 comments
Labels: documentation, stale

#1189 - Made the codes in 'creating a development environment' and 'creating a branch' copy pastable.

Pull Request - State: closed - Opened by Azaya89 over 1 year ago - 5 comments
Labels: documentation, needs release notes, stale

#1186 - Versioning Releases wiith Rever

Pull Request - State: closed - Opened by GbotemiB over 1 year ago - 9 comments
Labels: maintenance, stale

#1185 - Managing Authors/Contributors with Rever

Pull Request - State: closed - Opened by GbotemiB over 1 year ago - 3 comments
Labels: documentation, stale

#1184 - zipstore delitems via override

Pull Request - State: open - Opened by I-am-Emmanuel over 1 year ago - 13 comments

#1166 - added example of creating zarr arrays in README

Pull Request - State: closed - Opened by baimamboukar over 1 year ago - 4 comments

#1163 - Integrating tutorial.ipynb into readthedocs

Pull Request - State: open - Opened by GbotemiB over 1 year ago - 15 comments

#1161 - V3 Consolidated Metadata

Issue - State: open - Opened by joshmoore over 1 year ago - 1 comment
Labels: help wanted, maintenance, V3

#1152 - Error converting hdf5 file to zarr

Issue - State: open - Opened by joshua-gould almost 2 years ago - 2 comments
Labels: bug

#1134 - Update GitHub Actions

Pull Request - State: closed - Opened by DimitriPapadopoulos almost 2 years ago - 8 comments

#1131 - Getitems: support `meta_array`

Pull Request - State: closed - Opened by madsbk almost 2 years ago - 31 comments
Labels: needs release notes

#1118 - Adding GitHub release publishing step (when tagging)

Issue - State: open - Opened by jakirkham almost 2 years ago - 18 comments
Labels: maintenance

#1106 - v3 stores: Implement efficient get/set_partial_values

Issue - State: open - Opened by jstriebel almost 2 years ago - 2 comments
Labels: V3

#1104 - async zarr

Issue - State: closed - Opened by martindurant almost 2 years ago - 9 comments

#1096 - add storage_transformers and get/set_partial_values

Pull Request - State: closed - Opened by jstriebel almost 2 years ago - 35 comments

#1089 - use __reduce__ for pickling instead of __setstate__ / __getstate__

Pull Request - State: open - Opened by d-v-b almost 2 years ago - 2 comments

#1051 - forward write_empty_chunks kwarg in group.require_dataset

Pull Request - State: open - Opened by d-v-b about 2 years ago - 9 comments

#1040 - [WIP] getitems / setitems for BaseStore

Pull Request - State: closed - Opened by d-v-b about 2 years ago - 8 comments

#1029 - indexing with list not supported

Issue - State: closed - Opened by brentp about 2 years ago - 14 comments

#1019 - [v3] consider using position only and keyword only arguments

Issue - State: closed - Opened by joshmoore about 2 years ago - 3 comments
Labels: help wanted, V3, design discussion

#991 - Proposal: Add Array.blocks using new BlockIndexer (Prototype Code Included)

Issue - State: closed - Opened by tasansal over 2 years ago - 7 comments

#963 - Fix a TOCTOU race in `open_array(mode="a")`

Pull Request - State: open - Opened by alanhdu over 2 years ago - 4 comments

#962 - Passing dask array to zarr leads to a TypeError

Issue - State: open - Opened by michael-sutherland over 2 years ago - 24 comments

#961 - Unspecified test error in 2.10.3 `Fatal Python error: Aborted`

Issue - State: closed - Opened by TheChymera over 2 years ago - 5 comments
Labels: help wanted, platform-specific

#934 - [REVIEW] Support of alternative array classes

Pull Request - State: closed - Opened by madsbk over 2 years ago - 29 comments

#912 - zarr validation and consistency checking

Issue - State: closed - Opened by satra over 2 years ago - 13 comments
Labels: enhancement, help wanted

#903 - Consistent signatures for `listdir()` and `rmdir()`

Pull Request - State: open - Opened by DimitriPapadopoulos over 2 years ago - 2 comments

#877 - Add Sharding Support

Issue - State: closed - Opened by jstriebel over 2 years ago - 29 comments

#869 - Enable testing on a big-endian image

Pull Request - State: open - Opened by joshmoore over 2 years ago - 10 comments
Labels: help wanted, platform-specific

#863 - [WIP] Boundary chunk optimization and typing

Pull Request - State: open - Opened by d-v-b over 2 years ago - 3 comments

#757 - behavior of `is_total_slice` for boundary chunks

Issue - State: open - Opened by d-v-b about 3 years ago - 7 comments

#720 - .zmetadata clarification

Issue - State: closed - Opened by DennisHeimbigner about 3 years ago - 4 comments

#704 - Compact JSON in .zarray

Issue - State: closed - Opened by andreasg123 over 3 years ago - 9 comments

#688 - added store.fs.rmdir in storage.py to eliminate slow rmdir operation

Pull Request - State: open - Opened by hayesgb over 3 years ago - 4 comments
Labels: help wanted

#667 - Partial read

Pull Request - State: closed - Opened by andrewfulton9 over 3 years ago - 33 comments

#638 - Clarify Store Interface

Issue - State: closed - Opened by Carreau over 3 years ago - 2 comments

#631 - zarr pointer to existing files

Issue - State: closed - Opened by dschneiderch over 3 years ago - 18 comments

#621 - Start stop for iterator

Pull Request - State: closed - Opened by yetyetanotherusername almost 4 years ago - 14 comments

#593 - Pass mode paramter to open_group enabling creation of new ZipStores

Pull Request - State: open - Opened by hmaarrfk almost 4 years ago - 4 comments

#575 - Multi-threading meta-data lookups

Issue - State: closed - Opened by nbren12 almost 4 years ago - 12 comments

#556 - File Chunk Store

Issue - State: closed - Opened by ajelenak about 4 years ago - 32 comments

#552 - FutureWarning from zarr.open

Issue - State: closed - Opened by abergou about 4 years ago - 9 comments
Labels: help wanted

#549 - Settable Array.store and lazy metadata loading

Pull Request - State: open - Opened by gsakkis over 4 years ago - 2 comments

#535 - Using the Zarr library to read HDF5

Issue - State: closed - Opened by rsignell-usgs over 4 years ago - 21 comments

#534 - WIP: Concurrent block reads and writes

Pull Request - State: closed - Opened by llllllllll over 4 years ago - 2 comments

#533 - WIP: Add custom json encoder and decoder

Pull Request - State: closed - Opened by constantinpape over 4 years ago - 7 comments
Labels: stale

#518 - Enhancement: Chunk level access api / indexing by chunk rather than voxel

Issue - State: closed - Opened by David-Baddeley over 4 years ago - 27 comments

#515 - Question/possible enhancement: Relationship to N5 + Arrow/Parquet?

Issue - State: closed - Opened by wsphillips over 4 years ago - 11 comments

#489 - Allow disabling filling of missing chunks

Pull Request - State: open - Opened by willirath over 4 years ago - 17 comments
Labels: good-first-issue

#486 - How to prevent Zarr from returning NaN for missing chunks?

Issue - State: open - Opened by willirath over 4 years ago - 34 comments

#466 - can zarr support irregularity chunk size ?

Issue - State: closed - Opened by cheery550 almost 5 years ago - 1 comment

#464 - Add require_parent and check_exists as options

Pull Request - State: open - Opened by Cedric-LG almost 5 years ago - 5 comments
Labels: good-first-issue

#457 - Raise informative error when chunk size 0

Pull Request - State: closed - Opened by jrbourbeau almost 5 years ago - 9 comments
Labels: stale

#447 - optmizaton for LRUStoreCache.__contains__

Pull Request - State: closed - Opened by shikharsg almost 5 years ago - 8 comments
Labels: stale

#392 - checksums for chunks

Issue - State: open - Opened by ttung over 5 years ago - 21 comments

#389 - Supporting links and references

Issue - State: open - Opened by jakirkham over 5 years ago - 8 comments

#349 - Requirements of store data

Issue - State: closed - Opened by jakirkham over 5 years ago - 11 comments

#306 - LRU cache for decoded chunks

Pull Request - State: closed - Opened by shikharsg over 5 years ago - 35 comments
Labels: stale

#280 - Best practices for metadata conventions

Issue - State: closed - Opened by alimanfoo almost 6 years ago - 13 comments

#278 - LRU cache for decoded chunks

Issue - State: open - Opened by alimanfoo almost 6 years ago - 20 comments

#276 - DOC: zarr spec v3: adds optional dimensions and the "netZDF" format

Pull Request - State: closed - Opened by shoyer almost 6 years ago - 60 comments

#264 - Future of open...() functions

Issue - State: open - Opened by alimanfoo about 6 years ago - 1 comment

#253 - Zarr DirectoryStore: getsize is wrong

Issue - State: open - Opened by Kriechi about 6 years ago - 12 comments
Labels: bug, help wanted

#167 - Dimension scales

Issue - State: closed - Opened by alimanfoo over 6 years ago - 8 comments
Labels: enhancement

#161 - 0-dimensional arrays

Pull Request - State: closed - Opened by alimanfoo over 6 years ago - 7 comments
Labels: enhancement, release notes done